mRNA_C-australica_Contig_10204.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: A0A239FU87_9RHOB (NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family n=5 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A239FU87_9RHOB)

HSP 1 Score: 329 bits (843), Expect = 9.740e-113
Identity = 164/175 (93.71%), Postives = 169/175 (96.57%), Query Frame = 1

Query:    4 LHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528
            LH +VG I ALVNNAGVHLKKP+W+VAPDELDRVLDINVRAMFAACGRYVDLHRE GGA+VNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFG PQDVAD VFYLASDRA+YVNGVNLPVDGGYAVGF
Sbjct:   63 LHGRVGTIAALVNNAGVHLKKPIWDVAPDELDRVLDINVRAMFAACGRYVDLHRETGGAVVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGTPQDVADAVFYLASDRAAYVNGVNLPVDGGYAVGF 237

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BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: A0A0W7WHA7_9RHOB (Uncharacterized protein n=1 Tax=Ponticoccus marisrubri TaxID=1685382 RepID=A0A0W7WHA7_9RHOB)

HSP 1 Score: 313 bits (803), Expect = 1.160e-106
Identity = 154/176 (87.50%), Postives = 166/176 (94.32%), Query Frame = 1

Query:    1 ELHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528
            +LH +VGPI ALVNNAGVHLKKPVW+VAPDELDRVLDIN+RAMFAACGRYV LHR+ GGAIVNIASMG +MALPSAAAYVTAKT VVGLTRSVAVDAAPFGIRCNAVSPGFI+TDMTRA+LAKDPARR++IEGRIPSH FG P +VAD VFYLASDRA+YVNGVNLPVDGGYAVGF
Sbjct:   61 DLHGRVGPIAALVNNAGVHLKKPVWDVAPDELDRVLDINLRAMFAACGRYVALHRDTGGAIVNIASMGAVMALPSAAAYVTAKTGVVGLTRSVAVDAAPFGIRCNAVSPGFIDTDMTRAVLAKDPARRERIEGRIPSHQFGTPANVADAVFYLASDRAAYVNGVNLPVDGGYAVGF 236

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BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: UPI0014883BF3 (SDR family oxidoreductase n=4 Tax=Ruegeria TaxID=97050 RepID=UPI0014883BF3)

HSP 1 Score: 313 bits (801), Expect = 2.510e-106
Identity = 151/175 (86.29%), Postives = 168/175 (96.00%), Query Frame = 1

Query:    4 LHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528
            LH++VGP+ ALVNNAGVHLKKP+W+VAPDELD VLDINVRAMFA CGRYV LHREVGGAIVN+ASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAP+GIRCNAVSPGFI+TDMTRA+LA+DPARRDKIEGRIP+H FG P+DVA+ +FYLASD+A+YVNGVNLPVDGGYA+GF
Sbjct:   64 LHSEVGPLAALVNNAGVHLKKPIWDVAPDELDTVLDINVRAMFAICGRYVALHREVGGAIVNVASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPYGIRCNAVSPGFIDTDMTRAVLARDPARRDKIEGRIPTHRFGLPEDVANSIFYLASDQAAYVNGVNLPVDGGYAIGF 238

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BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: A0A1I6HEB7_9RHOB (Gluconate 5-dehydrogenase n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A1I6HEB7_9RHOB)

HSP 1 Score: 305 bits (781), Expect = 2.780e-103
Identity = 149/176 (84.66%), Postives = 164/176 (93.18%), Query Frame = 1

Query:    1 ELHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528
            ++HA+ GPI+ALVNNAGVHLKKPVW+V+PDE D VLD+NVRAMFA+CGRYV+LHR+ GGAIVNIASMGGIM LPSAAAYVTAKTAVVGLTRSVAVDAA FGIRCNAVSPGFI+TDMTRAILAKDPARRDKIEGRIP   FG PQDVA+ V+YLASD+A+YVNG NLPVDGGYAVGF
Sbjct:   63 DIHAKAGPISALVNNAGVHLKKPVWDVSPDEFDMVLDVNVRAMFASCGRYVNLHRDTGGAIVNIASMGGIMGLPSAAAYVTAKTAVVGLTRSVAVDAAQFGIRCNAVSPGFIDTDMTRAILAKDPARRDKIEGRIPGRKFGTPQDVANTVYYLASDQAAYVNGANLPVDGGYAVGF 238

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BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: UPI0015CA6399 (SDR family oxidoreductase n=1 Tax=Jannaschia marina TaxID=2741674 RepID=UPI0015CA6399)

HSP 1 Score: 305 bits (781), Expect = 2.780e-103
Identity = 152/176 (86.36%), Postives = 162/176 (92.05%), Query Frame = 1

Query:    1 ELHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528
            ++HA+ GPI ALVNNAGVHLKKPVW+VAP E D VLDINVRAMFAACG YV+LHRE GGAIVNIASMG IMALPSAAAYVTAKTAVVGLTRSVAVDAA FGIRCNAVSPGFIETDMTRAILAKD ARR++IEGRIP+H FG P+DVAD VFYLASDRA YVNGVN+PVDGGYAVGF
Sbjct:   63 DIHAEAGPINALVNNAGVHLKKPVWDVAPAEFDHVLDINVRAMFAACGHYVELHRETGGAIVNIASMGAIMALPSAAAYVTAKTAVVGLTRSVAVDAAGFGIRCNAVSPGFIETDMTRAILAKDLARRERIEGRIPTHRFGTPEDVADAVFYLASDRARYVNGVNMPVDGGYAVGF 238

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BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: UPI0008D523D8 (SDR family oxidoreductase n=1 Tax=Marinovum algicola TaxID=42444 RepID=UPI0008D523D8)

HSP 1 Score: 300 bits (769), Expect = 1.870e-101
Identity = 144/175 (82.29%), Postives = 164/175 (93.71%), Query Frame = 1

Query:    4 LHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528
            +HA  GPI ALVNNAGVH KKP+WEV P+ LD+VLDINVRAMFAACGRYV LH++ GGAIVN++SMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAA FGIRCNAVSPGFI+TDMTRA+LAKDPARRD+IE RIP+H+FG+P+DVA+ +FYLASD+A+YVNGVNLPVDGGYA+GF
Sbjct:   64 IHAGAGPIAALVNNAGVHFKKPIWEVPPEALDQVLDINVRAMFAACGRYVSLHQDSGGAIVNVSSMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAQFGIRCNAVSPGFIDTDMTRAVLAKDPARRDRIESRIPTHSFGQPEDVANAIFYLASDQAAYVNGVNLPVDGGYAIGF 238

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BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: UPI000B0190BC (SDR family oxidoreductase n=2 Tax=Ectothiorhodospiraceae TaxID=72276 RepID=UPI000B0190BC)

HSP 1 Score: 298 bits (763), Expect = 1.530e-100
Identity = 143/175 (81.71%), Postives = 162/175 (92.57%), Query Frame = 1

Query:    4 LHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528
            +HA+ GP+  LVNNAGVHLKKPVWEVAPDELDRVL +NVR+MF ACGRYV LHR+ GGAIVN+ASMGG+MALPSAAAY+TAKTAVVGLTRSVAVDAA FGIRCNAVSPGFI+TDMTRA+LAKDPARR++IE RIP+ AFG P+DVAD +FYLASD+A+YVNGVNLPVDGGY +GF
Sbjct:   64 IHAKAGPLAVLVNNAGVHLKKPVWEVAPDELDRVLSVNVRSMFIACGRYVTLHRKTGGAIVNLASMGGMMALPSAAAYITAKTAVVGLTRSVAVDAAEFGIRCNAVSPGFIDTDMTRAVLAKDPARRERIERRIPTGAFGTPEDVADAIFYLASDQAAYVNGVNLPVDGGYVIGF 238

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BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: UPI0009E5265C (SDR family oxidoreductase n=1 Tax=Pseudorhodobacter wandonensis TaxID=1120568 RepID=UPI0009E5265C)

HSP 1 Score: 298 bits (762), Expect = 2.170e-100
Identity = 149/176 (84.66%), Postives = 161/176 (91.48%), Query Frame = 1

Query:    1 ELHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528
            ++HA+ GPI ALVNNAGVHLKKPVW+V+ DELD VL INV AMFAACGRY+ LHR+ GGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAA FGIRCNAVSPGFI+TDMTRAILAKDPARRDKIEGRIP   FG P+DVA+ VFYLASD+A+YVNGVNL VDGGYAVGF
Sbjct:   63 QIHAKAGPIAALVNNAGVHLKKPVWDVSRDELDHVLGINVGAMFAACGRYIALHRDTGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAQFGIRCNAVSPGFIDTDMTRAILAKDPARRDKIEGRIPGRKFGTPEDVANAVFYLASDQAAYVNGVNLQVDGGYAVGF 238

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BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: A0A1M5QJ24_9RHOB (Gluconate 5-dehydrogenase n=1 Tax=Cognatishimia maritima TaxID=870908 RepID=A0A1M5QJ24_9RHOB)

HSP 1 Score: 296 bits (757), Expect = 1.250e-99
Identity = 146/172 (84.88%), Postives = 160/172 (93.02%), Query Frame = 1

Query:   13 QVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528
            + GPI ALVNNAGVHLKKP+W+VA DELD VL+INVRAMFAACG YV LH+E GGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAA FGIRCNAVSPGFI+TDMTRA+LAKDPARRDKIEGRIP+H FG  +DVA+ +FYLASD+A+YVNGVNLPVDGGYA+GF
Sbjct:   67 EYGPIAALVNNAGVHLKKPIWDVAADELDTVLNINVRAMFAACGAYVRLHKETGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAQFGIRCNAVSPGFIDTDMTRAVLAKDPARRDKIEGRIPTHNFGAAEDVANAIFYLASDQAAYVNGVNLPVDGGYAIGF 238

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BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: UPI000DF36A2E (SDR family oxidoreductase n=1 Tax=Notoacmeibacter marinus TaxID=1876515 RepID=UPI000DF36A2E)

HSP 1 Score: 285 bits (729), Expect = 2.290e-95
Identity = 138/175 (78.86%), Postives = 159/175 (90.86%), Query Frame = 1

Query:    4 LHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528
            +HA+ G +  LVNNAG+HLKKPVW V+ DE D VL++N+RAMF ACGR+V LHR+ GGAIVN+ASMGGIMALPSAAAYVTAKT VVGLTRSVAVDAA FGIRCNAVSPGFI+TDMTRA+LAKDPARR+KIEGRIP+H FG P+DVA+ +FYLAS++A+YVNGVNLPVDGGYAVGF
Sbjct:   64 IHAEHGNLDVLVNNAGLHLKKPVWNVSSDEFDAVLNLNIRAMFMACGRFVALHRKHGGAIVNVASMGGIMALPSAAAYVTAKTGVVGLTRSVAVDAAQFGIRCNAVSPGFIDTDMTRAVLAKDPARREKIEGRIPTHRFGSPEDVANAIFYLASEQAAYVNGVNLPVDGGYAVGF 238

The following BLAST results are available for this feature:

BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot

BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
A0A239FU87_9RHOB	9.740e-113	93.71	NAD(P)-dependent dehydrogenase, short-chain alcoho...	[more]
A0A0W7WHA7_9RHOB	1.160e-106	87.50	Uncharacterized protein n=1 Tax=Ponticoccus marisr...	[more]
UPI0014883BF3	2.510e-106	86.29	SDR family oxidoreductase n=4 Tax=Ruegeria TaxID=9...	[more]
A0A1I6HEB7_9RHOB	2.780e-103	84.66	Gluconate 5-dehydrogenase n=2 Tax=Rhodobacterales ...	[more]
UPI0015CA6399	2.780e-103	86.36	SDR family oxidoreductase n=1 Tax=Jannaschia marin...	[more]
UPI0008D523D8	1.870e-101	82.29	SDR family oxidoreductase n=1 Tax=Marinovum algico...	[more]
UPI000B0190BC	1.530e-100	81.71	SDR family oxidoreductase n=2 Tax=Ectothiorhodospi...	[more]
UPI0009E5265C	2.170e-100	84.66	SDR family oxidoreductase n=1 Tax=Pseudorhodobacte...	[more]
A0A1M5QJ24_9RHOB	1.250e-99	84.88	Gluconate 5-dehydrogenase n=1 Tax=Cognatishimia ma...	[more]
UPI000DF36A2E	2.290e-95	78.86	SDR family oxidoreductase n=1 Tax=Notoacmeibacter ...	[more]

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Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-australica_Contig_10204:298..828-
coding sequence from alignment at C-australica_Contig_10204:298..828-

protein sequence of mRNA_C-australica_Contig_10204.1.1

>prot_C-australica_Contig_10204.1.1 ID=prot_C-australica_Contig_10204.1.1|Name=mRNA_C-australica_Contig_10204.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=177bp
ELHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRY
VDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPF
GIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVV
FYLASDRASYVNGVNLPVDGGYAVGF*

mRNA from alignment at C-australica_Contig_10204:298..828-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-australica_Contig_10204.1.1 ID=mRNA_C-australica_Contig_10204.1.1|Name=mRNA_C-australica_Contig_10204.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=531bp|location=Sequence derived from alignment at C-australica_Contig_10204:298..828- (Chrysoparadoxa australica CS_1217)
GAATTGCACGCGCAGGTTGGGCCGATCACGGCGCTGGTGAACAACGCGGG
TGTGCATTTGAAAAAGCCGGTTTGGGAGGTGGCGCCGGACGAGCTGGACC
GCGTGCTGGACATCAACGTGCGCGCCATGTTTGCGGCCTGCGGGCGCTAT
GTGGACCTGCACCGCGAGGTCGGCGGGGCCATCGTGAATATCGCCTCGAT
GGGCGGGATCATGGCGCTGCCCTCTGCCGCCGCCTATGTCACGGCCAAGA
CGGCGGTGGTGGGGCTGACCCGCTCTGTGGCCGTGGATGCCGCGCCCTTT
GGCATCCGCTGTAACGCCGTCTCTCCGGGTTTCATCGAAACGGACATGAC
CCGCGCGATCCTGGCCAAGGATCCGGCGCGGCGGGACAAGATCGAGGGGC
GCATTCCGTCCCATGCCTTTGGCAGGCCGCAGGATGTGGCCGACGTTGTG
TTTTACCTCGCCTCTGACCGCGCGTCTTACGTCAACGGCGTCAACCTGCC
CGTCGACGGCGGCTATGCGGTGGGGTTCTGA

Coding sequence (CDS) from alignment at C-australica_Contig_10204:298..828-

>mRNA_C-australica_Contig_10204.1.1 ID=mRNA_C-australica_Contig_10204.1.1|Name=mRNA_C-australica_Contig_10204.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=531bp|location=Sequence derived from alignment at C-australica_Contig_10204:298..828- (Chrysoparadoxa australica CS_1217)
GAATTGCACGCGCAGGTTGGGCCGATCACGGCGCTGGTGAACAACGCGGG
TGTGCATTTGAAAAAGCCGGTTTGGGAGGTGGCGCCGGACGAGCTGGACC
GCGTGCTGGACATCAACGTGCGCGCCATGTTTGCGGCCTGCGGGCGCTAT
GTGGACCTGCACCGCGAGGTCGGCGGGGCCATCGTGAATATCGCCTCGAT
GGGCGGGATCATGGCGCTGCCCTCTGCCGCCGCCTATGTCACGGCCAAGA
CGGCGGTGGTGGGGCTGACCCGCTCTGTGGCCGTGGATGCCGCGCCCTTT
GGCATCCGCTGTAACGCCGTCTCTCCGGGTTTCATCGAAACGGACATGAC
CCGCGCGATCCTGGCCAAGGATCCGGCGCGGCGGGACAAGATCGAGGGGC
GCATTCCGTCCCATGCCTTTGGCAGGCCGCAGGATGTGGCCGACGTTGTG
TTTTACCTCGCCTCTGACCGCGCGTCTTACGTCAACGGCGTCAACCTGCC
CGTCGACGGCGGCTATGCGGTGGGGTTCTGA