mRNA_C-australica_Contig_10264.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10264.1.1 vs. uniprot
Match: A0A2D4SGE2_9GAMM (Transporter n=1 Tax=Salinisphaeraceae bacterium TaxID=2026789 RepID=A0A2D4SGE2_9GAMM) HSP 1 Score: 387 bits (994), Expect = 1.030e-130 Identity = 198/276 (71.74%), Postives = 225/276 (81.52%), Query Frame = 1 Query: 1 SYFGTTAFAARVLGLTAATMMVGGGALWLNWRLRAARRAGEGYGTGHTREPEALDGDVPGFWTALLPIVAVIGINLVMVRYVMPGWDTGYLGTDAYGNTDFESVRGLWGIIPALLIAGLLVAAVHFRSRAGLNRTLTDGAMGSLLPMFNTASEVGYGTTIATLAAFAVVKESVLNISPGNPLISEMVAVNVLAGITGSASGGLGIALSALGETYNELAASLGVNPEFMHRIASMSSGGFDSLPHNGAVITLLTICGLTHRQAYPDIAVVSLLIPFL 828 SYFGTTAFAA +LGL MV GG WLN+RLR AR AGEGYG GHT+EP +L G+ P ALLPI VIG+N MV Y +PGWDT YL + YG T E++RG WG+I ALL A + VAA+HFRS LN+TL GAMG+LLP FNTASEVGYG TIA+LAAFAVV+++VLN+SPGNPLISEM AVNVLAGITGSASGGLGIAL ALGETY ++A + G++PE MHRIASMSSGGFDSLPHNGA+ITLLTICGLTHRQAY DIAVVS+LIPFL Sbjct: 172 SYFGTTAFAAPILGLVGGAAMVTGGVTWLNFRLRKARAAGEGYGEGHTQEPGSLAGETPHVLLALLPIALVIGVNYAMVEYWIPGWDTDYLAGEQYGETSIEALRGFWGMITALLAANIAVAAIHFRSIETLNKTLGAGAMGALLPTFNTASEVGYGATIASLAAFAVVRDAVLNLSPGNPLISEMAAVNVLAGITGSASGGLGIALGALGETYLQMAQAAGIDPEIMHRIASMSSGGFDSLPHNGAIITLLTICGLTHRQAYGDIAVVSVLIPFL 447
BLAST of mRNA_C-australica_Contig_10264.1.1 vs. uniprot
Match: A0A2E3NV07_9GAMM (Transporter n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A2E3NV07_9GAMM) HSP 1 Score: 365 bits (938), Expect = 3.020e-122 Identity = 182/274 (66.42%), Postives = 216/274 (78.83%), Query Frame = 1 Query: 4 YFGTTAFAARVLGLTAATMMVGGGALWLNWRLRAARRAGEGYGTGHTREPEALDGDVPGFWTALLPIVAVIGINLVMVRYVMPGWDTGYLGTDAYGNTDFESVRGLWGIIPALLIAGLLVAAVHFRSRAGLNRTLTDGAMGSLLPMFNTASEVGYGTTIATLAAFAVVKESVLNISPGNPLISEMVAVNVLAGITGSASGGLGIALSALGETYNELAASLGVNPEFMHRIASMSSGGFDSLPHNGAVITLLTICGLTHRQAYPDIAVVSLLIPF 825 YF TTAFAA VLG+ M GGG WLN R+RAAR GEGYG GH EP DG P FW ALLPIV VIG+N +V +V+P WDT +L D +GNT +RGLW +I ALL+A L V +H+RS LNR++T A GSLLP FNTASEVGYGTTIA+L+AF +VK +V+N+SPGNPLISEMVA+NVLAGITGSASGGL IAL+ALG+TYN+LA LGV+ E MHR+ASM+ GGFD+LPHNGAVITLLTICGL+H+QAY DIA+VS++IPF Sbjct: 172 YFETTAFAAPVLGIVGGLGMFGGGVWWLNRRMRAARAVGEGYGAGHHNEPTEFDGATPSFWVALLPIVLVIGVNYALVEWVIPSWDTAFLAEDRFGNTGIGRLRGLWAMIVALLVANLTVILIHYRSWDQLNRSMTAAANGSLLPTFNTASEVGYGTTIASLSAFVLVKNAVINVSPGNPLISEMVAINVLAGITGSASGGLSIALAALGDTYNQLAVDLGVSKELMHRVASMACGGFDTLPHNGAVITLLTICGLSHKQAYKDIAMVSMVIPF 445
BLAST of mRNA_C-australica_Contig_10264.1.1 vs. uniprot
Match: A0A363UJT7_9GAMM (Transporter n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A363UJT7_9GAMM) HSP 1 Score: 357 bits (916), Expect = 6.440e-119 Identity = 182/274 (66.42%), Postives = 215/274 (78.47%), Query Frame = 1 Query: 4 YFGTTAFAARVLGLTAATMMVGGGALWLNWRLRAARRAGEGYGTGHTREPEALDGDVPGFWTALLPIVAVIGINLVMVRYVMPGWDTGYLGTDAYGNTDFESVRGLWGIIPALLIAGLLVAAVHFRSRAGLNRTLTDGAMGSLLPMFNTASEVGYGTTIATLAAFAVVKESVLNISPGNPLISEMVAVNVLAGITGSASGGLGIALSALGETYNELAASLGVNPEFMHRIASMSSGGFDSLPHNGAVITLLTICGLTHRQAYPDIAVVSLLIPF 825 YF TTAFAA VLGL M+GGG WLN R R AR AGEGYG GH+ EP DG PGF A+LPIV VIG+N +V +++P WDT YL T+ +GNTD +RGLW +I ALL+A L V +H+RS LN +L A GSLLP FNTASEVGYGTTIA+L+AF +VK +V+N++PGNPLISEMVA+NVLAGITGSASGGL IAL+ALG+TYN+LAA L + E MHRIASM+ GGFD+LPHNGAVITLLTICGLTHRQAY DIA+V++ IPF Sbjct: 172 YFETTAFAAPVLGLLGGLGMMGGGVWWLNRRYRQARAAGEGYGRGHSNEPAQFDGPTPGFAVAVLPIVLVIGVNFALVEWLIPNWDTAYLATEEFGNTDIGKLRGLWAMIVALLVANLSVILIHYRSWDQLNGSLKLAANGSLLPTFNTASEVGYGTTIASLSAFVLVKNAVVNVAPGNPLISEMVAINVLAGITGSASGGLSIALAALGDTYNQLAADLNIPRELMHRIASMACGGFDTLPHNGAVITLLTICGLTHRQAYKDIAMVTIGIPF 445
BLAST of mRNA_C-australica_Contig_10264.1.1 vs. uniprot
Match: UPI0012AEC726 (GntP family permease n=1 Tax=Marinicella rhabdoformis TaxID=2580566 RepID=UPI0012AEC726) HSP 1 Score: 324 bits (831), Expect = 4.400e-106 Identity = 166/275 (60.36%), Postives = 210/275 (76.36%), Query Frame = 1 Query: 1 SYFGTTAFAARVLGLTAATMMVGGGALWLNWRLRAARRAGEGYGTGHTREPEALDGD-VPGFWTALLPIVAVIGINLVMVRYVMPGWDTGYLGTDAYGNTDFESVRGLWGIIPALLIAGLLVAAVHFRSRAGLNRTLTDGAMGSLLPMFNTASEVGYGTTIATLAAFAVVKESVLNISPGNPLISEMVAVNVLAGITGSASGGLGIALSALGETYNELAASLGVNPEFMHRIASMSSGGFDSLPHNGAVITLLTICGLTHRQAYPDIAVVSLLIP 822 SYFGT +AA ++G+ A M+ GG LW+N R++ + EGYG HT EPE LD +P ALLPIV V+ +N ++ ++++P WDTGYL YG + +W +I ALL A L+V AVH+R +N+T+T GA+GS+LP FNT SEVGYG TIA+LAAF +VK++V+NISPGNPLISE+VAVNVLAGITGSASGGL IAL ALGETY +LA +NPE+MHR+ASM+SGGFDSLPHNGAVITLLTICGL+H+Q+Y DIA+VSL+IP Sbjct: 171 SYFGTNMYAAPLIGICAGLAMMVGGLLWINKRIKTHQA--EGYGENHTHEPEHLDSQHLPNLMLALLPIVVVVLLNFLLQKHIIPSWDTGYLAEAKYGAISVNKLVAVWSMIIALLAANLVVIAVHWRRFVSINQTMTKGALGSMLPTFNTGSEVGYGATIASLAAFVLVKDAVINISPGNPLISEVVAVNVLAGITGSASGGLTIALEALGETYAQLAQQYSINPEWMHRLASMASGGFDSLPHNGAVITLLTICGLSHKQSYKDIAMVSLVIP 443
BLAST of mRNA_C-australica_Contig_10264.1.1 vs. uniprot
Match: A0A7Y5SHA6_9BACT (GntP family permease n=1 Tax=Pirellulales bacterium TaxID=2715253 RepID=A0A7Y5SHA6_9BACT) HSP 1 Score: 321 bits (823), Expect = 7.780e-105 Identity = 165/273 (60.44%), Postives = 202/273 (73.99%), Query Frame = 1 Query: 4 YFGTTAFAARVLGLTAATMMVGGGALWLNWRLRAARRAGEGYGTGHTREPEALDGDVPGFWTALLPIVAVIGINLVMVRYVMPGWDTGYLGTDAYGNTDFESVRGLWGIIPALLIAGLLVAAVHFRSRAGLNRTLTDGAMGSLLPMFNTASEVGYGTTIATLAAFAVVKESVLNISPGNPLISEMVAVNVLAGITGSASGGLGIALSALGETYNELAASLGVNPEFMHRIASMSSGGFDSLPHNGAVITLLTICGLTHRQAYPDIAVVSLLIP 822 YF TTAFAA LG+ +M+ G WLN R R A RAGEGYGTGH E A +G +P A LPIVAVI +N V V+P WD YL +G+T V+G+W I+ ALL+A LVAA+++RS + +N + GA GSL+P+FNTAS VGYG TIA+LAAFA VK VL ISPGNPL+SE VA+++LAGITGSASGGL IAL ALG TY +LA G++PE MHR+A+M+SGG D+LPHNGAVITLLTICGLTHRQ+Y DIAVVS+++P Sbjct: 172 YFKTTAFAAPALGMIGGLLMLAAGMAWLNRRARRAARAGEGYGTGHVNESAAPEGGLPSLAAACLPIVAVIALNYVFAEQVIPRWDASYLTEAKFGSTSLSEVQGIWSILAALLVAIGLVAALNYRSLSAMNDAVGKGAAGSLVPIFNTASVVGYGATIASLAAFAAVKSWVLGISPGNPLVSEAVAISILAGITGSASGGLSIALEALGGTYYQLAIDTGISPELMHRVAAMASGGLDTLPHNGAVITLLTICGLTHRQSYKDIAVVSVIVP 444
BLAST of mRNA_C-australica_Contig_10264.1.1 vs. uniprot
Match: A0A7V2WR93_9GAMM (GntP family permease n=1 Tax=Oceanospirillales bacterium TaxID=1914300 RepID=A0A7V2WR93_9GAMM) HSP 1 Score: 320 bits (819), Expect = 2.940e-104 Identity = 164/277 (59.21%), Postives = 209/277 (75.45%), Query Frame = 1 Query: 1 SYFGTTAFAARVLGLTAATMMVGGGALWLNWRLRAARRAGEGYGTGHTREPEA-LDGDVPGFWTALLPIVAVIGINLVMVRYVMPGWDTGYLGTDAYGNTDFESVRGLWGIIPALLIAGLLVAAVHFRSRAGLNRTLTDGAMGSLLPMFNTASEVGYGTTIATLAAFAVVKESVLNISPGNPLISEMVAVNVLAGITGSASGGLGIALSALGETYNELAASLGVNPEFMHRIASMSSGGFDSLPHNGAVITLLTICGLTHRQAYPDIAVVSLLIPFL 828 SYFGTT +AA ++G A +++ G LW+N+R+ ++ EGYG HT EPE + +P F TA+LPIV+VI IN + ++++P WD YL D +GN V +W +I +L A L+V + + LN++LT GAMGSLLP FNT SEVGYG TIA LAAFA+VKE+VLNISPGNPLISE+VA+NVLAGITGSASGGL IAL ALG+TYN+LA + + E+MHR+ASM+SGGFDSLPHNGAVITLLTICGL+H+Q+Y DIA+VSL+IP L Sbjct: 172 SYFGTTIYAAPIIGTVAGLLIMTLGVLWINFRVAGSKA--EGYGQNHTNEPEVHAESSLPSFVTAILPIVSVIVINYIFTKHIIPNWDVSYLSEDKFGNIQLNKVASIWAMIISLFSANLVVILLFYNKFKDLNKSLTSGAMGSLLPTFNTGSEVGYGGTIAALAAFAIVKEAVLNISPGNPLISEVVAINVLAGITGSASGGLTIALGALGDTYNQLAQANNIPLEWMHRLASMASGGFDSLPHNGAVITLLTICGLSHKQSYKDIAMVSLVIPVL 446
BLAST of mRNA_C-australica_Contig_10264.1.1 vs. uniprot
Match: UPI001CBD36DB (GntP family permease n=1 Tax=Marinicella sp. NBU2979 TaxID=2873263 RepID=UPI001CBD36DB) HSP 1 Score: 318 bits (815), Expect = 1.150e-103 Identity = 166/275 (60.36%), Postives = 207/275 (75.27%), Query Frame = 1 Query: 1 SYFGTTAFAARVLGLTAATMMVGGGALWLNWRLRAARRAGEGYGTGHTREPEAL-DGDVPGFWTALLPIVAVIGINLVMVRYVMPGWDTGYLGTDAYGNTDFESVRGLWGIIPALLIAGLLVAAVHFRSRAGLNRTLTDGAMGSLLPMFNTASEVGYGTTIATLAAFAVVKESVLNISPGNPLISEMVAVNVLAGITGSASGGLGIALSALGETYNELAASLGVNPEFMHRIASMSSGGFDSLPHNGAVITLLTICGLTHRQAYPDIAVVSLLIP 822 SYFGT +AA V+GL A M+ GG W+NWRL+ EGYG GH+ EP A D +P ALLPIV V+ N V+ + ++P WDT YL +D +GN + ++ +W +I AL++A L V A +++ +NR+LT GAMGS+LP FNTASEVGYG TIA+L AF +VKE+V+NISP NPLISE+VAVNVLAGITGSASGGL IAL ALG TY +LA +NPE+MHR+ASM+SGGFDSLPHNGAVITLLTICGL+HRQ+Y DI +VSL+IP Sbjct: 171 SYFGTDMYAAPVIGLLAGMAMMLGGLAWINWRLK--NTDSEGYGDGHSNEPVAFTDSRLPHLMVALLPIVVVVTANYVLQKIMIPTWDTSYLASDKFGNIEVGKLKSIWSMIMALMLAILTVLACNWQKIKDINRSLTQGAMGSMLPTFNTASEVGYGGTIASLGAFLLVKEAVINISPENPLISEVVAVNVLAGITGSASGGLTIALEALGNTYADLAQQFSINPEWMHRLASMASGGFDSLPHNGAVITLLTICGLSHRQSYKDIFMVSLVIP 443
BLAST of mRNA_C-australica_Contig_10264.1.1 vs. uniprot
Match: UPI0009871A04 (GntP family permease n=1 Tax=Marinicella sediminis TaxID=1792834 RepID=UPI0009871A04) HSP 1 Score: 313 bits (801), Expect = 1.580e-101 Identity = 162/275 (58.91%), Postives = 206/275 (74.91%), Query Frame = 1 Query: 1 SYFGTTAFAARVLGLTAATMMVGGGALWLNWRLRAARRAGEGYGTGHTREPEAL-DGDVPGFWTALLPIVAVIGINLVMVRYVMPGWDTGYLGTDAYGNTDFESVRGLWGIIPALLIAGLLVAAVHFRSRAGLNRTLTDGAMGSLLPMFNTASEVGYGTTIATLAAFAVVKESVLNISPGNPLISEMVAVNVLAGITGSASGGLGIALSALGETYNELAASLGVNPEFMHRIASMSSGGFDSLPHNGAVITLLTICGLTHRQAYPDIAVVSLLIP 822 SYFGT +AA ++GL A M+ GG WLN R++ R EGYG H+ EP D +PG T+L PI+ V+ N V+ + ++P WDT YLG++ +G + V+ +W +I ALL+A L V A+H++ +N T+T GAMGS+LP FNTASEVGYG TIA+L AF +VK++V+NISP NPLISE+VAVNVLAGITGSASGGL IAL ALG TY +LA +NPE+MHR+ASM+SGGFDSLPHNGAVITLLTICGL+HRQ+Y DI +VSL+IP Sbjct: 172 SYFGTDMYAAPLIGLLAGLGMMTGGLAWLNHRIKKYRE--EGYGDNHSNEPVVTEDRLLPGLLTSLAPILVVVLANFVLQKLIIPAWDTSYLGSEKFGQIEVGKVKSIWSMIIALLMANLAVVALHWKKLTDINGTMTKGAMGSMLPTFNTASEVGYGGTIASLGAFLLVKDAVINISPQNPLISEVVAVNVLAGITGSASGGLTIALEALGSTYAQLAEQFSINPEWMHRLASMASGGFDSLPHNGAVITLLTICGLSHRQSYKDIFMVSLVIP 444
BLAST of mRNA_C-australica_Contig_10264.1.1 vs. uniprot
Match: A0A4R6XKH4_9GAMM (H+/gluconate symporter-like permease n=1 Tax=Marinicella litoralis TaxID=644220 RepID=A0A4R6XKH4_9GAMM) HSP 1 Score: 307 bits (787), Expect = 1.980e-99 Identity = 157/275 (57.09%), Postives = 208/275 (75.64%), Query Frame = 1 Query: 1 SYFGTTAFAARVLGLTAATMMVGGGALWLNWRLRAARRAGEGYGTGHTREPEAL-DGDVPGFWTALLPIVAVIGINLVMVRYVMPGWDTGYLGTDAYGNTDFESVRGLWGIIPALLIAGLLVAAVHFRSRAGLNRTLTDGAMGSLLPMFNTASEVGYGTTIATLAAFAVVKESVLNISPGNPLISEMVAVNVLAGITGSASGGLGIALSALGETYNELAASLGVNPEFMHRIASMSSGGFDSLPHNGAVITLLTICGLTHRQAYPDIAVVSLLIP 822 SYFGT +AA V+GL+A M+ GG W+N R+ A + EGYG H+ EP + + ++P W AL+PI+ V+ N ++ + V+P W+T YL D +GN D V+ +W +I AL++A + V A+++ + +N ++T GAMGS+LP FNTASEVGYG TIA+L AF +VK++V+NISP NPLISE+VAVNVLAGITGSASGGL IAL ALG TY +LA +NPE+MHR+ASM+SGGFDSLPHNGAVITLLTICGL+H+Q+Y DI +VSL+IP Sbjct: 172 SYFGTDMYAAPVIGLSAGLAMMLGGLWWINRRINAYKA--EGYGDNHSNEPILVQEQNLPSIWVALMPIIVVVLANFLLQKMVIPAWNTEYLSADKFGNMDVSKVKSIWSMIMALIMAVITVVALNWNKFSDVNGSMTKGAMGSMLPTFNTASEVGYGGTIASLGAFLLVKDAVINISPENPLISEVVAVNVLAGITGSASGGLTIALEALGGTYAQLAEQFSINPEWMHRLASMASGGFDSLPHNGAVITLLTICGLSHKQSYKDIFMVSLVIP 444
BLAST of mRNA_C-australica_Contig_10264.1.1 vs. uniprot
Match: A0A847DVC8_9BURK (GntP family permease n=1 Tax=Limnobacter sp. TaxID=2003368 RepID=A0A847DVC8_9BURK) HSP 1 Score: 299 bits (766), Expect = 5.180e-96 Identity = 163/294 (55.44%), Postives = 208/294 (70.75%), Query Frame = 1 Query: 4 YFGTTAFAARVLGLTAATMMVGGGALWLNWRLRAARRAGEGYG----TGHTR------EPEALDG---------DVPGFWTALLPIVAVIGINLVMVRYVMPGWDTGYLGTDAYGNTDFESVRGLWGIIPALLIAGLLVAAVHFRSRAGLNRTLTDGAMGSLLPMFNTASEVGYGTTIATLAAFAVVKESVLNISPGNPLISEMVAVNVLAGITGSASGGLGIALSALGETYNELAASLGVNPEFMHRIASMSSGGFDSLPHNGAVITLLTICGLTHRQAYPDIAVVSLLIPFL 828 +FGTT FAA LGL AA +M GG LWLN R RAA GE Y TG TR +P+A+DG ++PG AL+PIV VI +N ++ V+P +T YL D YG T +VRG+W +I AL+I+ +++ ++ + A + ++ G MGSLLP+FNTASEVGYG TIA+L AF V++++VLNISPGNPL+S VAVNVLAG+TGSASGGL IAL LGETY +LA G++PE MHR+ASMSSGGFD+LPHNGAVITLL ICGLTHRQ+Y DI +V+++ P L Sbjct: 171 FFGTTPFAAPGLGLIAAAIMFTGGMLWLNRRARAAAARGENYADSDTTGSTRGDSSVADPDAIDGGAVGTRAASELPGIVVALVPIVLVIALNALLTYVVIPAMNTEYLAQDRYGATHIGTVRGIWALIGALVISIVVLILMNLKRLADVKSSINAGTMGSLLPIFNTASEVGYGATIASLPAFIVIRDAVLNISPGNPLVSLAVAVNVLAGVTGSASGGLSIALQTLGETYMQLAQQFGIDPEVMHRVASMSSGGFDALPHNGAVITLLAICGLTHRQSYLDIFMVTIVAPLL 464 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10264.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10264.1.1 >prot_C-australica_Contig_10264.1.1 ID=prot_C-australica_Contig_10264.1.1|Name=mRNA_C-australica_Contig_10264.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=276bp SYFGTTAFAARVLGLTAATMMVGGGALWLNWRLRAARRAGEGYGTGHTREback to top mRNA from alignment at C-australica_Contig_10264:1..828- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10264.1.1 ID=mRNA_C-australica_Contig_10264.1.1|Name=mRNA_C-australica_Contig_10264.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=828bp|location=Sequence derived from alignment at C-australica_Contig_10264:1..828- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10264:1..828- >mRNA_C-australica_Contig_10264.1.1 ID=mRNA_C-australica_Contig_10264.1.1|Name=mRNA_C-australica_Contig_10264.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=828bp|location=Sequence derived from alignment at C-australica_Contig_10264:1..828- (Chrysoparadoxa australica CS_1217)back to top |