mRNA_C-australica_Contig_10233.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10233.1.1 vs. uniprot
Match: UPI00034A927C (ATP-dependent RecD-like DNA helicase n=4 Tax=Nocardiopsis TaxID=2013 RepID=UPI00034A927C) HSP 1 Score: 72.8 bits (177), Expect = 5.120e-12 Identity = 44/141 (31.21%), Postives = 67/141 (47.52%), Query Frame = 1 Query: 1 GMADKVIQGTLKRVEWRSP-TGVQILLVD-GEDGEAFWAFAQEQRVYVGERVELSGSWNAAPPPGRVLHVSRLVSTPPKSAQGLTDYVSQAL--ACDTTIANAIVSQFGDLTVTVLDDKPERLVDVPGIGRAAVPEFADAW 411 G V+QG L+RV + + G + VD G G+ V GE + + G W + P GR HV + P + QG+ Y+ L +A IV FG + V++++P+RL++VPG+G ADAW Sbjct: 5 GPRGAVVQGVLERVTYANEENGFTVARVDTGRGGDLLTVVGSLMGVQPGESLRMRGRWGSHPQYGRQFHVDDYTTVLPATVQGIRRYLGSGLIKGIGPKMAERIVEHFGTDALEVVEEEPDRLIEVPGLGPKRTAAIADAW 145
BLAST of mRNA_C-australica_Contig_10233.1.1 vs. uniprot
Match: A0A841IQA8_9ACTN (ATP-dependent RecD-like DNA helicase n=2 Tax=Nocardiopsis algeriensis TaxID=1478215 RepID=A0A841IQA8_9ACTN) HSP 1 Score: 72.8 bits (177), Expect = 5.140e-12 Identity = 46/156 (29.49%), Postives = 75/156 (48.08%), Query Frame = 1 Query: 16 VIQGTLKRVEWRSP-TGVQILLVD-GEDG-EAFWAFAQEQRVYVGERVELSGSWNAAPPPGRVLHVSRLVSTPPKSAQGLTDYVSQAL--ACDTTIANAIVSQFGDLTVTVLDDKPERLVDVPGIGRAAVPEFADAWRRSRTHSQSQRVMERMGLN 468 V+QG L+R+ + + TG + VD G G + V GE + + G W + P GR HV + P + QG+ Y+ L +A IV FG + V++D+PERL++VPG+G ADAW + + ++ +G++ Sbjct: 12 VVQGVLERITYANEDTGYTVARVDTGRGGSDLLTVVGSLMGVQPGEALRMQGRWGSHPQYGRQFHVDDYTTVLPATVQGIRRYLGSGLIKGIGPKMAERIVEHFGTDALDVIEDEPERLIEVPGLGPKRTRLIADAWEEQKAIKEVMVFLQGVGVS 167
BLAST of mRNA_C-australica_Contig_10233.1.1 vs. uniprot
Match: UPI0007C69029 (ATP-dependent RecD-like DNA helicase n=2 Tax=Nonomuraea TaxID=83681 RepID=UPI0007C69029) HSP 1 Score: 70.5 bits (171), Expect = 3.240e-11 Identity = 40/115 (34.78%), Postives = 63/115 (54.78%), Query Frame = 1 Query: 130 VYVGERVELSGSWNAAPPPGRVLHVSRLVSTPPKSAQGLTDYVSQAL--ACDTTIANAIVSQFGDLTVTVLDDKPERLVDVPGIGRAAVPEFADAWRRSRTHSQSQRVMERMGLN 468 V GER++L G W + P GR L V ++ P S + +T Y+ L +A+AIVSQFG+ T+ V+D +PERL DV IG + +AW + ++ V++ G++ Sbjct: 41 VQPGERLQLGGEWESHPRFGRRLAVKQVERVAPSSVRAITLYLGSGLIRGVGPRLAHAIVSQFGEQTLKVIDTEPERLRDVVNIGAIRQAQIVEAWAEQKAVAELMVVLQGFGVS 155
BLAST of mRNA_C-australica_Contig_10233.1.1 vs. uniprot
Match: A9WGW5_CHLAA (ATP-dependent RecD-like DNA helicase n=3 Tax=Chloroflexi TaxID=200795 RepID=A9WGW5_CHLAA) HSP 1 Score: 70.1 bits (170), Expect = 4.420e-11 Identity = 40/114 (35.09%), Postives = 56/114 (49.12%), Query Frame = 1 Query: 130 VYVGERVELSGSWNAAPPPGRVLHVSRLVSTPPKSAQGLTDYVSQAL--ACDTTIANAIVSQFGDLTVTVLDDKPERLVDVPGIGRAAVPEFADAWRRSRTHSQSQRVMERMGL 465 V GE++ L G W P GR HV R S P + G+ Y+ L +A I FG T+ VLD +PERL +VPG+GR A+AWR + +++ +GL Sbjct: 43 VQPGEQLSLEGEWRDHPTHGRQFHVQRYRSRLPATVDGIRRYLGSGLIKGVGPVLAKRITETFGKYTLEVLDREPERLSEVPGLGRKKAVLIAEAWRAQQRIKDLMLLLQDLGL 156
BLAST of mRNA_C-australica_Contig_10233.1.1 vs. uniprot
Match: A0A2E5HPM6_9DELT (ATP-dependent RecD-like DNA helicase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E5HPM6_9DELT) HSP 1 Score: 68.9 bits (167), Expect = 1.120e-10 Identity = 45/144 (31.25%), Postives = 74/144 (51.39%), Query Frame = 1 Query: 19 IQGTLKRVEWRSPTGVQILLVDGEDGEAFWAFAQEQRVYV---------GERVELSGSWNAAPPPGRVLHVSRLVSTPPKSAQGLTDYVSQALA--CDTTIANAIVSQFGDLTVTVLDDKPERLVDVPGIGRAAVPEFADAWRR 417 I+GTL+R+++ + G + E+ F + V V GE+++L GSW P G V + + P SA+G+ Y+ L +A+ +V +FGD T+ V+D++PERL +V GIG+ + A AW+R Sbjct: 4 IEGTLERIKYSNDEGSWCVAQLREETSGETLFKRPTLVTVVGNLLGARPGEQLKLWGSWKRHPSFGLQFDVRTVKTDVPVSAKGIEIYLGSGLVQGIGPKLASRLVEKFGDKTLDVIDNEPERLSEVEGIGQVRIERIAAAWKR 147
BLAST of mRNA_C-australica_Contig_10233.1.1 vs. uniprot
Match: A0A2V2FN29_9FIRM (ATP-dependent RecD-like DNA helicase n=1 Tax=Clostridia bacterium TaxID=2044939 RepID=A0A2V2FN29_9FIRM) HSP 1 Score: 68.9 bits (167), Expect = 1.120e-10 Identity = 43/152 (28.29%), Postives = 74/152 (48.68%), Query Frame = 1 Query: 19 IQGTLKRVEWRSP-TGVQILLVDGEDGEAFWAFAQEQRVYVGERVELSGSWNAAPPPGRVLHVSRLVSTPPKSAQGLTDYVSQAL--ACDTTIANAIVSQFGDLTVTVLDDKPERLVDVPGIGRAAVPEFADAWRRSRTHSQSQRVMERMGL 465 I+GT+K + +R+ G +L + G+ A VGER+E++G+W P GR + P + L +Y+ L + A IV+ FG T+ VL+++P+RL +VPGIGR + A+++ R ++ G+ Sbjct: 20 IKGTVKSIIFRNEENGYTVLELVDATGDEITAVGALPLASVGERIEITGTWTEHPTYGRQFRAQGCRTLAPATLSALVNYLGSGLIRGVGESTAREIVNTFGTDTLAVLENEPQRLTEVPGIGRLRAAKIAESFAAQRDMRDIMLALQEFGV 171
BLAST of mRNA_C-australica_Contig_10233.1.1 vs. uniprot
Match: A0A2E7UP43_9DELT (ATP-dependent RecD-like DNA helicase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E7UP43_9DELT) HSP 1 Score: 68.6 bits (166), Expect = 1.520e-10 Identity = 43/155 (27.74%), Postives = 69/155 (44.52%), Query Frame = 1 Query: 10 DKVIQGTLKRVEWRSPTG-VQILLVDGEDGEAFWAFAQEQRVYVGERVELSGSWNAAPPPGRVLHVSRLVSTPPKSAQGLTDYVSQALA--CDTTIANAIVSQFGDLTVTVLDDKPERLVDVPGIGRAAVPEFADAWRRSRTHSQSQRVMERMGL 465 + ++G L W S G I + G D A + G+ + L G W GR +V PKS GL Y+S T A +V FG+ T+ ++D++P+RL++V GIG+ V + W+ R H + V+ +G+ Sbjct: 4 ENTLEGELIGFRWVSDDGSFAIARLRGPDQREVVAVGPLGHIQPGQHMTLRGHWETRSMFGRQFRARSVVVEDPKSLLGLERYLSDGAVKGLGPTFARRVVDHFGNDTLRIIDEEPQRLMEVSGIGKKRVATITEHWQTGRIHRELHTVLRGLGI 158
BLAST of mRNA_C-australica_Contig_10233.1.1 vs. uniprot
Match: A0A7V4GHG1_9DELT (ATP-dependent RecD-like DNA helicase n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A7V4GHG1_9DELT) HSP 1 Score: 68.6 bits (166), Expect = 1.520e-10 Identity = 48/154 (31.17%), Postives = 74/154 (48.05%), Query Frame = 1 Query: 19 IQGTLKRVEWRSP-TGVQILLVDGEDG-EAFWAFAQEQRVYVGERVELSGSWNAAPPPGRVLHVSRLVSTPPKSAQGLTDYVSQAL--ACDTTIANAIVSQFGDLTVTVLDDKPERLVDVPGIGRAAVPEFADAWRRSRTHSQSQRVMERMGLN 468 I+GT++RV +RS +G +L V + G E VGE + L G W P G V S P + GL Y+ L +A IV+ FG+ T+ VL+++PERL +V G+G V +AWR R ++ ++ G++ Sbjct: 4 IRGTVERVTFRSEESGYAVLRVLPDGGSEPVTVVGNVGAAQVGEELSLRGRWVRNPRFGPQFEVETYRSVVPATLAGLQRYLGSGLIRGIGKELARRIVATFGEETLAVLEERPERLAEVEGLGPKRVERVREAWREQRVVKEAMIFLQSHGIS 157
BLAST of mRNA_C-australica_Contig_10233.1.1 vs. uniprot
Match: A0A840QEX7_9PSEU (ATP-dependent RecD-like DNA helicase n=4 Tax=Saccharopolyspora TaxID=1835 RepID=A0A840QEX7_9PSEU) HSP 1 Score: 68.6 bits (166), Expect = 1.520e-10 Identity = 42/154 (27.27%), Postives = 70/154 (45.45%), Query Frame = 1 Query: 16 VIQGTLKRVEWRSP-TGVQILLVDGEDGEAFWAFAQEQRVYVGERVELSGSWNAAPPPGRVLHVSRLVSTPPKSAQGLTDYVSQAL--ACDTTIANAIVSQFGDLTVTVLDDKPERLVDVPGIGRAAVPEFADAWRRSRTHSQSQRVMERMGLN 468 V++GTL+R+ + + TG + +D G GE + + G W A P GR HV + P + QG+ Y+ L +A IV FG + V++ PERL++VP +G ADAW + + ++ +G++ Sbjct: 12 VLEGTLERITFANEDTGYTVARIDAGRGNLVTVVGALLGAQPGEALRMRGRWGAHPQYGRQFHVDDYRTVLPATVQGIRRYLGSGLIKGIGPKLAEKIVDHFGTDALEVIEQTPERLIEVPKLGPKRTKLIADAWEEQKAIKEVMVFLQGVGVS 165
BLAST of mRNA_C-australica_Contig_10233.1.1 vs. uniprot
Match: A0A2E6ETA7_9RICK (ATP-dependent RecD-like DNA helicase n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2E6ETA7_9RICK) HSP 1 Score: 68.2 bits (165), Expect = 2.070e-10 Identity = 39/115 (33.91%), Postives = 62/115 (53.91%), Query Frame = 1 Query: 130 VYVGERVELSGSWNAAPPPGRVLHVSRLVSTPPKSAQGLTDYVS--QALACDTTIANAIVSQFGDLTVTVLDDKPERLVDVPGIGRAAVPEFADAWRRSRTHSQSQRVMERMGLN 468 V VG+R+ L G W P GR V + P++A+GL Y++ + +A IV+ FGD T+ VLD+ PERL++V GIG + ++WR R + ++ +GL+ Sbjct: 53 VEVGDRLRLQGHWVTDPRYGRQFAVESYLPVLPETAEGLERYLAGQRVQGIGRVVAKRIVAHFGDSTLKVLDEHPERLLEVEGIGPGRLGRVIESWRLHRGERDAVIFLQGLGLS 167 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10233.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10233.1.1 >prot_C-australica_Contig_10233.1.1 ID=prot_C-australica_Contig_10233.1.1|Name=mRNA_C-australica_Contig_10233.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=155bp MADKVIQGTLKRVEWRSPTGVQILLVDGEDGEAFWAFAQEQRVYVGERVEback to top mRNA from alignment at C-australica_Contig_10233:365..832+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10233.1.1 ID=mRNA_C-australica_Contig_10233.1.1|Name=mRNA_C-australica_Contig_10233.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=468bp|location=Sequence derived from alignment at C-australica_Contig_10233:365..832+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10233:365..832+ >mRNA_C-australica_Contig_10233.1.1 ID=mRNA_C-australica_Contig_10233.1.1|Name=mRNA_C-australica_Contig_10233.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=465bp|location=Sequence derived from alignment at C-australica_Contig_10233:365..832+ (Chrysoparadoxa australica CS_1217)back to top |