mRNA_C-australica_Contig_1022.13.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1022.13.1 vs. uniprot
Match: D8LC27_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC27_ECTSI) HSP 1 Score: 102 bits (254), Expect = 1.770e-21 Identity = 76/169 (44.97%), Postives = 95/169 (56.21%), Query Frame = 1 Query: 211 VDYEALKASAGVSEKGGEISMSVEETNKIRAELGLKPLNLG------PSKDDKAVENMRLKKEAEDAQLAAREVEKRLDKARRKRLLNEKLQGETLGQPAEGGG---SAADWVKKSXXXXXXXXXXXXXXXXXXXXXAEQ---------DDAG---TAYGADDLTGLKV 654 VD E +K + E GEISMSVEETN++RA LGLKPLN+G P++++ AVENMRLK+E E+ +E+E RL KAR KR LNEKL+G+TLG+ G SAADWV +S EQ D G AYGA++L GLKV Sbjct: 120 VDVEKIKPNT--EENKGEISMSVEETNRVRAMLGLKPLNVGGSASGKPTEEEIAVENMRLKREEEEQARELKELETRLQKARTKRQLNEKLKGDTLGEVKPGDEEVVSAADWVNRSRKKAVAMEEERLLARQRERILEEQEMELANGGGDGDGRRKAAYGAENLAGLKV 286
BLAST of mRNA_C-australica_Contig_1022.13.1 vs. uniprot
Match: A0A836C9M6_9STRA (SART-1 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9M6_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 3.140e-19 Identity = 61/113 (53.98%), Postives = 79/113 (69.91%), Query Frame = 1 Query: 205 GEVDYEALKASAGVSEKGGEISMSVEETNKIRAELGLKPLNLGPSKDDKAVENMRLKKEAEDAQLAAREVEKRLDKARRKRLLNEKLQGETLG--QPAEGGG--SAADWVKKS 531 G+V YE +K + VSE GEISMS+EETN++RA LGL+PL +G SK+ +AV+N+R KKE E ++E RL KAR +R L+E+L+G TLG Q E G SAADWV KS Sbjct: 73 GDVVYEKIKPA--VSESNGEISMSIEETNRVRAMLGLRPLAVGNSKEQQAVDNLRRKKEEEAKVRELADIEARLAKARNRRQLHERLKGSTLGEVQAGEDGSVLSAADWVGKS 183
BLAST of mRNA_C-australica_Contig_1022.13.1 vs. uniprot
Match: A0A7S3URM7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URM7_HETAK) HSP 1 Score: 88.6 bits (218), Expect = 1.320e-17 Identity = 55/99 (55.56%), Postives = 69/99 (69.70%), Query Frame = 1 Query: 256 GGEISMSVEETNKIRAELGLKPLNLGP----SKDDKAVENMRLKKEAEDAQLAAREVEKRLDKARRKRLLNEKLQGETLGQPAEGG---GSAADWVKKS 531 G E+S S+EETN+IRA LGLKPL L S + AV+NMR KKE E Q E+E R+ +AR+KR LNEKL+G+ LG+ AEG GSAADWV++S Sbjct: 1 GEEVSCSIEETNRIRAALGLKPLKLEKGDEQSAEQIAVDNMRKKKEEEGRQRELAEIEARIARARKKRALNEKLEGKRLGELAEGEQEIGSAADWVRRS 99
BLAST of mRNA_C-australica_Contig_1022.13.1 vs. uniprot
Match: K3X7K2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7K2_GLOUD) HSP 1 Score: 85.9 bits (211), Expect = 7.150e-16 Identity = 47/100 (47.00%), Postives = 69/100 (69.00%), Query Frame = 1 Query: 238 AGVSEKGGEISMSVEETNKIRAELGLKPLNLGPSKDDKAVENMRLKKEAEDAQLAAREVEKRLDKARRKRLLNEKLQGETLGQP--AEGGGSAADWVKKS 531 A EK GEISMS+EETN++RA LGLKPL+LGP K D V N++ E D + A +++K++ ++++KR L +KL G+++G+ A SA DWVK+S Sbjct: 101 ANTVEKNGEISMSIEETNRVRAALGLKPLSLGPKKKDANVVNLQKTSEQVDEERAREDLQKKIAQSKKKRELTQKLAGQSIGEQLKASASSSALDWVKQS 200
BLAST of mRNA_C-australica_Contig_1022.13.1 vs. uniprot
Match: A0A833WBH8_PHYIN (SART-1 family n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WBH8_PHYIN) HSP 1 Score: 76.3 bits (186), Expect = 1.740e-12 Identity = 42/105 (40.00%), Postives = 70/105 (66.67%), Query Frame = 1 Query: 238 AGVSEKGGEISMSVEETNKIRAELGLKPLNLGPSKDDKAVENMRLKKEAEDAQLAAREVEKRLDKARRKRLLNEKLQGETLGQPAEG-------GGSAADWVKKS 531 A +K GEIS+S+EETNK+R LGLKPL++GPSK +++V N++ DA+ +E++K+L +++ +R L +K+ G++LG+ + G A +WVK+S Sbjct: 22 ASSEDKSGEISLSIEETNKLRISLGLKPLSVGPSKKEQSVVNVQKTSAQLDAERKQQELKKKLQQSKTRRELTQKIAGKSLGEQLKADLEAQKKGNDALEWVKQS 126
BLAST of mRNA_C-australica_Contig_1022.13.1 vs. uniprot
Match: A0A8K1CWD9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CWD9_PYTOL) HSP 1 Score: 76.3 bits (186), Expect = 1.770e-12 Identity = 62/138 (44.93%), Postives = 88/138 (63.77%), Query Frame = 1 Query: 247 SEKGGEISMSVEETNKIRAELGLKPLNLGPSKDDKAVENMRLKKEAEDAQLAAREVEKRLDKARRKRLLNEKLQGETLGQPAE--GGGSAADWVKKSXXXXXXXXXXXXXXXXXXXXXAEQDDAGTAYGADDLTGLKV 654 +E+ GEISMS+EETNK+R LGLKPL++GP K+ V N++ E + E++K L+++RRKR L +KL G+++GQ + SA DWVK+S XXXXXXXXXX +++ GT+Y A L G+ V Sbjct: 85 TEENGEISMSIEETNKLRISLGLKPLSVGPKKEKNLV-NLQKTSEQLAEEKERDEIKKALEQSRRKRELTQKLAGKSIGQELKESAASSALDWVKQSRQSAAQXXXXXXXXXXK-----QKEAEGTSYDASALAGMTV 216
BLAST of mRNA_C-australica_Contig_1022.13.1 vs. uniprot
Match: A0A7S1XUI2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUI2_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 1.120e-11 Identity = 57/141 (40.43%), Postives = 74/141 (52.48%), Query Frame = 1 Query: 238 AGVSEKGGEISMSVEETNKIRAELGLKPLNLGP--SKDDKAVENMRLKKEAEDAQLAAREVEKRLDKARRKRLLNEKLQGETLGQPAEGGGSAADWVKKSXXXXXXXXXXXXXXXXXXXXXAEQDDAGTAYGADDLTGLKV 654 A V+EKGGEIS SVEETN++RA LGLKPL G SKD+ AVEN + KE E A+ A+E R N K++G TLG +G S A WV++S A + + G Y + DL G++V Sbjct: 12 AQVTEKGGEISASVEETNRVRALLGLKPLRTGKEKSKDEIAVENFKRVKEEEAAKKRAQEAXXXXXXXXXXRERNAKIEGPTLGDGDDGVSSVA-WVQRSRAKAKEQEARKKEALER----AAKGEVGADYTSSDLVGMEV 147
BLAST of mRNA_C-australica_Contig_1022.13.1 vs. uniprot
Match: A0A7S1CFK3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CFK3_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 2.690e-11 Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 1 Query: 238 AGVSEKGGEISMSVEETNKIRAELGLKPL------NLGPSKDDKAVENMRLKKEAEDAQLAAREVEKRLDKARRKRLLNEKLQGETLGQPAEGG 501 A VSE GGE+S S+ ETN+IRA LGLKPL + PSK+++AVE + + E ++E RL +AR+KR LN KLQG++LG+ GG Sbjct: 128 AQVSEGGGEVSCSIAETNRIRAALGLKPLEGVGGASAQPSKEERAVEEHKTQIEERRRAEERADIEARLARARKKRELNAKLQGQSLGEMLAGG 221
BLAST of mRNA_C-australica_Contig_1022.13.1 vs. uniprot
Match: A0A329SND0_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SND0_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 3.660e-11 Identity = 41/101 (40.59%), Postives = 68/101 (67.33%), Query Frame = 1 Query: 250 EKGGEISMSVEETNKIRAELGLKPLNLGPSKDDKAVENMRLKKEAEDAQLAAREVEKRLDKARRKRLLNEKLQGETLGQPAEG-------GGSAADWVKKS 531 +K GEIS+S+EETNK+R LGLKPL++GPSK ++AV +++ DA+ + ++K+L +++ +R L +KL G++LG+ + G A +WVK+S Sbjct: 51 DKSGEISLSIEETNKLRISLGLKPLSVGPSKKEQAVVSVQKTSAQLDAEREQQALKKKLQQSKTRRELTQKLAGKSLGEQLKADLEAEKKGHDALEWVKQS 151
BLAST of mRNA_C-australica_Contig_1022.13.1 vs. uniprot
Match: A0A7S1E0I7_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1E0I7_HEMAN) HSP 1 Score: 70.1 bits (170), Expect = 1.320e-10 Identity = 44/103 (42.72%), Postives = 67/103 (65.05%), Query Frame = 1 Query: 244 VSEKGGEISMSVEETNKIRAELGLKPLNLGPSKD------DKAVENMRLKKEAEDAQLAAREVEKRLDKARRKRLLNEK-LQGETLGQPAEGGGSAADWVKKS 531 V++ GGEISMS+EETNK+RA LGLKPL+L PSK D ++ +R K EA DA+ A + K++ +++RL +K + +TLG+ ++ A+WV K+ Sbjct: 10 VTDSGGEISMSIEETNKVRASLGLKPLDLAPSKPLKEGSKDAPIDAVREKAEA-DAEKEAEAMRKKIADMKKQRLSQKKVMSAKTLGEGSDDDDDVANWVSKA 111 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1022.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1022.13.1 >prot_C-australica_Contig_1022.13.1 ID=prot_C-australica_Contig_1022.13.1|Name=mRNA_C-australica_Contig_1022.13.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=218bp RSRSNDRSRRGKRSRSRSRGRERSRSRSRSRSRGRDRGRDRGRSRDRSYDback to top mRNA from alignment at C-australica_Contig_1022:15597..16685+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1022.13.1 ID=mRNA_C-australica_Contig_1022.13.1|Name=mRNA_C-australica_Contig_1022.13.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1089bp|location=Sequence derived from alignment at C-australica_Contig_1022:15597..16685+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1022:15597..16685+ >mRNA_C-australica_Contig_1022.13.1 ID=mRNA_C-australica_Contig_1022.13.1|Name=mRNA_C-australica_Contig_1022.13.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=654bp|location=Sequence derived from alignment at C-australica_Contig_1022:15597..16685+ (Chrysoparadoxa australica CS_1217)back to top |