mRNA_C-australica_Contig_1024.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1024.1.1 vs. uniprot
Match: D8LCU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCU7_ECTSI) HSP 1 Score: 154 bits (389), Expect = 8.030e-42 Identity = 80/144 (55.56%), Postives = 101/144 (70.14%), Query Frame = 1 Query: 1 PSELTQAHLDQTAQLNLMVQRYYHGDWSELLGELQLCFVLFLMLQSLHGFERWQRLVSLLCRCERAIMTQPQLFTVFLRVLHAHLKLVPSDFFVTELSKDNFLVPSLSSLLQLILEEGGSEMDPALVDGAKRLLRFLQQHFDIF 432 P ++T+ ++D + L + + + G W ELLGELQL FVLF+ L SL GF WQ L +LLCRC A+ T P LFT F+R+LHAHLKLVP DFF ELSKDNFLVP LS+LLQ +L + + P L+D KRLL+FLQQ F +F Sbjct: 239 PEDVTKRNMDGSEALRMWIATDFGGSWVELLGELQLSFVLFVSLSSLGGFRHWQALSALLCRCGDALKTDPALFTAFIRMLHAHLKLVPEDFFDVELSKDNFLVPCLSALLQNVLPD--ESLAPPLLDAGKRLLKFLQQRFGLF 380
BLAST of mRNA_C-australica_Contig_1024.1.1 vs. uniprot
Match: A0A6H5JER9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER9_9PHAE) HSP 1 Score: 130 bits (327), Expect = 8.890e-34 Identity = 66/112 (58.93%), Postives = 81/112 (72.32%), Query Frame = 1 Query: 1 PSELTQAHLDQTAQLNLMVQRYYHGDWSELLGELQLCFVLFLMLQSLHGFERWQRLVSLLCRCERAIMTQPQLFTVFLRVLHAHLKLVPSDFFVTELSKDNFLVPSLSSLLQ 336 P ++T+ ++D + L + + + G W ELLGELQL FVLF+ L SL GF WQ L +LLCRC A+ T P LFT F+R+LHAHLKLVP DFF ELSKDNFLVP LS+LLQ Sbjct: 234 PEDVTKLNMDGSEALRMWIAADFGGSWVELLGELQLSFVLFVSLSSLGGFRHWQALSALLCRCGDALKTDPALFTAFIRMLHAHLKLVPEDFFDVELSKDNFLVPCLSALLQ 345
BLAST of mRNA_C-australica_Contig_1024.1.1 vs. uniprot
Match: A0A6G0XET0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XET0_9STRA) HSP 1 Score: 123 bits (309), Expect = 4.830e-31 Identity = 61/141 (43.26%), Postives = 92/141 (65.25%), Query Frame = 1 Query: 1 PSELTQAHLDQTAQLNLMVQRYYHGDWSELLGELQLCFVLFLMLQSLHGFERWQRLVSLLCRCERAIMTQPQLFTVFLRVLHAHLKLVPSDFFVTELSKDNFLVPSLSSLLQLILEEGGSEMDPALVDGAKRLLRFLQQHF 423 P +LT HLD + L +++ YY DW LLGELQL FVLFL++ S +W++ V LLC CE A +T+P+LF+ FL+V+H HL+ V DFF E++ +NF+ SL+SL +++ ++ +DP L+ A +L FL+ F Sbjct: 185 PQDLTAYHLDSSEHLEYLLETYYKNDWKALLGELQLAFVLFLLISSYDALNQWKQFVWLLCSCENAAITRPELFSAFLQVIHVHLEQVGPDFFEDEVANENFIKASLASLFEILHDD---TLDPKLLQRATKLKIFLKDRF 322
BLAST of mRNA_C-australica_Contig_1024.1.1 vs. uniprot
Match: W4HBW6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HBW6_9STRA) HSP 1 Score: 122 bits (307), Expect = 1.040e-30 Identity = 61/141 (43.26%), Postives = 93/141 (65.96%), Query Frame = 1 Query: 7 ELTQAHLDQTAQLNLMVQRYYHGDWSELLGELQLCFVLFLMLQSLHGFERWQRLVSLLCRCERAIMTQPQLFTVFLRVLHAHLKLVPSDFFVTELSKDNFLVPSLSSLLQLILEEGGSEMDPALVDGAKRLLRFLQQHFDI 429 +LT H+D + L ++ ++H DW LLGELQL FVLFL+L SL +W++ V LLC CE A+ TQP LF FL+++H HL+ V +DFF E++ DNF+ SL+SL +++ ++ +D L+ A +L +FL+Q F + Sbjct: 191 DLTLYHVDSSEHLEWLLSTHFHNDWHALLGELQLSFVLFLLLSSLDALHQWKQFVWLLCSCEHAVTTQPALFAAFLQLMHVHLEQVGADFFQDEIAHDNFIKTSLASLFEILHDD---TLDAKLLQRAAKLEQFLKQRFQL 328
BLAST of mRNA_C-australica_Contig_1024.1.1 vs. uniprot
Match: A0A1V9ZM92_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZM92_9STRA) HSP 1 Score: 122 bits (305), Expect = 1.680e-30 Identity = 63/140 (45.00%), Postives = 96/140 (68.57%), Query Frame = 1 Query: 4 SELTQAHLDQTAQLNLMVQRYYHGDWSELLGELQLCFVLFLMLQSLHGFERWQRLVSLLCRCERAIMTQPQLFTVFLRVLHAHLKLVPSDFFVTELSKDNFLVPSLSSLLQLILEEGGSEMDPALVDGAKRLLRFLQQHF 423 +E+TQ HLD + L +++ +Y DW ELLGELQL FVLFL + SL ++W++LV LLC E A+ T+P+LFT FL ++HAHL V ++FF E+++ NFL SL+SL +++ ++ +D L+ +++L FLQQ F Sbjct: 185 AEVTQYHLDSSEHLAFLLETHYGNDWKELLGELQLAFVLFLFISSLDALQQWKQLVWLLCSSEAAVATKPELFTSFLALMHAHLDQVGAEFFQDEVAEHNFLQASLASLFEILHDD---TLDAKLLAKSRKLQAFLQQKF 321
BLAST of mRNA_C-australica_Contig_1024.1.1 vs. uniprot
Match: A0A835YNB4_9STRA (AAR2 protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNB4_9STRA) HSP 1 Score: 110 bits (275), Expect = 2.470e-28 Identity = 53/113 (46.90%), Postives = 77/113 (68.14%), Query Frame = 1 Query: 1 PSELTQAHLDQTAQLNLMVQRYYHGDWSELLGELQLCFVLFLMLQSLHGFERWQRLVSLLCRCERAIMTQPQLFTVFLRVLHAHLKLVPSDFFVTELSKDNFLVPSLSSLLQL 339 P +L+ L+ ++ +V R +HG W +LLGE+QL F+LFL + SL + +WQ L + LCRCE A+ + F ++RVLHA LKLVP DFF TELS++NFL SL+++ Q+ Sbjct: 14 PPQLSPLILNFALKVQELVTRRFHGSWHDLLGEVQLSFILFLYISSLAAYRQWQALTAALCRCETAVESNGPFFVAYIRVLHAQLKLVPEDFFATELSRENFLQSSLTAMFQV 126
BLAST of mRNA_C-australica_Contig_1024.1.1 vs. uniprot
Match: A0A067CU87_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067CU87_SAPPC) HSP 1 Score: 114 bits (286), Expect = 9.800e-28 Identity = 56/142 (39.44%), Postives = 96/142 (67.61%), Query Frame = 1 Query: 4 SELTQAHLDQTAQLNLMVQRYYHGDWSELLGELQLCFVLFLMLQSLHGFERWQRLVSLLCRCERAIMTQPQLFTVFLRVLHAHLKLVPSDFFVTELSKDNFLVPSLSSLLQLILEEGGSEMDPALVDGAKRLLRFLQQHFDI 429 +E+T H+D + L ++ +++ DW EL+GELQL FVLFL++ SL +W+++V LLC E A+ T P LF FL+++H HL+ V ++FF E++++NFL SL+SL +++ ++ + P L+ +++L FLQQ F++ Sbjct: 181 AEVTMFHVDSSEHLEQLLAEHFNNDWKELVGELQLSFVLFLLISSLDALTQWKQMVWLLCSSEAAVETMPDLFIAFLKLMHTHLEQVGAEFFQDEVAQENFLQASLASLFEILHDD---TLHPKLLAASQKLQVFLQQKFNL 319
BLAST of mRNA_C-australica_Contig_1024.1.1 vs. uniprot
Match: A0A485KTB0_9STRA (Aste57867_11327 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KTB0_9STRA) HSP 1 Score: 113 bits (282), Expect = 4.120e-27 Identity = 58/141 (41.13%), Postives = 90/141 (63.83%), Query Frame = 1 Query: 7 ELTQAHLDQTAQLNLMVQRYYHGDWSELLGELQLCFVLFLMLQSLHGFERWQRLVSLLCRCERAIMTQPQLFTVFLRVLHAHLKLVPSDFFVTELSKDNFLVPSLSSLLQLILEEGGSEMDPALVDGAKRLLRFLQQHFDI 429 +LT HLD + L +++ Y DW LLGELQL FVLFL++ SL +W++ V LLC CE A+ T+P LF FL+++H HL+ V +DFF E++ +NF+ SL+SL +++ ++ +D L+ A +L FL+ F + Sbjct: 186 DLTMYHLDSSEHLEGLLRTQYGCDWQALLGELQLSFVLFLLISSLDALNQWKQFVWLLCSCEHAVTTRPDLFIAFLQLIHVHLEQVGADFFQDEVANENFIKASLASLFEILNDD---TLDSRLLQRATKLKIFLKDRFQL 323
BLAST of mRNA_C-australica_Contig_1024.1.1 vs. uniprot
Match: A0A024USC4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024USC4_9STRA) HSP 1 Score: 113 bits (282), Expect = 4.230e-27 Identity = 56/142 (39.44%), Postives = 93/142 (65.49%), Query Frame = 1 Query: 4 SELTQAHLDQTAQLNLMVQRYYHGDWSELLGELQLCFVLFLMLQSLHGFERWQRLVSLLCRCERAIMTQPQLFTVFLRVLHAHLKLVPSDFFVTELSKDNFLVPSLSSLLQLILEEGGSEMDPALVDGAKRLLRFLQQHFDI 429 S+LT+ H+D + L +++ +Y DW LLGE+QL FVLFL + SL +W++ V +LC CE A+ T+P+LF FL++ HL+ V +DFF EL+ DNF+ SL+SL +++ ++ ++ L++ A +L +FL+ F + Sbjct: 188 SDLTRYHVDSSEHLEWLLKTHYSNDWRALLGEVQLSFVLFLFISSLDALHQWKQFVWMLCSCEDAVTTRPELFAAFLQLTQVHLEQVGTDFFQDELATDNFIKASLASLFEILHDD---TLNDKLLERAAKLKQFLKDRFQL 326
BLAST of mRNA_C-australica_Contig_1024.1.1 vs. uniprot
Match: A0A2D4C9J1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9J1_PYTIN) HSP 1 Score: 112 bits (281), Expect = 6.320e-27 Identity = 63/141 (44.68%), Postives = 88/141 (62.41%), Query Frame = 1 Query: 7 ELTQAHLDQTAQLNLMVQRYYHGDWSELLGELQLCFVLFLMLQSLHGFERWQRLVSLLCRCERAIMTQPQLFTVFLRVLHAHLKLVPSDFFVTELSKDNFLVPSLSSLLQLILEEGGSEMDPALVDGAKRLLRFLQQHFDI 429 E T D++ L +++ + W+ELLGE QL FV+FL L SL E+W++++ +LC CE A++TQP LF FLR L AHLK +P +FF EL++ NFL P ++SLL+L+ +E P D KRLLR FDI Sbjct: 220 ERTAYLFDKSKMLEELLETSFEHKWTELLGEFQLAFVVFLQLSSLAALEQWKQMLLMLCSCEHALVTQPALFEAFLRSLRAHLKQIPPEFFQEELTEQNFLRPCMASLLELL----AAEDTPVSADRLKRLLR---SRFDI 353 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1024.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1024.1.1 >prot_C-australica_Contig_1024.1.1 ID=prot_C-australica_Contig_1024.1.1|Name=mRNA_C-australica_Contig_1024.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=144bp PSELTQAHLDQTAQLNLMVQRYYHGDWSELLGELQLCFVLFLMLQSLHGFback to top mRNA from alignment at C-australica_Contig_1024:64..810+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1024.1.1 ID=mRNA_C-australica_Contig_1024.1.1|Name=mRNA_C-australica_Contig_1024.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=747bp|location=Sequence derived from alignment at C-australica_Contig_1024:64..810+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1024:64..810+ >mRNA_C-australica_Contig_1024.1.1 ID=mRNA_C-australica_Contig_1024.1.1|Name=mRNA_C-australica_Contig_1024.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=432bp|location=Sequence derived from alignment at C-australica_Contig_1024:64..810+ (Chrysoparadoxa australica CS_1217)back to top |