mRNA_C-australica_Contig_10204.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: A0A239FU87_9RHOB (NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family n=5 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A239FU87_9RHOB) HSP 1 Score: 329 bits (843), Expect = 9.740e-113 Identity = 164/175 (93.71%), Postives = 169/175 (96.57%), Query Frame = 1 Query: 4 LHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528 LH +VG I ALVNNAGVHLKKP+W+VAPDELDRVLDINVRAMFAACGRYVDLHRE GGA+VNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFG PQDVAD VFYLASDRA+YVNGVNLPVDGGYAVGF Sbjct: 63 LHGRVGTIAALVNNAGVHLKKPIWDVAPDELDRVLDINVRAMFAACGRYVDLHRETGGAVVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGTPQDVADAVFYLASDRAAYVNGVNLPVDGGYAVGF 237
BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: A0A0W7WHA7_9RHOB (Uncharacterized protein n=1 Tax=Ponticoccus marisrubri TaxID=1685382 RepID=A0A0W7WHA7_9RHOB) HSP 1 Score: 313 bits (803), Expect = 1.160e-106 Identity = 154/176 (87.50%), Postives = 166/176 (94.32%), Query Frame = 1 Query: 1 ELHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528 +LH +VGPI ALVNNAGVHLKKPVW+VAPDELDRVLDIN+RAMFAACGRYV LHR+ GGAIVNIASMG +MALPSAAAYVTAKT VVGLTRSVAVDAAPFGIRCNAVSPGFI+TDMTRA+LAKDPARR++IEGRIPSH FG P +VAD VFYLASDRA+YVNGVNLPVDGGYAVGF Sbjct: 61 DLHGRVGPIAALVNNAGVHLKKPVWDVAPDELDRVLDINLRAMFAACGRYVALHRDTGGAIVNIASMGAVMALPSAAAYVTAKTGVVGLTRSVAVDAAPFGIRCNAVSPGFIDTDMTRAVLAKDPARRERIEGRIPSHQFGTPANVADAVFYLASDRAAYVNGVNLPVDGGYAVGF 236
BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: UPI0014883BF3 (SDR family oxidoreductase n=4 Tax=Ruegeria TaxID=97050 RepID=UPI0014883BF3) HSP 1 Score: 313 bits (801), Expect = 2.510e-106 Identity = 151/175 (86.29%), Postives = 168/175 (96.00%), Query Frame = 1 Query: 4 LHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528 LH++VGP+ ALVNNAGVHLKKP+W+VAPDELD VLDINVRAMFA CGRYV LHREVGGAIVN+ASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAP+GIRCNAVSPGFI+TDMTRA+LA+DPARRDKIEGRIP+H FG P+DVA+ +FYLASD+A+YVNGVNLPVDGGYA+GF Sbjct: 64 LHSEVGPLAALVNNAGVHLKKPIWDVAPDELDTVLDINVRAMFAICGRYVALHREVGGAIVNVASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPYGIRCNAVSPGFIDTDMTRAVLARDPARRDKIEGRIPTHRFGLPEDVANSIFYLASDQAAYVNGVNLPVDGGYAIGF 238
BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: A0A1I6HEB7_9RHOB (Gluconate 5-dehydrogenase n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A1I6HEB7_9RHOB) HSP 1 Score: 305 bits (781), Expect = 2.780e-103 Identity = 149/176 (84.66%), Postives = 164/176 (93.18%), Query Frame = 1 Query: 1 ELHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528 ++HA+ GPI+ALVNNAGVHLKKPVW+V+PDE D VLD+NVRAMFA+CGRYV+LHR+ GGAIVNIASMGGIM LPSAAAYVTAKTAVVGLTRSVAVDAA FGIRCNAVSPGFI+TDMTRAILAKDPARRDKIEGRIP FG PQDVA+ V+YLASD+A+YVNG NLPVDGGYAVGF Sbjct: 63 DIHAKAGPISALVNNAGVHLKKPVWDVSPDEFDMVLDVNVRAMFASCGRYVNLHRDTGGAIVNIASMGGIMGLPSAAAYVTAKTAVVGLTRSVAVDAAQFGIRCNAVSPGFIDTDMTRAILAKDPARRDKIEGRIPGRKFGTPQDVANTVYYLASDQAAYVNGANLPVDGGYAVGF 238
BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: UPI0015CA6399 (SDR family oxidoreductase n=1 Tax=Jannaschia marina TaxID=2741674 RepID=UPI0015CA6399) HSP 1 Score: 305 bits (781), Expect = 2.780e-103 Identity = 152/176 (86.36%), Postives = 162/176 (92.05%), Query Frame = 1 Query: 1 ELHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528 ++HA+ GPI ALVNNAGVHLKKPVW+VAP E D VLDINVRAMFAACG YV+LHRE GGAIVNIASMG IMALPSAAAYVTAKTAVVGLTRSVAVDAA FGIRCNAVSPGFIETDMTRAILAKD ARR++IEGRIP+H FG P+DVAD VFYLASDRA YVNGVN+PVDGGYAVGF Sbjct: 63 DIHAEAGPINALVNNAGVHLKKPVWDVAPAEFDHVLDINVRAMFAACGHYVELHRETGGAIVNIASMGAIMALPSAAAYVTAKTAVVGLTRSVAVDAAGFGIRCNAVSPGFIETDMTRAILAKDLARRERIEGRIPTHRFGTPEDVADAVFYLASDRARYVNGVNMPVDGGYAVGF 238
BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: UPI0008D523D8 (SDR family oxidoreductase n=1 Tax=Marinovum algicola TaxID=42444 RepID=UPI0008D523D8) HSP 1 Score: 300 bits (769), Expect = 1.870e-101 Identity = 144/175 (82.29%), Postives = 164/175 (93.71%), Query Frame = 1 Query: 4 LHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528 +HA GPI ALVNNAGVH KKP+WEV P+ LD+VLDINVRAMFAACGRYV LH++ GGAIVN++SMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAA FGIRCNAVSPGFI+TDMTRA+LAKDPARRD+IE RIP+H+FG+P+DVA+ +FYLASD+A+YVNGVNLPVDGGYA+GF Sbjct: 64 IHAGAGPIAALVNNAGVHFKKPIWEVPPEALDQVLDINVRAMFAACGRYVSLHQDSGGAIVNVSSMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAQFGIRCNAVSPGFIDTDMTRAVLAKDPARRDRIESRIPTHSFGQPEDVANAIFYLASDQAAYVNGVNLPVDGGYAIGF 238
BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: UPI000B0190BC (SDR family oxidoreductase n=2 Tax=Ectothiorhodospiraceae TaxID=72276 RepID=UPI000B0190BC) HSP 1 Score: 298 bits (763), Expect = 1.530e-100 Identity = 143/175 (81.71%), Postives = 162/175 (92.57%), Query Frame = 1 Query: 4 LHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528 +HA+ GP+ LVNNAGVHLKKPVWEVAPDELDRVL +NVR+MF ACGRYV LHR+ GGAIVN+ASMGG+MALPSAAAY+TAKTAVVGLTRSVAVDAA FGIRCNAVSPGFI+TDMTRA+LAKDPARR++IE RIP+ AFG P+DVAD +FYLASD+A+YVNGVNLPVDGGY +GF Sbjct: 64 IHAKAGPLAVLVNNAGVHLKKPVWEVAPDELDRVLSVNVRSMFIACGRYVTLHRKTGGAIVNLASMGGMMALPSAAAYITAKTAVVGLTRSVAVDAAEFGIRCNAVSPGFIDTDMTRAVLAKDPARRERIERRIPTGAFGTPEDVADAIFYLASDQAAYVNGVNLPVDGGYVIGF 238
BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: UPI0009E5265C (SDR family oxidoreductase n=1 Tax=Pseudorhodobacter wandonensis TaxID=1120568 RepID=UPI0009E5265C) HSP 1 Score: 298 bits (762), Expect = 2.170e-100 Identity = 149/176 (84.66%), Postives = 161/176 (91.48%), Query Frame = 1 Query: 1 ELHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528 ++HA+ GPI ALVNNAGVHLKKPVW+V+ DELD VL INV AMFAACGRY+ LHR+ GGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAA FGIRCNAVSPGFI+TDMTRAILAKDPARRDKIEGRIP FG P+DVA+ VFYLASD+A+YVNGVNL VDGGYAVGF Sbjct: 63 QIHAKAGPIAALVNNAGVHLKKPVWDVSRDELDHVLGINVGAMFAACGRYIALHRDTGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAQFGIRCNAVSPGFIDTDMTRAILAKDPARRDKIEGRIPGRKFGTPEDVANAVFYLASDQAAYVNGVNLQVDGGYAVGF 238
BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: A0A1M5QJ24_9RHOB (Gluconate 5-dehydrogenase n=1 Tax=Cognatishimia maritima TaxID=870908 RepID=A0A1M5QJ24_9RHOB) HSP 1 Score: 296 bits (757), Expect = 1.250e-99 Identity = 146/172 (84.88%), Postives = 160/172 (93.02%), Query Frame = 1 Query: 13 QVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528 + GPI ALVNNAGVHLKKP+W+VA DELD VL+INVRAMFAACG YV LH+E GGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAA FGIRCNAVSPGFI+TDMTRA+LAKDPARRDKIEGRIP+H FG +DVA+ +FYLASD+A+YVNGVNLPVDGGYA+GF Sbjct: 67 EYGPIAALVNNAGVHLKKPIWDVAADELDTVLNINVRAMFAACGAYVRLHKETGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAQFGIRCNAVSPGFIDTDMTRAVLAKDPARRDKIEGRIPTHNFGAAEDVANAIFYLASDQAAYVNGVNLPVDGGYAIGF 238
BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: UPI000DF36A2E (SDR family oxidoreductase n=1 Tax=Notoacmeibacter marinus TaxID=1876515 RepID=UPI000DF36A2E) HSP 1 Score: 285 bits (729), Expect = 2.290e-95 Identity = 138/175 (78.86%), Postives = 159/175 (90.86%), Query Frame = 1 Query: 4 LHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528 +HA+ G + LVNNAG+HLKKPVW V+ DE D VL++N+RAMF ACGR+V LHR+ GGAIVN+ASMGGIMALPSAAAYVTAKT VVGLTRSVAVDAA FGIRCNAVSPGFI+TDMTRA+LAKDPARR+KIEGRIP+H FG P+DVA+ +FYLAS++A+YVNGVNLPVDGGYAVGF Sbjct: 64 IHAEHGNLDVLVNNAGLHLKKPVWNVSSDEFDAVLNLNIRAMFMACGRFVALHRKHGGAIVNVASMGGIMALPSAAAYVTAKTGVVGLTRSVAVDAAQFGIRCNAVSPGFIDTDMTRAVLAKDPARREKIEGRIPTHRFGSPEDVANAIFYLASEQAAYVNGVNLPVDGGYAVGF 238 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10204.1.1 >prot_C-australica_Contig_10204.1.1 ID=prot_C-australica_Contig_10204.1.1|Name=mRNA_C-australica_Contig_10204.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=177bp ELHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYback to top mRNA from alignment at C-australica_Contig_10204:298..828- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10204.1.1 ID=mRNA_C-australica_Contig_10204.1.1|Name=mRNA_C-australica_Contig_10204.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=531bp|location=Sequence derived from alignment at C-australica_Contig_10204:298..828- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10204:298..828- >mRNA_C-australica_Contig_10204.1.1 ID=mRNA_C-australica_Contig_10204.1.1|Name=mRNA_C-australica_Contig_10204.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=531bp|location=Sequence derived from alignment at C-australica_Contig_10204:298..828- (Chrysoparadoxa australica CS_1217)back to top |