mRNA_C-australica_Contig_1021.6.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1021.6.1
Unique NamemRNA_C-australica_Contig_1021.6.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_1021.6.1 vs. uniprot
Match: A0A6U1AP86_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AP86_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.310e-34
Identity = 66/127 (51.97%), Postives = 85/127 (66.93%), Query Frame = 1
Query:    4 KFREAFKDEEFRKMFGEYMQEISDPKYRKEQEAYITQLEGENRVPQGKQLVRPSKGMVVKTSYCGENSGSKEKMFINIVVSEKIAPPKFQKESGGMTMTLPTASGGMHLEKDSKGQDTTTFDVCVHP 384
            KFR AF D +FR+M  +YM EISDPK+R EQEAYIT+LE E++VP+GK+LVRPS   VVKT     +     K+FIN+V S+KIA PK   + GG++ +LP + G   +E D  G    TFD C HP
Sbjct:   47 KFRNAFGDPKFREMLADYMDEISDPKHRAEQEAYITKLENEDQVPEGKELVRPSAAFVVKTHTEDADKAKGSKVFINVVQSDKIAEPKATPQKGGVSYSLPLSLGPKRMESDKGGATVPTFDACFHP 173          
BLAST of mRNA_C-australica_Contig_1021.6.1 vs. uniprot
Match: D7FKK0_ECTSI (PIH1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK0_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.530e-30
Identity = 63/132 (47.73%), Postives = 84/132 (63.64%), Query Frame = 1
Query:    4 KFREAFKDEEFRKMFGEYMQEISDPKYRKEQEAYITQLEGENRVPQGKQLVRPSKGMVVKTSYC-GENSGSKEKMFINIVVSEKIAPPKFQKES----GGMTMTLPTASGGMHLEKDSKGQDTTTFDVCVHP 384
            KF+ A  + EF+ M  +YM+E+ DPK R EQE YI++LE +NRVP+GK++V P  G V+KT +  G      EK+F N+V S+K+A P + K S    GG   +LP A G +  EKD  G  TTTFDVC HP
Sbjct:   32 KFKTALGEPEFQAMLRDYMEEMQDPKQRAEQELYISELESQNRVPEGKEVVHPLPGFVIKTRFTRGSKDAEPEKLFTNVVTSDKLAKP-YSKISNSRPGGEAWSLPVAVGPLRKEKDKGGGSTTTFDVCYHP 162          
BLAST of mRNA_C-australica_Contig_1021.6.1 vs. uniprot
Match: F0YEB3_AURAN (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEB3_AURAN)

HSP 1 Score: 117 bits (292), Expect = 7.030e-28
Identity = 60/127 (47.24%), Postives = 77/127 (60.63%), Query Frame = 1
Query:    4 KFREAFKDEEFRKMFGEYMQEISDPKYRKEQEAYITQLEGENRVPQGKQLVRPSKGMVVKTSYCGENSGSKEKMFINIVVSEKIAPPKFQKESGGMTMTLPTASGGMHLEKDSKGQDTTTFDVCVHP 384
            KF++AF D EFRKM  EY+ EISDPKYR+EQ  YI ++E +   P+GK L+ P  G VVKT   G+   +  K+FINIV SEK+  P+     GG    LP   G   +E+D K    +TFD C HP
Sbjct: 1309 KFKKAFGDPEFRKMMAEYVDEISDPKYREEQNQYIREMEAKGETPKGKALIHPKAGFVVKTRKMGKADHTGAKVFINIVSSEKLQEPEATPCDGGSRWALPHLLGPPRMERDKKDATVSTFDCCFHP 1435          
BLAST of mRNA_C-australica_Contig_1021.6.1 vs. uniprot
Match: A0A7S1XY41_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XY41_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.980e-27
Identity = 59/131 (45.04%), Postives = 80/131 (61.07%), Query Frame = 1
Query:    1 RKFREAFKDEEFRKMFGEYMQEISDPKYRKEQEAYITQLEGENRVPQGKQLVRPSKGMVVKTSYCGENSGS---KEKMFINIVVSEKIAPPKFQKESGGMTMTLPTASGGMHLEKDSKGQDTTTFDVCVHP 384
            +KF+ AF + EFRK+  EYM EISDP +R EQEAYI QLE +N+VP  K+L+ P  G VVKT   G  + +   +EK+FINIV  E++  P   +   G    LP + G   +E+D +G    T D+C HP
Sbjct:   45 KKFQAAFDEPEFRKLLSEYMDEISDPAHRAEQEAYIRQLEADNKVPTNKELIHPMPGFVVKTHRSGGGAPAEIDREKIFINIVGHERMEEPTSMRTDQGENWRLPYSLGPRRVEQDKRGGVVPTQDICFHP 175          
BLAST of mRNA_C-australica_Contig_1021.6.1 vs. uniprot
Match: A0A6G0WI70_9STRA (Protein kintoun n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WI70_9STRA)

HSP 1 Score: 114 bits (286), Expect = 4.250e-27
Identity = 64/132 (48.48%), Postives = 79/132 (59.85%), Query Frame = 1
Query:    7 FREAFKDEEFRKMFGEYMQEISDPKYRKEQEAYITQLEGENRVPQGKQLVRPSKGMVVKTSYCGENSGSKEKMFINIVVSEKIAPPKFQK------ESGGMTMTLPTASGGMHLEKDSKGQDTTTFDVCVHP 384
            F +A KD EFR +  EYMQEISDP++R EQE Y+ QLE EN+VP  KQLV P  G VVKT Y       ++KMFINI  S+K+ PP   +       + G +  LP   G   +E+D  GQ   TFDVC HP
Sbjct:   34 FLKAMKDPEFRSLLNEYMQEISDPQHRAEQEMYLRQLENENKVPTDKQLVLPKPGFVVKTKY------KQKKMFINICSSDKMQPPSSTRIAATTSTAAGTSWNLPYCVGPQRMEQDKGGQAVMTFDVCHHP 159          
BLAST of mRNA_C-australica_Contig_1021.6.1 vs. uniprot
Match: K0SV46_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SV46_THAOC)

HSP 1 Score: 112 bits (279), Expect = 5.940e-27
Identity = 54/126 (42.86%), Postives = 83/126 (65.87%), Query Frame = 1
Query:   16 AFKDEEFRKMFGEYMQEISDPKYRKEQEAYITQLEGENRVPQGKQLVRPSKGMVVKTSYCGENSGSKE---KMFINIVVSEKIAPPKFQKESGGMTMTLPTASGGMHLEKDSKGQDTTTFDVCVHP 384
            AF D +FR++  EY++E+SDP  R+EQEAY++QLE +N  P GK+L+RP+KG V+K  +            K+F+N+V SE++A P   +  GG + +LP A G + +E+D++G+   TFD C HP
Sbjct:   23 AFGDRDFRELLKEYVKELSDPASRREQEAYLSQLESQNETPGGKKLIRPAKGFVLKCLHRKRRDSPATRPAKLFVNVVHSEEVAAPSASERDGGTSWSLPHALGPLRMEQDNRGRLVPTFDCCFHP 148          
BLAST of mRNA_C-australica_Contig_1021.6.1 vs. uniprot
Match: A0A024TPK8_9STRA (Protein kintoun n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TPK8_9STRA)

HSP 1 Score: 111 bits (278), Expect = 5.000e-26
Identity = 60/132 (45.45%), Postives = 77/132 (58.33%), Query Frame = 1
Query:    7 FREAFKDEEFRKMFGEYMQEISDPKYRKEQEAYITQLEGENRVPQGKQLVRPSKGMVVKTSYCGENSGSKEKMFINIVVSEKIAPPKFQK------ESGGMTMTLPTASGGMHLEKDSKGQDTTTFDVCVHP 384
            F +A KD EFR +  +YMQEISDP +R EQE Y+ QLE +N+VP  KQLV P  G VVKT Y       + K+F+N+  SEK+ PP   +       +GG +  LP   G   +E D  GQ   T+DVC HP
Sbjct:   37 FLKAMKDPEFRTLLNDYMQEISDPAHRAEQEMYLRQLENDNKVPTDKQLVLPKPGFVVKTKY------KQRKIFVNVCSSEKMQPPSSTRVASTPSTAGGTSWNLPYCVGPQRMEPDKGGQSIATYDVCYHP 162          
BLAST of mRNA_C-australica_Contig_1021.6.1 vs. uniprot
Match: A0A835YSW6_9STRA (Pre-RNA processing PIH1/Nop17-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSW6_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.810e-25
Identity = 57/132 (43.18%), Postives = 80/132 (60.61%), Query Frame = 1
Query:    4 KFREAFKDEEFRKMFGEYMQEISDPKYRKEQEAYITQLEGENRVPQGKQLVRPSKGMVVKTSYC-GENSGSKEKMFINIVVSEKIAPPKF----QKESGGMTMTLPTASGGMHLEKDSKGQDTTTFDVCVHP 384
            K + +  D +FR +  EYM EISDPKYR+EQE YI QLE E +VPQGK+L+RP  G V KT +    +     K+F+N+V S  +  P+     + + GG+ ++LP A+G   +E+D  G    T DVC HP
Sbjct:   30 KLKTSMADPQFRTLLNEYMAEISDPKYRQEQEMYINQLETEQKVPQGKKLIRPQPGFVAKTRFAPAADPQDARKLFVNVVQSADVGAPERAAAQEGDKGGVQLSLPHAAGPPRMEQDKSGAAAATVDVCFHP 161          
BLAST of mRNA_C-australica_Contig_1021.6.1 vs. uniprot
Match: A0A067BY01_SAPPC (Protein kintoun n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BY01_SAPPC)

HSP 1 Score: 106 bits (265), Expect = 2.810e-24
Identity = 61/132 (46.21%), Postives = 75/132 (56.82%), Query Frame = 1
Query:    7 FREAFKDEEFRKMFGEYMQEISDPKYRKEQEAYITQLEGENRVPQGKQLVRPSKGMVVKTSYCGENSGSKEKMFINIVVSEKIAPPKFQKES------GGMTMTLPTASGGMHLEKDSKGQDTTTFDVCVHP 384
            F +A KD EFR +  EYM EISDP +R EQEAY+ QLE +N+VP  KQLV P+ G V+KT           K+F+NI  S+KI PP   K +       G +  LP   G   +E D  GQ   TFDVC HP
Sbjct:   36 FVKAMKDPEFRSLLNEYMLEISDPTHRAEQEAYLRQLENDNKVPTDKQLVLPTPGFVLKTKL------QARKVFVNICSSDKIQPPSSTKVAPSPQVAAGTSWNLPYCVGPQRMEHDKGGQAVMTFDVCYHP 161          
BLAST of mRNA_C-australica_Contig_1021.6.1 vs. uniprot
Match: T0QNF0_SAPDV (Protein kintoun n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QNF0_SAPDV)

HSP 1 Score: 105 bits (262), Expect = 7.140e-24
Identity = 60/132 (45.45%), Postives = 75/132 (56.82%), Query Frame = 1
Query:    7 FREAFKDEEFRKMFGEYMQEISDPKYRKEQEAYITQLEGENRVPQGKQLVRPSKGMVVKTSYCGENSGSKEKMFINIVVSEKIAPPKFQKES------GGMTMTLPTASGGMHLEKDSKGQDTTTFDVCVHP 384
            F +A KD EFR +  EYM EISDP +R EQEAY+ QLE +N+VP  KQLV P+ G V+KT           K+F+NI  S+KI PP   K +       G +  LP   G   +E D  G+   TFDVC HP
Sbjct:   36 FVKAMKDPEFRSLLNEYMLEISDPTHRAEQEAYLRQLENDNKVPTDKQLVLPTPGFVLKTKL------EARKLFVNICSSDKIQPPSSTKVAPSPQVAAGTSWNLPYCVGPQRMEHDKGGKAVMTFDVCYHP 161          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1021.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6U1AP86_9STRA1.310e-3451.97Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
D7FKK0_ECTSI1.530e-3047.73PIH1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
F0YEB3_AURAN7.030e-2847.244a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
A0A7S1XY41_9STRA3.980e-2745.04Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A6G0WI70_9STRA4.250e-2748.48Protein kintoun n=1 Tax=Aphanomyces euteiches TaxI... [more]
K0SV46_THAOC5.940e-2742.86Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A024TPK8_9STRA5.000e-2645.45Protein kintoun n=1 Tax=Aphanomyces invadans TaxID... [more]
A0A835YSW6_9STRA1.810e-2543.18Pre-RNA processing PIH1/Nop17-domain-containing pr... [more]
A0A067BY01_SAPPC2.810e-2446.21Protein kintoun n=1 Tax=Saprolegnia parasitica (st... [more]
T0QNF0_SAPDV7.140e-2445.45Protein kintoun n=1 Tax=Saprolegnia diclina (strai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1021contigC-australica_Contig_1021:11439..12593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog42099.EPrPV00000018404
PFAMsPIH1
Model size387
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons6
Evalue8.31e-30
EggNOG OGsKOG4356@1|root,KOG4356@2759|Eukaryota,1METN@121069|Pythiales
DescriptionSource PGD
Cds size384
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1021.6.1prot_C-australica_Contig_1021.6.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1021 11439..12592 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586759.0843723-CDS-C-australica_Contig_1021:11438..114761682586759.0843723-CDS-C-australica_Contig_1021:11438..11476Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 11439..11476 +
1682586759.0958693-CDS-C-australica_Contig_1021:11549..115971682586759.0958693-CDS-C-australica_Contig_1021:11549..11597Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 11550..11597 +
1682586759.1056666-CDS-C-australica_Contig_1021:11663..117351682586759.1056666-CDS-C-australica_Contig_1021:11663..11735Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 11664..11735 +
1682586759.1151686-CDS-C-australica_Contig_1021:11854..119631682586759.1151686-CDS-C-australica_Contig_1021:11854..11963Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 11855..11963 +
1682586759.1250968-CDS-C-australica_Contig_1021:12116..121851682586759.1250968-CDS-C-australica_Contig_1021:12116..12185Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 12117..12185 +
1682586759.1358564-CDS-C-australica_Contig_1021:12544..125921682586759.1358564-CDS-C-australica_Contig_1021:12544..12592Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1021 12545..12592 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1021.6.1

>prot_C-australica_Contig_1021.6.1 ID=prot_C-australica_Contig_1021.6.1|Name=mRNA_C-australica_Contig_1021.6.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=128bp
RKFREAFKDEEFRKMFGEYMQEISDPKYRKEQEAYITQLEGENRVPQGKQ
LVRPSKGMVVKTSYCGENSGSKEKMFINIVVSEKIAPPKFQKESGGMTMT
LPTASGGMHLEKDSKGQDTTTFDVCVHP
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mRNA from alignment at C-australica_Contig_1021:11439..12593+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1021.6.1 ID=mRNA_C-australica_Contig_1021.6.1|Name=mRNA_C-australica_Contig_1021.6.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1155bp|location=Sequence derived from alignment at C-australica_Contig_1021:11439..12593+ (Chrysoparadoxa australica CS_1217)
AGGAAGTTCAGAGAGGCGTTCAAGGACGAGGAGTTCAGGTGAGCTTTAGG CCCCTCTGGCCCCTTCTCAGTCCTCCCCCTATCCCGGCTCATTCCCTTTC CCTTTACCCAGAAAAATGTTTGGGGAGTATATGCAGGAGATTAGTGACCC AAAGTACAGGTACTGCTGGAATACCTTTGTATAACTAACTTAGCTAGAAG ATTAACTTATCGCCTGATCCTACAGGAAGGAGCAAGAGGCCTATATCACA CAGCTGGAGGGGGAGAATAGAGTACCCCAGGGCAAGCAGCTTGTCCGGTG AGTGAACAAAGCGGTTCAGATTTCCAGCTCAATGTCTGCCAGGCAGAAGA AGAAATACCAAATGCCCTGAAGCATCTCCATCTCTTCGGCACTCAGCTTT CTTTTGACCTTTGCAGGCCCAGCAAGGGTATGGTGGTGAAGACCAGTTAC TGCGGCGAAAACAGTGGTAGTAAGGAAAAAATGTTCATCAACATAGTGGT CAGCGAGAAAATCGCTCCTCCCAAGGTTCTCGCCCTCTACAACTGCATCT GCAGTCTGTTACCGTTGTCTGCTTGCGCCTTACGCAGCAGCTGCTTCTCT AATGGAATGTGAACGTGTCCATGGCGCTCCTAATCTCTCTTTGCACCTGC CCTGCCTTCCTTTGATTGTCGCTTTTAGTTCCAGAAGGAGTCGGGTGGCA TGACCATGACGCTGCCAACTGCGTCAGGCGGGATGCACCTAGAGAAGGTC ACTATCACCTCACCCTCACTGGGTCCTTCACGAGCTTCACTCTACCTCAT GTCCCTCACTCAAGCAACCGGCTGCTCAATGCACCACAGTCCTCACTTTG GTGACCCAAGAGTCAGATGTTGCAATTGTTTCCAAAATATTTTTTAAAGT TATTTTAACTCCTAGAGCCGCATGAATGCCAGAGCAGCCAACCGGCCGCT CAGCATGACTCGCCCACCTTTGGCACTAACCTCACCTGGCGATCAGCAAT GCCACCACAATACTGAGTCAGAGGGGCACCAACAAGTGCCAGCTTGGGTC ATCTCTGTAGCTCTGTACCACCGAGGCAAGCTGCTTACAACGCTTTGCCT CGACAGGACAGCAAGGGGCAGGACACGACCACCTTTGACGTATGCGTGCA CCCGG
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Coding sequence (CDS) from alignment at C-australica_Contig_1021:11439..12593+

>mRNA_C-australica_Contig_1021.6.1 ID=mRNA_C-australica_Contig_1021.6.1|Name=mRNA_C-australica_Contig_1021.6.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=384bp|location=Sequence derived from alignment at C-australica_Contig_1021:11439..12593+ (Chrysoparadoxa australica CS_1217)
AGGAAGTTCAGAGAGGCGTTCAAGGACGAGGAGTTCAGAAAAATGTTTGG
GGAGTATATGCAGGAGATTAGTGACCCAAAGTACAGGAAGGAGCAAGAGG
CCTATATCACACAGCTGGAGGGGGAGAATAGAGTACCCCAGGGCAAGCAG
CTTGTCCGGCCCAGCAAGGGTATGGTGGTGAAGACCAGTTACTGCGGCGA
AAACAGTGGTAGTAAGGAAAAAATGTTCATCAACATAGTGGTCAGCGAGA
AAATCGCTCCTCCCAAGTTCCAGAAGGAGTCGGGTGGCATGACCATGACG
CTGCCAACTGCGTCAGGCGGGATGCACCTAGAGAAGGACAGCAAGGGGCA
GGACACGACCACCTTTGACGTATGCGTGCACCCG
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