mRNA_C-australica_Contig_10229.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_C-australica_Contig_10229.1.1 vs. uniprot
Match: A0A222E6A8_9RHOB (Sugar ABC transporter ATPase n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E6A8_9RHOB)

HSP 1 Score: 355 bits (912), Expect = 2.930e-121
Identity = 181/183 (98.91%), Postives = 182/183 (99.45%), Query Frame = 1

Query:    1 LKEQMPDRTMIYVTHDQVEAMTLATRIVVLANKGIAQVGAPLELYERPNSEFVAQFIGSPAMNLLPGEVIATGARTTIKLEGGGTALSDYPTSGADMGLRVNVGVRPEDFVAAEGEAVFSGTVNIIEALGEVTLLYFEAQQGGDPVIAKLPGIHHEMRGKTVSLGAAPEKVHLFADGVSLLYR 549
            LKEQMPDRTMIYVTHDQVEAMTLATRIVVLANKGIAQVGAPLELYERPNSEFVAQFIGSPAMNLLPGEVIATG RTT+KLEGGGTALSDYPTSGADMGLRVNVGVRPEDFVAAEGEAVFSGTVNIIEALGEVTLLYFEAQQGGDPVIAKLPGIHHEMRGKTVSLGAAPEKVHLFADGVSLLYR
Sbjct:  180 LKEQMPDRTMIYVTHDQVEAMTLATRIVVLANKGIAQVGAPLELYERPNSEFVAQFIGSPAMNLLPGEVIATGPRTTVKLEGGGTALSDYPTSGADMGLRVNVGVRPEDFVAAEGEAVFSGTVNIIEALGEVTLLYFEAQQGGDPVIAKLPGIHHEMRGKTVSLGAAPEKVHLFADGVSLLYR 362

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BLAST of mRNA_C-australica_Contig_10229.1.1 vs. uniprot
Match: A0A0B3RR97_9RHOB (Sugar ABC transporter ATP-binding protein n=5 Tax=Mameliella TaxID=1434019 RepID=A0A0B3RR97_9RHOB)

HSP 1 Score: 303 bits (776), Expect = 1.300e-100
Identity = 151/183 (82.51%), Postives = 165/183 (90.16%), Query Frame = 1

Query:    1 LKEQMPDRTMIYVTHDQVEAMTLATRIVVLANKGIAQVGAPLELYERPNSEFVAQFIGSPAMNLLPGEVIATGARTTIKLEGGGTALSDYPTSGADMGLRVNVGVRPEDFVAAEGEAVFSGTVNIIEALGEVTLLYFEAQQGGDPVIAKLPGIHHEMRGKTVSLGAAPEKVHLFADGVSLLYR 549
            LKEQMPDRTMIYVTHDQVEAMTLA+RIVVLANKGIAQVG+PLELYERPNSEFVAQFIGSP+MNLLPGEV+ TG +T +KL+GGGTALSDYPT+ AD GLRVNVGVRPEDFV  E   ++SG V I EALGEVTLLYF+A+ GGDPVI KLPGIH EMRGK VSLGA P+KVHLFA+GVSLLYR
Sbjct:  180 LKEQMPDRTMIYVTHDQVEAMTLASRIVVLANKGIAQVGSPLELYERPNSEFVAQFIGSPSMNLLPGEVVETGTQTRVKLDGGGTALSDYPTTEADKGLRVNVGVRPEDFVPTEDTPIYSGKVEITEALGEVTLLYFQAEGGGDPVIGKLPGIHREMRGKQVSLGAEPDKVHLFAEGVSLLYR 362

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BLAST of mRNA_C-australica_Contig_10229.1.1 vs. uniprot
Match: UPI001C98C7BC (sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC n=2 Tax=Rhodobacterales TaxID=204455 RepID=UPI001C98C7BC)

HSP 1 Score: 301 bits (770), Expect = 1.060e-99
Identity = 150/183 (81.97%), Postives = 167/183 (91.26%), Query Frame = 1

Query:    1 LKEQMPDRTMIYVTHDQVEAMTLATRIVVLANKGIAQVGAPLELYERPNSEFVAQFIGSPAMNLLPGEVIATGARTTIKLEGGGTALSDYPTSGADMGLRVNVGVRPEDFVAAEGEAVFSGTVNIIEALGEVTLLYFEAQQGGDPVIAKLPGIHHEMRGKTVSLGAAPEKVHLFADGVSLLYR 549
            LKEQMPDRTMIYVTHDQVEAMTLA+RIVVLANKGIAQVG+PLELYERPNSEFVAQFIGSP+MNLLPGEV+ TG +TT+KL GGGTA+SDYPT+ ADMGL VNVG+RPEDFVAA+    FSG V+I+EALGEVTLLYF+  +G +PVIAKLPGIH +MRGKTV+L AAPEKVHLFA GVSLLYR
Sbjct:  180 LKEQMPDRTMIYVTHDQVEAMTLASRIVVLANKGIAQVGSPLELYERPNSEFVAQFIGSPSMNLLPGEVVGTGTQTTVKLAGGGTAVSDYPTTDADMGLAVNVGIRPEDFVAADSGEAFSGMVDIVEALGEVTLLYFKHAEGVEPVIAKLPGIHEDMRGKTVALTAAPEKVHLFAGGVSLLYR 362

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BLAST of mRNA_C-australica_Contig_10229.1.1 vs. uniprot
Match: A0A238K210_9RHOB (Maltose/maltodextrin import ATP-binding protein MalK n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238K210_9RHOB)

HSP 1 Score: 299 bits (765), Expect = 6.050e-99
Identity = 150/183 (81.97%), Postives = 163/183 (89.07%), Query Frame = 1

Query:    1 LKEQMPDRTMIYVTHDQVEAMTLATRIVVLANKGIAQVGAPLELYERPNSEFVAQFIGSPAMNLLPGEVIATGARTTIKLEGGGTALSDYPTSGADMGLRVNVGVRPEDFVAAEGEAVFSGTVNIIEALGEVTLLYFEAQQGGDPVIAKLPGIHHEMRGKTVSLGAAPEKVHLFADGVSLLYR 549
            LKE MPDRTMIYVTHDQVEAMTLATRIVVLANKGIAQVG+PLELYERPNSEFVAQFIGSPAMNLLPGEV+ TG RTT+++EGGG A+S YPT+ AD GLRVNVGVRPEDF+A EGEA+++G V I EALGEVTLLYF  +     V AKLPGIH EMRG+TVSLGAAPEKVHLFADGVSLLYR
Sbjct:  180 LKESMPDRTMIYVTHDQVEAMTLATRIVVLANKGIAQVGSPLELYERPNSEFVAQFIGSPAMNLLPGEVVETGERTTVRMEGGGIAVSQYPTTAADKGLRVNVGVRPEDFLATEGEAIYTGKVGITEALGEVTLLYFGGEGATAQVTAKLPGIHREMRGRTVSLGAAPEKVHLFADGVSLLYR 362

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BLAST of mRNA_C-australica_Contig_10229.1.1 vs. uniprot
Match: A0A0W7WMZ2_9RHOB (ABC transporter ATP-binding protein n=1 Tax=Ponticoccus marisrubri TaxID=1685382 RepID=A0A0W7WMZ2_9RHOB)

HSP 1 Score: 296 bits (759), Expect = 4.920e-98
Identity = 146/183 (79.78%), Postives = 164/183 (89.62%), Query Frame = 1

Query:    1 LKEQMPDRTMIYVTHDQVEAMTLATRIVVLANKGIAQVGAPLELYERPNSEFVAQFIGSPAMNLLPGEVIATGARTTIKLEGGGTALSDYPTSGADMGLRVNVGVRPEDFVAAEGEAVFSGTVNIIEALGEVTLLYFEAQQGGDPVIAKLPGIHHEMRGKTVSLGAAPEKVHLFADGVSLLYR 549
            LKEQMPDRTMIYVTHDQVEAMTLA+RIVVLANKGIAQVG+PLELYERPNSEFVAQFIGSP+MNLLPGE++ATGA+TT+KLEGGGTA+SDYP+   DMG +VNVGVRPEDF A EG A++ G V+I EALGEVTLLYFE   G DPVIAKLPGIH EMRG+ V+L A+ +KVHLFADG S+LYR
Sbjct:  180 LKEQMPDRTMIYVTHDQVEAMTLASRIVVLANKGIAQVGSPLELYERPNSEFVAQFIGSPSMNLLPGEIVATGAQTTVKLEGGGTAVSDYPSEAGDMGRKVNVGVRPEDFTATEGAALYKGRVDITEALGEVTLLYFEKTGGADPVIAKLPGIHREMRGRDVALTASSDKVHLFADGTSMLYR 362

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BLAST of mRNA_C-australica_Contig_10229.1.1 vs. uniprot
Match: A3JYR9_9RHOB (ABC transporter related protein n=2 Tax=Sagittula TaxID=58842 RepID=A3JYR9_9RHOB)

HSP 1 Score: 293 bits (749), Expect = 1.610e-96
Identity = 149/183 (81.42%), Postives = 161/183 (87.98%), Query Frame = 1

Query:    1 LKEQMPDRTMIYVTHDQVEAMTLATRIVVLANKGIAQVGAPLELYERPNSEFVAQFIGSPAMNLLPGEVIATGARTTIKLEGGGTALSDYPTSGADMGLRVNVGVRPEDFVAAEGEAVFSGTVNIIEALGEVTLLYFEAQQGGDPVIAKLPGIHHEMRGKTVSLGAAPEKVHLFADGVSLLYR 549
            LKE MPDRTMIYVTHDQVEAMTLA+RIVVLANKGIAQVG PLELYERPN EFVAQFIGSP+MNLLPGEVIATGA+TT++L GGGTA+S+ PT  ADMGL+V VG+RPEDF    GEAVFSG V I EALGEVTLLYF A++G DPVIAKLPGIH  MRG+TV L A PEKVHLFADGVSLLYR
Sbjct:  180 LKESMPDRTMIYVTHDQVEAMTLASRIVVLANKGIAQVGTPLELYERPNGEFVAQFIGSPSMNLLPGEVIATGAQTTVRLAGGGTAVSNVPTKDADMGLKVKVGIRPEDFTQTTGEAVFSGEVAITEALGEVTLLYFVAEKGEDPVIAKLPGIHTGMRGQTVPLTAVPEKVHLFADGVSLLYR 362

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BLAST of mRNA_C-australica_Contig_10229.1.1 vs. uniprot
Match: UPI000EF5537B (sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC n=1 Tax=Tropicibacter sp. LMIT003 TaxID=2267683 RepID=UPI000EF5537B)

HSP 1 Score: 293 bits (749), Expect = 1.610e-96
Identity = 146/183 (79.78%), Postives = 160/183 (87.43%), Query Frame = 1

Query:    1 LKEQMPDRTMIYVTHDQVEAMTLATRIVVLANKGIAQVGAPLELYERPNSEFVAQFIGSPAMNLLPGEVIATGARTTIKLEGGGTALSDYPTSGADMGLRVNVGVRPEDFVAAEGEAVFSGTVNIIEALGEVTLLYFEAQQGGDPVIAKLPGIHHEMRGKTVSLGAAPEKVHLFADGVSLLYR 549
            LKEQMPDRTMIYVTHDQVEAMTLATRIVVLANKGIAQVG PL+LYERPNSEFVAQFIGSP+MNLLPGEVI TGA+T +KL GGG ALSDYPT+ ADMGL+V VG+RPEDFV  +G+  + GTV+I EALGEVTLLYF+     +PVIAKLPGIH EMRGKTV+L A P KVHLFADGVSL YR
Sbjct:  180 LKEQMPDRTMIYVTHDQVEAMTLATRIVVLANKGIAQVGTPLDLYERPNSEFVAQFIGSPSMNLLPGEVIGTGAQTRVKLAGGGEALSDYPTTDADMGLKVKVGIRPEDFVMTDGQGSYQGTVDITEALGEVTLLYFQTDGSAEPVIAKLPGIHREMRGKTVALSADPSKVHLFADGVSLHYR 362

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BLAST of mRNA_C-australica_Contig_10229.1.1 vs. uniprot
Match: A0A1M5QI03_9RHOB (Maltose ABC transporter ATP-binding protein /trehalose ABC transporter ATP-binding protein /sucrose ABC transporter ATP-binding protein n=6 Tax=Marivita TaxID=659428 RepID=A0A1M5QI03_9RHOB)

HSP 1 Score: 291 bits (744), Expect = 9.230e-96
Identity = 143/183 (78.14%), Postives = 163/183 (89.07%), Query Frame = 1

Query:    1 LKEQMPDRTMIYVTHDQVEAMTLATRIVVLANKGIAQVGAPLELYERPNSEFVAQFIGSPAMNLLPGEVIATGARTTIKLEGGGTALSDYPTSGADMGLRVNVGVRPEDFVAAEGEAVFSGTVNIIEALGEVTLLYFEAQQGGDPVIAKLPGIHHEMRGKTVSLGAAPEKVHLFADGVSLLYR 549
            LKEQMP+ TMIYVTHDQVEAMTLA+RIVVLANKGIAQVGAPLELYERPNSEFVAQFIGSP+MNLLPGE++ TG +TTIK++ GGTA+SDYPT+ ADMGL+VNVGVRPEDF+  +GE +F G VNI EALGEVTLLYFE Q  GD VI KLPGIH E+RGK+V LGA+P+KVH+F +G SLLYR
Sbjct:  180 LKEQMPESTMIYVTHDQVEAMTLASRIVVLANKGIAQVGAPLELYERPNSEFVAQFIGSPSMNLLPGEIVGTGQQTTIKMDRGGTAVSDYPTTDADMGLKVNVGVRPEDFLETDGEHIFEGKVNITEALGEVTLLYFEKQGDGDAVIGKLPGIHAELRGKSVKLGASPDKVHVFHNGTSLLYR 362

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BLAST of mRNA_C-australica_Contig_10229.1.1 vs. uniprot
Match: A0A0P1G615_9RHOB (Maltose/maltodextrin import ATP-binding protein MalK n=1 Tax=Tropicibacter naphthalenivorans TaxID=441103 RepID=A0A0P1G615_9RHOB)

HSP 1 Score: 290 bits (743), Expect = 1.310e-95
Identity = 144/183 (78.69%), Postives = 163/183 (89.07%), Query Frame = 1

Query:    1 LKEQMPDRTMIYVTHDQVEAMTLATRIVVLANKGIAQVGAPLELYERPNSEFVAQFIGSPAMNLLPGEVIATGARTTIKLEGGGTALSDYPTSGADMGLRVNVGVRPEDFVAAEGEAVFSGTVNIIEALGEVTLLYFEAQQGGDPVIAKLPGIHHEMRGKTVSLGAAPEKVHLFADGVSLLYR 549
            LKEQMPDRTMIYVTHDQVEAMTLA+RIVVLANKGIAQVG PLELYERPNSEFVAQFIGSP+MNLLPGEVIATGA+TT++L GGG A+SDYPT+ AD+GL+VNVG+RPEDF+  + +  F+GTV+IIEALGEVTLLYFE    G  V+AKLPGIH +MRGK+V L A P+KVHLFADGVSL YR
Sbjct:  180 LKEQMPDRTMIYVTHDQVEAMTLASRIVVLANKGIAQVGTPLELYERPNSEFVAQFIGSPSMNLLPGEVIATGAQTTVQLAGGGRAVSDYPTTEADLGLKVNVGIRPEDFIPTDADPAFTGTVDIIEALGEVTLLYFERGDHGAAVVAKLPGIHQDMRGKSVQLTAMPDKVHLFADGVSLRYR 362

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BLAST of mRNA_C-australica_Contig_10229.1.1 vs. uniprot
Match: A0A238KYI1_9RHOB (Maltose/maltodextrin import ATP-binding protein MalK n=1 Tax=Pelagimonas varians TaxID=696760 RepID=A0A238KYI1_9RHOB)

HSP 1 Score: 287 bits (734), Expect = 3.030e-94
Identity = 144/183 (78.69%), Postives = 160/183 (87.43%), Query Frame = 1

Query:    1 LKEQMPDRTMIYVTHDQVEAMTLATRIVVLANKGIAQVGAPLELYERPNSEFVAQFIGSPAMNLLPGEVIATGARTTIKLEGGGTALSDYPTSGADMGLRVNVGVRPEDFVAAEGEAVFSGTVNIIEALGEVTLLYFEAQQGGDPVIAKLPGIHHEMRGKTVSLGAAPEKVHLFADGVSLLYR 549
            LKEQMPDRTMIYVTHDQVEAMTLATRIVVLANKGIAQVG+PLELYERPNSEFVAQFIGSPAMNL+PGEV+ TG +T +KLEGGG  LSDYPT+ ADMGL+VNVGVRPEDFV AE + +F+G V+I EALGEVTLLYF + +G   VIAKLPGIH EMRG+ V+L   P+KVHLFA G SLLYR
Sbjct:  180 LKEQMPDRTMIYVTHDQVEAMTLATRIVVLANKGIAQVGSPLELYERPNSEFVAQFIGSPAMNLIPGEVVGTGTQTRVKLEGGGETLSDYPTTDADMGLKVNVGVRPEDFVMAEDQMIFTGKVSITEALGEVTLLYFGSPEGEHSVIAKLPGIHLEMRGREVALTTTPDKVHLFAAGTSLLYR 362

The following BLAST results are available for this feature:

BLAST of mRNA_C-australica_Contig_10229.1.1 vs. uniprot

BLAST of mRNA_C-australica_Contig_10229.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

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POSITION

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Match Name	E-value	Identity	Description
A0A222E6A8_9RHOB	2.930e-121	98.91	Sugar ABC transporter ATPase n=3 Tax=Roseobacterac...	[more]
A0A0B3RR97_9RHOB	1.300e-100	82.51	Sugar ABC transporter ATP-binding protein n=5 Tax=...	[more]
UPI001C98C7BC	1.060e-99	81.97	sn-glycerol-3-phosphate ABC transporter ATP-bindin...	[more]
A0A238K210_9RHOB	6.050e-99	81.97	Maltose/maltodextrin import ATP-binding protein Ma...	[more]
A0A0W7WMZ2_9RHOB	4.920e-98	79.78	ABC transporter ATP-binding protein n=1 Tax=Pontic...	[more]
A3JYR9_9RHOB	1.610e-96	81.42	ABC transporter related protein n=2 Tax=Sagittula ...	[more]
UPI000EF5537B	1.610e-96	79.78	sn-glycerol-3-phosphate ABC transporter ATP-bindin...	[more]
A0A1M5QI03_9RHOB	9.230e-96	78.14	Maltose ABC transporter ATP-binding protein /treha...	[more]
A0A0P1G615_9RHOB	1.310e-95	78.69	Maltose/maltodextrin import ATP-binding protein Ma...	[more]
A0A238KYI1_9RHOB	3.030e-94	78.69	Maltose/maltodextrin import ATP-binding protein Ma...	[more]

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Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-australica_Contig_10229:281..832-
coding sequence from alignment at C-australica_Contig_10229:281..832-

protein sequence of mRNA_C-australica_Contig_10229.1.1

>prot_C-australica_Contig_10229.1.1 ID=prot_C-australica_Contig_10229.1.1|Name=mRNA_C-australica_Contig_10229.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=180bp
MPDRTMIYVTHDQVEAMTLATRIVVLANKGIAQVGAPLELYERPNSEFVA
QFIGSPAMNLLPGEVIATGARTTIKLEGGGTALSDYPTSGADMGLRVNVG
VRPEDFVAAEGEAVFSGTVNIIEALGEVTLLYFEAQQGGDPVIAKLPGIH
HEMRGKTVSLGAAPEKVHLFADGVSLLYR*

mRNA from alignment at C-australica_Contig_10229:281..832-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-australica_Contig_10229.1.1 ID=mRNA_C-australica_Contig_10229.1.1|Name=mRNA_C-australica_Contig_10229.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=552bp|location=Sequence derived from alignment at C-australica_Contig_10229:281..832- (Chrysoparadoxa australica CS_1217)
CTGAAGGAGCAGATGCCAGACCGGACCATGATTTATGTCACCCATGATCA
GGTCGAGGCGATGACGTTGGCGACCCGCATCGTGGTGCTGGCGAACAAGG
GGATCGCGCAGGTGGGCGCGCCGCTGGAACTGTACGAGCGGCCCAACAGC
GAATTTGTGGCGCAGTTCATCGGCTCTCCGGCGATGAACCTGCTGCCGGG
CGAGGTGATCGCCACGGGGGCGCGGACGACCATCAAACTGGAGGGGGGTG
GCACGGCCTTGTCCGACTATCCGACCAGCGGGGCGGACATGGGATTGAGG
GTCAACGTGGGCGTCCGGCCAGAGGATTTTGTCGCCGCCGAGGGGGAGGC
GGTGTTCTCCGGCACGGTCAATATTATCGAGGCTTTGGGAGAGGTCACGC
TGCTGTATTTCGAGGCCCAGCAGGGAGGCGATCCGGTGATCGCCAAGCTG
CCCGGCATTCACCATGAAATGCGGGGCAAGACGGTCTCTTTGGGGGCCGC
GCCGGAGAAGGTGCATCTGTTCGCCGATGGGGTGTCGCTGTTGTATCGGT
GA

Coding sequence (CDS) from alignment at C-australica_Contig_10229:281..832-

>mRNA_C-australica_Contig_10229.1.1 ID=mRNA_C-australica_Contig_10229.1.1|Name=mRNA_C-australica_Contig_10229.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=540bp|location=Sequence derived from alignment at C-australica_Contig_10229:281..832- (Chrysoparadoxa australica CS_1217)
ATGCCAGACCGGACCATGATTTATGTCACCCATGATCAGGTCGAGGCGAT
GACGTTGGCGACCCGCATCGTGGTGCTGGCGAACAAGGGGATCGCGCAGG
TGGGCGCGCCGCTGGAACTGTACGAGCGGCCCAACAGCGAATTTGTGGCG
CAGTTCATCGGCTCTCCGGCGATGAACCTGCTGCCGGGCGAGGTGATCGC
CACGGGGGCGCGGACGACCATCAAACTGGAGGGGGGTGGCACGGCCTTGT
CCGACTATCCGACCAGCGGGGCGGACATGGGATTGAGGGTCAACGTGGGC
GTCCGGCCAGAGGATTTTGTCGCCGCCGAGGGGGAGGCGGTGTTCTCCGG
CACGGTCAATATTATCGAGGCTTTGGGAGAGGTCACGCTGCTGTATTTCG
AGGCCCAGCAGGGAGGCGATCCGGTGATCGCCAAGCTGCCCGGCATTCAC
CATGAAATGCGGGGCAAGACGGTCTCTTTGGGGGCCGCGCCGGAGAAGGT
GCATCTGTTCGCCGATGGGGTGTCGCTGTTGTATCGGTGA