mRNA_C-australica_Contig_1021.6.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1021.6.1 vs. uniprot
Match: A0A6U1AP86_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AP86_9STRA) HSP 1 Score: 130 bits (327), Expect = 1.310e-34 Identity = 66/127 (51.97%), Postives = 85/127 (66.93%), Query Frame = 1 Query: 4 KFREAFKDEEFRKMFGEYMQEISDPKYRKEQEAYITQLEGENRVPQGKQLVRPSKGMVVKTSYCGENSGSKEKMFINIVVSEKIAPPKFQKESGGMTMTLPTASGGMHLEKDSKGQDTTTFDVCVHP 384 KFR AF D +FR+M +YM EISDPK+R EQEAYIT+LE E++VP+GK+LVRPS VVKT + K+FIN+V S+KIA PK + GG++ +LP + G +E D G TFD C HP Sbjct: 47 KFRNAFGDPKFREMLADYMDEISDPKHRAEQEAYITKLENEDQVPEGKELVRPSAAFVVKTHTEDADKAKGSKVFINVVQSDKIAEPKATPQKGGVSYSLPLSLGPKRMESDKGGATVPTFDACFHP 173
BLAST of mRNA_C-australica_Contig_1021.6.1 vs. uniprot
Match: D7FKK0_ECTSI (PIH1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK0_ECTSI) HSP 1 Score: 117 bits (293), Expect = 1.530e-30 Identity = 63/132 (47.73%), Postives = 84/132 (63.64%), Query Frame = 1 Query: 4 KFREAFKDEEFRKMFGEYMQEISDPKYRKEQEAYITQLEGENRVPQGKQLVRPSKGMVVKTSYC-GENSGSKEKMFINIVVSEKIAPPKFQKES----GGMTMTLPTASGGMHLEKDSKGQDTTTFDVCVHP 384 KF+ A + EF+ M +YM+E+ DPK R EQE YI++LE +NRVP+GK++V P G V+KT + G EK+F N+V S+K+A P + K S GG +LP A G + EKD G TTTFDVC HP Sbjct: 32 KFKTALGEPEFQAMLRDYMEEMQDPKQRAEQELYISELESQNRVPEGKEVVHPLPGFVIKTRFTRGSKDAEPEKLFTNVVTSDKLAKP-YSKISNSRPGGEAWSLPVAVGPLRKEKDKGGGSTTTFDVCYHP 162
BLAST of mRNA_C-australica_Contig_1021.6.1 vs. uniprot
Match: F0YEB3_AURAN (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEB3_AURAN) HSP 1 Score: 117 bits (292), Expect = 7.030e-28 Identity = 60/127 (47.24%), Postives = 77/127 (60.63%), Query Frame = 1 Query: 4 KFREAFKDEEFRKMFGEYMQEISDPKYRKEQEAYITQLEGENRVPQGKQLVRPSKGMVVKTSYCGENSGSKEKMFINIVVSEKIAPPKFQKESGGMTMTLPTASGGMHLEKDSKGQDTTTFDVCVHP 384 KF++AF D EFRKM EY+ EISDPKYR+EQ YI ++E + P+GK L+ P G VVKT G+ + K+FINIV SEK+ P+ GG LP G +E+D K +TFD C HP Sbjct: 1309 KFKKAFGDPEFRKMMAEYVDEISDPKYREEQNQYIREMEAKGETPKGKALIHPKAGFVVKTRKMGKADHTGAKVFINIVSSEKLQEPEATPCDGGSRWALPHLLGPPRMERDKKDATVSTFDCCFHP 1435
BLAST of mRNA_C-australica_Contig_1021.6.1 vs. uniprot
Match: A0A7S1XY41_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XY41_9STRA) HSP 1 Score: 110 bits (274), Expect = 3.980e-27 Identity = 59/131 (45.04%), Postives = 80/131 (61.07%), Query Frame = 1 Query: 1 RKFREAFKDEEFRKMFGEYMQEISDPKYRKEQEAYITQLEGENRVPQGKQLVRPSKGMVVKTSYCGENSGS---KEKMFINIVVSEKIAPPKFQKESGGMTMTLPTASGGMHLEKDSKGQDTTTFDVCVHP 384 +KF+ AF + EFRK+ EYM EISDP +R EQEAYI QLE +N+VP K+L+ P G VVKT G + + +EK+FINIV E++ P + G LP + G +E+D +G T D+C HP Sbjct: 45 KKFQAAFDEPEFRKLLSEYMDEISDPAHRAEQEAYIRQLEADNKVPTNKELIHPMPGFVVKTHRSGGGAPAEIDREKIFINIVGHERMEEPTSMRTDQGENWRLPYSLGPRRVEQDKRGGVVPTQDICFHP 175
BLAST of mRNA_C-australica_Contig_1021.6.1 vs. uniprot
Match: A0A6G0WI70_9STRA (Protein kintoun n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WI70_9STRA) HSP 1 Score: 114 bits (286), Expect = 4.250e-27 Identity = 64/132 (48.48%), Postives = 79/132 (59.85%), Query Frame = 1 Query: 7 FREAFKDEEFRKMFGEYMQEISDPKYRKEQEAYITQLEGENRVPQGKQLVRPSKGMVVKTSYCGENSGSKEKMFINIVVSEKIAPPKFQK------ESGGMTMTLPTASGGMHLEKDSKGQDTTTFDVCVHP 384 F +A KD EFR + EYMQEISDP++R EQE Y+ QLE EN+VP KQLV P G VVKT Y ++KMFINI S+K+ PP + + G + LP G +E+D GQ TFDVC HP Sbjct: 34 FLKAMKDPEFRSLLNEYMQEISDPQHRAEQEMYLRQLENENKVPTDKQLVLPKPGFVVKTKY------KQKKMFINICSSDKMQPPSSTRIAATTSTAAGTSWNLPYCVGPQRMEQDKGGQAVMTFDVCHHP 159
BLAST of mRNA_C-australica_Contig_1021.6.1 vs. uniprot
Match: K0SV46_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SV46_THAOC) HSP 1 Score: 112 bits (279), Expect = 5.940e-27 Identity = 54/126 (42.86%), Postives = 83/126 (65.87%), Query Frame = 1 Query: 16 AFKDEEFRKMFGEYMQEISDPKYRKEQEAYITQLEGENRVPQGKQLVRPSKGMVVKTSYCGENSGSKE---KMFINIVVSEKIAPPKFQKESGGMTMTLPTASGGMHLEKDSKGQDTTTFDVCVHP 384 AF D +FR++ EY++E+SDP R+EQEAY++QLE +N P GK+L+RP+KG V+K + K+F+N+V SE++A P + GG + +LP A G + +E+D++G+ TFD C HP Sbjct: 23 AFGDRDFRELLKEYVKELSDPASRREQEAYLSQLESQNETPGGKKLIRPAKGFVLKCLHRKRRDSPATRPAKLFVNVVHSEEVAAPSASERDGGTSWSLPHALGPLRMEQDNRGRLVPTFDCCFHP 148
BLAST of mRNA_C-australica_Contig_1021.6.1 vs. uniprot
Match: A0A024TPK8_9STRA (Protein kintoun n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TPK8_9STRA) HSP 1 Score: 111 bits (278), Expect = 5.000e-26 Identity = 60/132 (45.45%), Postives = 77/132 (58.33%), Query Frame = 1 Query: 7 FREAFKDEEFRKMFGEYMQEISDPKYRKEQEAYITQLEGENRVPQGKQLVRPSKGMVVKTSYCGENSGSKEKMFINIVVSEKIAPPKFQK------ESGGMTMTLPTASGGMHLEKDSKGQDTTTFDVCVHP 384 F +A KD EFR + +YMQEISDP +R EQE Y+ QLE +N+VP KQLV P G VVKT Y + K+F+N+ SEK+ PP + +GG + LP G +E D GQ T+DVC HP Sbjct: 37 FLKAMKDPEFRTLLNDYMQEISDPAHRAEQEMYLRQLENDNKVPTDKQLVLPKPGFVVKTKY------KQRKIFVNVCSSEKMQPPSSTRVASTPSTAGGTSWNLPYCVGPQRMEPDKGGQSIATYDVCYHP 162
BLAST of mRNA_C-australica_Contig_1021.6.1 vs. uniprot
Match: A0A835YSW6_9STRA (Pre-RNA processing PIH1/Nop17-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSW6_9STRA) HSP 1 Score: 110 bits (274), Expect = 1.810e-25 Identity = 57/132 (43.18%), Postives = 80/132 (60.61%), Query Frame = 1 Query: 4 KFREAFKDEEFRKMFGEYMQEISDPKYRKEQEAYITQLEGENRVPQGKQLVRPSKGMVVKTSYC-GENSGSKEKMFINIVVSEKIAPPKF----QKESGGMTMTLPTASGGMHLEKDSKGQDTTTFDVCVHP 384 K + + D +FR + EYM EISDPKYR+EQE YI QLE E +VPQGK+L+RP G V KT + + K+F+N+V S + P+ + + GG+ ++LP A+G +E+D G T DVC HP Sbjct: 30 KLKTSMADPQFRTLLNEYMAEISDPKYRQEQEMYINQLETEQKVPQGKKLIRPQPGFVAKTRFAPAADPQDARKLFVNVVQSADVGAPERAAAQEGDKGGVQLSLPHAAGPPRMEQDKSGAAAATVDVCFHP 161
BLAST of mRNA_C-australica_Contig_1021.6.1 vs. uniprot
Match: A0A067BY01_SAPPC (Protein kintoun n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BY01_SAPPC) HSP 1 Score: 106 bits (265), Expect = 2.810e-24 Identity = 61/132 (46.21%), Postives = 75/132 (56.82%), Query Frame = 1 Query: 7 FREAFKDEEFRKMFGEYMQEISDPKYRKEQEAYITQLEGENRVPQGKQLVRPSKGMVVKTSYCGENSGSKEKMFINIVVSEKIAPPKFQKES------GGMTMTLPTASGGMHLEKDSKGQDTTTFDVCVHP 384 F +A KD EFR + EYM EISDP +R EQEAY+ QLE +N+VP KQLV P+ G V+KT K+F+NI S+KI PP K + G + LP G +E D GQ TFDVC HP Sbjct: 36 FVKAMKDPEFRSLLNEYMLEISDPTHRAEQEAYLRQLENDNKVPTDKQLVLPTPGFVLKTKL------QARKVFVNICSSDKIQPPSSTKVAPSPQVAAGTSWNLPYCVGPQRMEHDKGGQAVMTFDVCYHP 161
BLAST of mRNA_C-australica_Contig_1021.6.1 vs. uniprot
Match: T0QNF0_SAPDV (Protein kintoun n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QNF0_SAPDV) HSP 1 Score: 105 bits (262), Expect = 7.140e-24 Identity = 60/132 (45.45%), Postives = 75/132 (56.82%), Query Frame = 1 Query: 7 FREAFKDEEFRKMFGEYMQEISDPKYRKEQEAYITQLEGENRVPQGKQLVRPSKGMVVKTSYCGENSGSKEKMFINIVVSEKIAPPKFQKES------GGMTMTLPTASGGMHLEKDSKGQDTTTFDVCVHP 384 F +A KD EFR + EYM EISDP +R EQEAY+ QLE +N+VP KQLV P+ G V+KT K+F+NI S+KI PP K + G + LP G +E D G+ TFDVC HP Sbjct: 36 FVKAMKDPEFRSLLNEYMLEISDPTHRAEQEAYLRQLENDNKVPTDKQLVLPTPGFVLKTKL------EARKLFVNICSSDKIQPPSSTKVAPSPQVAAGTSWNLPYCVGPQRMEHDKGGKAVMTFDVCYHP 161 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1021.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1021.6.1 >prot_C-australica_Contig_1021.6.1 ID=prot_C-australica_Contig_1021.6.1|Name=mRNA_C-australica_Contig_1021.6.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=128bp RKFREAFKDEEFRKMFGEYMQEISDPKYRKEQEAYITQLEGENRVPQGKQback to top mRNA from alignment at C-australica_Contig_1021:11439..12593+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1021.6.1 ID=mRNA_C-australica_Contig_1021.6.1|Name=mRNA_C-australica_Contig_1021.6.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1155bp|location=Sequence derived from alignment at C-australica_Contig_1021:11439..12593+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1021:11439..12593+ >mRNA_C-australica_Contig_1021.6.1 ID=mRNA_C-australica_Contig_1021.6.1|Name=mRNA_C-australica_Contig_1021.6.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=384bp|location=Sequence derived from alignment at C-australica_Contig_1021:11439..12593+ (Chrysoparadoxa australica CS_1217)back to top |