mRNA_C-australica_Contig_1024.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1024.1.1
Unique NamemRNA_C-australica_Contig_1024.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_1024.1.1 vs. uniprot
Match: D8LCU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCU7_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 8.030e-42
Identity = 80/144 (55.56%), Postives = 101/144 (70.14%), Query Frame = 1
Query:    1 PSELTQAHLDQTAQLNLMVQRYYHGDWSELLGELQLCFVLFLMLQSLHGFERWQRLVSLLCRCERAIMTQPQLFTVFLRVLHAHLKLVPSDFFVTELSKDNFLVPSLSSLLQLILEEGGSEMDPALVDGAKRLLRFLQQHFDIF 432
            P ++T+ ++D +  L + +   + G W ELLGELQL FVLF+ L SL GF  WQ L +LLCRC  A+ T P LFT F+R+LHAHLKLVP DFF  ELSKDNFLVP LS+LLQ +L +    + P L+D  KRLL+FLQQ F +F
Sbjct:  239 PEDVTKRNMDGSEALRMWIATDFGGSWVELLGELQLSFVLFVSLSSLGGFRHWQALSALLCRCGDALKTDPALFTAFIRMLHAHLKLVPEDFFDVELSKDNFLVPCLSALLQNVLPD--ESLAPPLLDAGKRLLKFLQQRFGLF 380          
BLAST of mRNA_C-australica_Contig_1024.1.1 vs. uniprot
Match: A0A6H5JER9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER9_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 8.890e-34
Identity = 66/112 (58.93%), Postives = 81/112 (72.32%), Query Frame = 1
Query:    1 PSELTQAHLDQTAQLNLMVQRYYHGDWSELLGELQLCFVLFLMLQSLHGFERWQRLVSLLCRCERAIMTQPQLFTVFLRVLHAHLKLVPSDFFVTELSKDNFLVPSLSSLLQ 336
            P ++T+ ++D +  L + +   + G W ELLGELQL FVLF+ L SL GF  WQ L +LLCRC  A+ T P LFT F+R+LHAHLKLVP DFF  ELSKDNFLVP LS+LLQ
Sbjct:  234 PEDVTKLNMDGSEALRMWIAADFGGSWVELLGELQLSFVLFVSLSSLGGFRHWQALSALLCRCGDALKTDPALFTAFIRMLHAHLKLVPEDFFDVELSKDNFLVPCLSALLQ 345          
BLAST of mRNA_C-australica_Contig_1024.1.1 vs. uniprot
Match: A0A6G0XET0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XET0_9STRA)

HSP 1 Score: 123 bits (309), Expect = 4.830e-31
Identity = 61/141 (43.26%), Postives = 92/141 (65.25%), Query Frame = 1
Query:    1 PSELTQAHLDQTAQLNLMVQRYYHGDWSELLGELQLCFVLFLMLQSLHGFERWQRLVSLLCRCERAIMTQPQLFTVFLRVLHAHLKLVPSDFFVTELSKDNFLVPSLSSLLQLILEEGGSEMDPALVDGAKRLLRFLQQHF 423
            P +LT  HLD +  L  +++ YY  DW  LLGELQL FVLFL++ S     +W++ V LLC CE A +T+P+LF+ FL+V+H HL+ V  DFF  E++ +NF+  SL+SL +++ ++    +DP L+  A +L  FL+  F
Sbjct:  185 PQDLTAYHLDSSEHLEYLLETYYKNDWKALLGELQLAFVLFLLISSYDALNQWKQFVWLLCSCENAAITRPELFSAFLQVIHVHLEQVGPDFFEDEVANENFIKASLASLFEILHDD---TLDPKLLQRATKLKIFLKDRF 322          
BLAST of mRNA_C-australica_Contig_1024.1.1 vs. uniprot
Match: W4HBW6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HBW6_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.040e-30
Identity = 61/141 (43.26%), Postives = 93/141 (65.96%), Query Frame = 1
Query:    7 ELTQAHLDQTAQLNLMVQRYYHGDWSELLGELQLCFVLFLMLQSLHGFERWQRLVSLLCRCERAIMTQPQLFTVFLRVLHAHLKLVPSDFFVTELSKDNFLVPSLSSLLQLILEEGGSEMDPALVDGAKRLLRFLQQHFDI 429
            +LT  H+D +  L  ++  ++H DW  LLGELQL FVLFL+L SL    +W++ V LLC CE A+ TQP LF  FL+++H HL+ V +DFF  E++ DNF+  SL+SL +++ ++    +D  L+  A +L +FL+Q F +
Sbjct:  191 DLTLYHVDSSEHLEWLLSTHFHNDWHALLGELQLSFVLFLLLSSLDALHQWKQFVWLLCSCEHAVTTQPALFAAFLQLMHVHLEQVGADFFQDEIAHDNFIKTSLASLFEILHDD---TLDAKLLQRAAKLEQFLKQRFQL 328          
BLAST of mRNA_C-australica_Contig_1024.1.1 vs. uniprot
Match: A0A1V9ZM92_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZM92_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.680e-30
Identity = 63/140 (45.00%), Postives = 96/140 (68.57%), Query Frame = 1
Query:    4 SELTQAHLDQTAQLNLMVQRYYHGDWSELLGELQLCFVLFLMLQSLHGFERWQRLVSLLCRCERAIMTQPQLFTVFLRVLHAHLKLVPSDFFVTELSKDNFLVPSLSSLLQLILEEGGSEMDPALVDGAKRLLRFLQQHF 423
            +E+TQ HLD +  L  +++ +Y  DW ELLGELQL FVLFL + SL   ++W++LV LLC  E A+ T+P+LFT FL ++HAHL  V ++FF  E+++ NFL  SL+SL +++ ++    +D  L+  +++L  FLQQ F
Sbjct:  185 AEVTQYHLDSSEHLAFLLETHYGNDWKELLGELQLAFVLFLFISSLDALQQWKQLVWLLCSSEAAVATKPELFTSFLALMHAHLDQVGAEFFQDEVAEHNFLQASLASLFEILHDD---TLDAKLLAKSRKLQAFLQQKF 321          
BLAST of mRNA_C-australica_Contig_1024.1.1 vs. uniprot
Match: A0A835YNB4_9STRA (AAR2 protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNB4_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.470e-28
Identity = 53/113 (46.90%), Postives = 77/113 (68.14%), Query Frame = 1
Query:    1 PSELTQAHLDQTAQLNLMVQRYYHGDWSELLGELQLCFVLFLMLQSLHGFERWQRLVSLLCRCERAIMTQPQLFTVFLRVLHAHLKLVPSDFFVTELSKDNFLVPSLSSLLQL 339
            P +L+   L+   ++  +V R +HG W +LLGE+QL F+LFL + SL  + +WQ L + LCRCE A+ +    F  ++RVLHA LKLVP DFF TELS++NFL  SL+++ Q+
Sbjct:   14 PPQLSPLILNFALKVQELVTRRFHGSWHDLLGEVQLSFILFLYISSLAAYRQWQALTAALCRCETAVESNGPFFVAYIRVLHAQLKLVPEDFFATELSRENFLQSSLTAMFQV 126          
BLAST of mRNA_C-australica_Contig_1024.1.1 vs. uniprot
Match: A0A067CU87_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067CU87_SAPPC)

HSP 1 Score: 114 bits (286), Expect = 9.800e-28
Identity = 56/142 (39.44%), Postives = 96/142 (67.61%), Query Frame = 1
Query:    4 SELTQAHLDQTAQLNLMVQRYYHGDWSELLGELQLCFVLFLMLQSLHGFERWQRLVSLLCRCERAIMTQPQLFTVFLRVLHAHLKLVPSDFFVTELSKDNFLVPSLSSLLQLILEEGGSEMDPALVDGAKRLLRFLQQHFDI 429
            +E+T  H+D +  L  ++  +++ DW EL+GELQL FVLFL++ SL    +W+++V LLC  E A+ T P LF  FL+++H HL+ V ++FF  E++++NFL  SL+SL +++ ++    + P L+  +++L  FLQQ F++
Sbjct:  181 AEVTMFHVDSSEHLEQLLAEHFNNDWKELVGELQLSFVLFLLISSLDALTQWKQMVWLLCSSEAAVETMPDLFIAFLKLMHTHLEQVGAEFFQDEVAQENFLQASLASLFEILHDD---TLHPKLLAASQKLQVFLQQKFNL 319          
BLAST of mRNA_C-australica_Contig_1024.1.1 vs. uniprot
Match: A0A485KTB0_9STRA (Aste57867_11327 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KTB0_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.120e-27
Identity = 58/141 (41.13%), Postives = 90/141 (63.83%), Query Frame = 1
Query:    7 ELTQAHLDQTAQLNLMVQRYYHGDWSELLGELQLCFVLFLMLQSLHGFERWQRLVSLLCRCERAIMTQPQLFTVFLRVLHAHLKLVPSDFFVTELSKDNFLVPSLSSLLQLILEEGGSEMDPALVDGAKRLLRFLQQHFDI 429
            +LT  HLD +  L  +++  Y  DW  LLGELQL FVLFL++ SL    +W++ V LLC CE A+ T+P LF  FL+++H HL+ V +DFF  E++ +NF+  SL+SL +++ ++    +D  L+  A +L  FL+  F +
Sbjct:  186 DLTMYHLDSSEHLEGLLRTQYGCDWQALLGELQLSFVLFLLISSLDALNQWKQFVWLLCSCEHAVTTRPDLFIAFLQLIHVHLEQVGADFFQDEVANENFIKASLASLFEILNDD---TLDSRLLQRATKLKIFLKDRFQL 323          
BLAST of mRNA_C-australica_Contig_1024.1.1 vs. uniprot
Match: A0A024USC4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024USC4_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.230e-27
Identity = 56/142 (39.44%), Postives = 93/142 (65.49%), Query Frame = 1
Query:    4 SELTQAHLDQTAQLNLMVQRYYHGDWSELLGELQLCFVLFLMLQSLHGFERWQRLVSLLCRCERAIMTQPQLFTVFLRVLHAHLKLVPSDFFVTELSKDNFLVPSLSSLLQLILEEGGSEMDPALVDGAKRLLRFLQQHFDI 429
            S+LT+ H+D +  L  +++ +Y  DW  LLGE+QL FVLFL + SL    +W++ V +LC CE A+ T+P+LF  FL++   HL+ V +DFF  EL+ DNF+  SL+SL +++ ++    ++  L++ A +L +FL+  F +
Sbjct:  188 SDLTRYHVDSSEHLEWLLKTHYSNDWRALLGEVQLSFVLFLFISSLDALHQWKQFVWMLCSCEDAVTTRPELFAAFLQLTQVHLEQVGTDFFQDELATDNFIKASLASLFEILHDD---TLNDKLLERAAKLKQFLKDRFQL 326          
BLAST of mRNA_C-australica_Contig_1024.1.1 vs. uniprot
Match: A0A2D4C9J1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9J1_PYTIN)

HSP 1 Score: 112 bits (281), Expect = 6.320e-27
Identity = 63/141 (44.68%), Postives = 88/141 (62.41%), Query Frame = 1
Query:    7 ELTQAHLDQTAQLNLMVQRYYHGDWSELLGELQLCFVLFLMLQSLHGFERWQRLVSLLCRCERAIMTQPQLFTVFLRVLHAHLKLVPSDFFVTELSKDNFLVPSLSSLLQLILEEGGSEMDPALVDGAKRLLRFLQQHFDI 429
            E T    D++  L  +++  +   W+ELLGE QL FV+FL L SL   E+W++++ +LC CE A++TQP LF  FLR L AHLK +P +FF  EL++ NFL P ++SLL+L+     +E  P   D  KRLLR     FDI
Sbjct:  220 ERTAYLFDKSKMLEELLETSFEHKWTELLGEFQLAFVVFLQLSSLAALEQWKQMLLMLCSCEHALVTQPALFEAFLRSLRAHLKQIPPEFFQEELTEQNFLRPCMASLLELL----AAEDTPVSADRLKRLLR---SRFDI 353          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1024.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCU7_ECTSI8.030e-4255.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JER9_9PHAE8.890e-3458.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6G0XET0_9STRA4.830e-3143.26Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W4HBW6_9STRA1.040e-3043.26Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A1V9ZM92_9STRA1.680e-3045.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A835YNB4_9STRA2.470e-2846.90AAR2 protein-domain-containing protein n=1 Tax=Tri... [more]
A0A067CU87_SAPPC9.800e-2839.44Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A485KTB0_9STRA4.120e-2741.13Aste57867_11327 protein n=1 Tax=Aphanomyces stella... [more]
A0A024USC4_9STRA4.230e-2739.44Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A2D4C9J1_PYTIN6.320e-2744.68Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1024contigC-australica_Contig_1024:64..810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LCU7
PFAMsAAR2
Model size432
Max annot lvl2759|Eukaryota
KEGG koko:K00411,ko:K03260,ko:K13205
KEGG Pathwayko00190,ko01100,ko02020,ko03013,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,ko05416,map00190,map01100,map02020,map03013,map04260,map04714,map04932,map05010,map05012,map05016,map05416
KEGG ModuleM00151,M00152,M00428
Hectar predicted targeting categoryother localisation
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0120114,GO:1901360,GO:1990904
Exons4
Evalue1.32e-42
EggNOG OGsKOG3937@1|root,KOG3937@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_006950.1
EC1.10.2.2
Descriptionspliceosomal tri-snRNP complex assembly
Cds size432
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586761.2125976-CDS-C-australica_Contig_1024:63..1571682586761.2125976-CDS-C-australica_Contig_1024:63..157Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1024 64..157 +
1682586761.2250078-CDS-C-australica_Contig_1024:255..4221682586761.2250078-CDS-C-australica_Contig_1024:255..422Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1024 256..422 +
1682586761.2357621-CDS-C-australica_Contig_1024:514..5891682586761.2357621-CDS-C-australica_Contig_1024:514..589Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1024 515..589 +
1682586761.2539172-CDS-C-australica_Contig_1024:714..8101682586761.2539172-CDS-C-australica_Contig_1024:714..810Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1024 715..810 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1024.1.1prot_C-australica_Contig_1024.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1024 64..810 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1024.1.1

>prot_C-australica_Contig_1024.1.1 ID=prot_C-australica_Contig_1024.1.1|Name=mRNA_C-australica_Contig_1024.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=144bp
PSELTQAHLDQTAQLNLMVQRYYHGDWSELLGELQLCFVLFLMLQSLHGF
ERWQRLVSLLCRCERAIMTQPQLFTVFLRVLHAHLKLVPSDFFVTELSKD
NFLVPSLSSLLQLILEEGGSEMDPALVDGAKRLLRFLQQHFDIF
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mRNA from alignment at C-australica_Contig_1024:64..810+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1024.1.1 ID=mRNA_C-australica_Contig_1024.1.1|Name=mRNA_C-australica_Contig_1024.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=747bp|location=Sequence derived from alignment at C-australica_Contig_1024:64..810+ (Chrysoparadoxa australica CS_1217)
CCCTCTGAGCTGACCCAGGCTCATCTGGATCAAACCGCACAGCTAAACCT AATGGTTCAGCGATATTACCATGGTGACTGGTCAGAATTGCTCGGTTAGT GCTTGGTGCTGCACTTGGTGGCATGAGAGATACTTTGCTTTGTGAAGCCA AGGCTGCGATCTCACTCACTTCTTATGTCACTCTAATGTCAGGCGAGCTG CAACTATGCTTTGTGCTGTTTCTGATGCTGCAGTCCCTGCATGGCTTTGA GCGCTGGCAGCGATTAGTCTCTCTACTGTGCAGATGTGAAAGAGCCATTA TGACGCAGCCTCAACTGTTCACAGTTTTCCTTCGTGTCCTGCACGCACAC CTCAAGCTGGTATGGCGGAGAGACACCCCAGCCTATCCACCCTCTATACT GAACTTTACCTAATGCAAAAGCAAGCGCTAAGCTATCTCATCCCTTCTCA GGTGCCAAGTGATTTCTTTGTCACAGAGCTTTCAAAGGACAACTTCCTGG TGCCTTCACTATCGTCATTGCTGCAGGTGAGAGAGGGGAGGATTCGGTGG AGTTTTGCTTGGTCGTTGATCAAAACTAAAACCCTAACCTGTTTGTAGTT GGTGCCTCTCACCCATCTCCTCCTTCTGTTCTTTCTGTTCATTCTTCCCA GCTTATTCTTGAGGAGGGCGGCAGTGAGATGGACCCTGCATTAGTGGACG GTGCAAAGAGACTCTTACGCTTCCTTCAGCAGCATTTTGATATATTT
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Coding sequence (CDS) from alignment at C-australica_Contig_1024:64..810+

>mRNA_C-australica_Contig_1024.1.1 ID=mRNA_C-australica_Contig_1024.1.1|Name=mRNA_C-australica_Contig_1024.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=432bp|location=Sequence derived from alignment at C-australica_Contig_1024:64..810+ (Chrysoparadoxa australica CS_1217)
CCCTCTGAGCTGACCCAGGCTCATCTGGATCAAACCGCACAGCTAAACCT
AATGGTTCAGCGATATTACCATGGTGACTGGTCAGAATTGCTCGGCGAGC
TGCAACTATGCTTTGTGCTGTTTCTGATGCTGCAGTCCCTGCATGGCTTT
GAGCGCTGGCAGCGATTAGTCTCTCTACTGTGCAGATGTGAAAGAGCCAT
TATGACGCAGCCTCAACTGTTCACAGTTTTCCTTCGTGTCCTGCACGCAC
ACCTCAAGCTGGTGCCAAGTGATTTCTTTGTCACAGAGCTTTCAAAGGAC
AACTTCCTGGTGCCTTCACTATCGTCATTGCTGCAGCTTATTCTTGAGGA
GGGCGGCAGTGAGATGGACCCTGCATTAGTGGACGGTGCAAAGAGACTCT
TACGCTTCCTTCAGCAGCATTTTGATATATTT
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