mRNA_C-australica_Contig_10202.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10202.2.1
Unique NamemRNA_C-australica_Contig_10202.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_10202.2.1 vs. uniprot
Match: A0A222E3P2_9RHOB (Succinate dehydrogenase flavoprotein subunit n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E3P2_9RHOB)

HSP 1 Score: 194 bits (494), Expect = 1.120e-62
Identity = 101/106 (95.28%), Postives = 102/106 (96.23%), Query Frame = 1 
Query:    1 RLIGHSLVIIAFATLIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQPTLDCLIDNANAQQIRALAADAVLGPTESTFQIAKDIASKPETLRCLAVNGLPALLR 318
            RLI H LV +A ATLIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQPTLDCLIDNANAQQIRALAADAVLGPTESTFQIAKDIASKPETLRCLAVNGLPALLR
Sbjct:    3 RLIRHCLVGVALATLIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQPTLDCLIDNANAQQIRALAADAVLGPTESTFQIAKDIASKPETLRCLAVNGLPALLR 108
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BLAST of mRNA_C-australica_Contig_10202.2.1 vs. uniprot
Match: A0A239HKC6_9RHOB (Uncharacterized protein n=1 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239HKC6_9RHOB)

HSP 1 Score: 184 bits (468), Expect = 1.030e-58
Identity = 94/106 (88.68%), Postives = 98/106 (92.45%), Query Frame = 1 
Query:    1 RLIGHSLVIIAFATLIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQPTLDCLIDNANAQQIRALAADAVLGPTESTFQIAKDIASKPETLRCLAVNGLPALLR 318
            RLI HSLV  A A L+ C+PQAQDQ+ARNAARSALTPVVSEQFPGVPLQP LDCLIDNANAQQIRALAADAVLGPTEST QIAKDIASKPETLRCLA+NGLPALLR
Sbjct:    3 RLIRHSLVAAALAILVACTPQAQDQIARNAARSALTPVVSEQFPGVPLQPALDCLIDNANAQQIRALAADAVLGPTESTLQIAKDIASKPETLRCLAINGLPALLR 108
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BLAST of mRNA_C-australica_Contig_10202.2.1 vs. uniprot
Match: A0A6F8QBG7_9RHOB (Uncharacterized protein n=7 Tax=Mameliella TaxID=1434019 RepID=A0A6F8QBG7_9RHOB)

HSP 1 Score: 167 bits (422), Expect = 1.070e-51
Identity = 84/106 (79.25%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 RLIGHSLVIIAFATLIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQPTLDCLIDNANAQQIRALAADAVLGPTESTFQIAKDIASKPETLRCLAVNGLPALLR 318
            RL GH   +     L  CSPQAQD++AR+AARSALTPVV++ FPGVPL+PTLDCLIDNANAQQIRALAADAV+GPTEST QIA+DIASKPETLRCLAVNGLPALLR
Sbjct:    3 RLSGHIAALALAGMLAACSPQAQDEIARSAARSALTPVVADTFPGVPLEPTLDCLIDNANAQQIRALAADAVIGPTESTVQIAQDIASKPETLRCLAVNGLPALLR 108
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BLAST of mRNA_C-australica_Contig_10202.2.1 vs. uniprot
Match: UPI001CD673B4 (hypothetical protein n=2 Tax=Rhodobacterales TaxID=204455 RepID=UPI001CD673B4)

HSP 1 Score: 160 bits (406), Expect = 3.020e-49
Identity = 84/106 (79.25%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    4 LIGHSLVIIAFA-TLIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQPTLDCLIDNANAQQIRALAADAVLGPTESTFQIAKDIASKPETLRCLAVNGLPALLR 318
            L  H  +I + A  L  CSP+AQD +ARNAARSAL PVVS++FPGVPLQP LDCLIDNANAQQIRALAADAVLGPTE+T QIAKDIASKPETLRCLA NGLPALLR
Sbjct:    4 LSAHIAIIGSLAGALAACSPEAQDDIARNAARSALAPVVSDRFPGVPLQPALDCLIDNANAQQIRALAADAVLGPTENTVQIAKDIASKPETLRCLAANGLPALLR 109
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BLAST of mRNA_C-australica_Contig_10202.2.1 vs. uniprot
Match: A0A238KX79_9RHOB (Uncharacterized protein n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238KX79_9RHOB)

HSP 1 Score: 150 bits (379), Expect = 6.260e-45
Identity = 73/92 (79.35%), Postives = 83/92 (90.22%), Query Frame = 1 
Query:   43 LIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQPTLDCLIDNANAQQIRALAADAVLGPTESTFQIAKDIASKPETLRCLAVNGLPALLR 318
            L  C+PQ+QDQ+ARNAARSALTPVV EQFPGVP++PTL+CLIDNA+AQQIR LAADA+LGP E+T QI +DIASKPETLRCLA  GLPALLR
Sbjct:   33 LTACTPQSQDQIARNAARSALTPVVMEQFPGVPVEPTLNCLIDNASAQQIRTLAADALLGPNENTLQITRDIASKPETLRCLATTGLPALLR 124
[Close]
BLAST of mRNA_C-australica_Contig_10202.2.1 vs. uniprot
Match: UPI000EF552CE (hypothetical protein n=1 Tax=Tropicibacter sp. LMIT003 TaxID=2267683 RepID=UPI000EF552CE)

HSP 1 Score: 144 bits (363), Expect = 9.540e-43
Identity = 71/93 (76.34%), Postives = 79/93 (84.95%), Query Frame = 1 
Query:   40 TLIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQPTLDCLIDNANAQQIRALAADAVLGPTESTFQIAKDIASKPETLRCLAVNGLPALLR 318
            ++  CSPQAQDQ+ARNAARSA+TPVV ++FPGVPLQP +DC+IDNANA QI ALAADAVLG TEST QI  DI SKPETL CLA  GLPALLR
Sbjct:   13 SVAACSPQAQDQIARNAARSAITPVVQDRFPGVPLQPAIDCIIDNANAAQINALAADAVLGATESTAQIVTDIVSKPETLTCLAAEGLPALLR 105
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BLAST of mRNA_C-australica_Contig_10202.2.1 vs. uniprot
Match: A0A1M5WWI2_9RHOB (Uncharacterized protein n=1 Tax=Marivita hallyeonensis TaxID=996342 RepID=A0A1M5WWI2_9RHOB)

HSP 1 Score: 140 bits (352), Expect = 4.660e-41
Identity = 68/100 (68.00%), Postives = 83/100 (83.00%), Query Frame = 1 
Query:   19 LVIIAFATLIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQPTLDCLIDNANAQQIRALAADAVLGPTESTFQIAKDIASKPETLRCLAVNGLPALLR 318
            L+ +A   L+ CSPQAQD++AR AARSA+TPV++E+FPGVPL+P L+C+IDNA+A QIRALA D+V GPTEST QI  DI S+PETL CLA  GLPALLR
Sbjct:    5 LIWLALPLLVACSPQAQDEIAREAARSAITPVLAERFPGVPLEPALNCIIDNASAVQIRALAIDSVTGPTESTVQIVTDIVSQPETLTCLAAEGLPALLR 104
[Close]
BLAST of mRNA_C-australica_Contig_10202.2.1 vs. uniprot
Match: UPI001FF2DCFF (hypothetical protein n=1 Tax=Marivita sp. S6314 TaxID=2926406 RepID=UPI001FF2DCFF)

HSP 1 Score: 138 bits (348), Expect = 1.680e-40
Identity = 70/99 (70.71%), Postives = 82/99 (82.83%), Query Frame = 1 
Query:   25 IIAFAT-LIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQPTLDCLIDNANAQQIRALAADAVLGPTESTFQIAKDIASKPETLRCLAVNGLPALLR 318
            I+AF   L  CSPQAQD++AR AARSA+TPV+ ++FPGVPL+PTLDC+IDNA+A QIRALA D+V GPTE+T QI  DI SKPETL CLA  GLPALLR
Sbjct:    4 ILAFGLFLAACSPQAQDEIAREAARSAITPVLVDRFPGVPLEPTLDCVIDNASAVQIRALALDSVTGPTENTVQIVSDIVSKPETLTCLAAEGLPALLR 102
[Close]
BLAST of mRNA_C-australica_Contig_10202.2.1 vs. uniprot
Match: A0A1X4NQ32_9RHOB (Uncharacterized protein n=2 Tax=Marivita geojedonensis TaxID=1123756 RepID=A0A1X4NQ32_9RHOB)

HSP 1 Score: 136 bits (343), Expect = 1.060e-39
Identity = 69/102 (67.65%), Postives = 84/102 (82.35%), Query Frame = 1 
Query:   16 SLVIIAFA-TLIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQPTLDCLIDNANAQQIRALAADAVLGPTESTFQIAKDIASKPETLRCLAVNGLPALLR 318
            +L++IA    L  CSPQAQD++AR+AARSA+TPV+ E+FPGVPL+P L+C+IDNA+A QIR+LA D+V GPTEST QI  DI SKPETL CLA  GLPALLR
Sbjct:    4 TLILIAMGLVLAACSPQAQDRIARDAARSAITPVLVERFPGVPLEPALNCVIDNASAVQIRSLALDSVTGPTESTVQIVTDIVSKPETLTCLAAEGLPALLR 105
[Close]
BLAST of mRNA_C-australica_Contig_10202.2.1 vs. uniprot
Match: UPI001C38EBAF (hypothetical protein n=1 Tax=Thalassococcus sp. CAU 1522 TaxID=2851652 RepID=UPI001C38EBAF)

HSP 1 Score: 135 bits (339), Expect = 4.880e-39
Identity = 67/91 (73.63%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:   43 LIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQPTLDCLIDNANAQQIRALAADAVLGPTESTFQIAKDIASKPETLRCLAVNGLPALL 315
            L  CSPQ QDQ AR+AARSA+TPVV+E+FPGVPLQP +DCLIDNA+A QIRALA D+V GPTE+T QI  DIAS+PETL CLA  GLP LL
Sbjct:   16 LAACSPQQQDQFARDAARSAITPVVAERFPGVPLQPAIDCLIDNASAAQIRALAIDSVTGPTENTAQIVTDIASQPETLTCLANRGLPVLL 106
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10202.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A222E3P2_9RHOB1.120e-6295.28Succinate dehydrogenase flavoprotein subunit n=3 T... [more]
A0A239HKC6_9RHOB1.030e-5888.68Uncharacterized protein n=1 Tax=Antarctobacter hel... [more]
A0A6F8QBG7_9RHOB1.070e-5179.25Uncharacterized protein n=7 Tax=Mameliella TaxID=1... [more]
UPI001CD673B43.020e-4979.25hypothetical protein n=2 Tax=Rhodobacterales TaxID... [more]
A0A238KX79_9RHOB6.260e-4579.35Uncharacterized protein n=1 Tax=Maliponia aquimari... [more]
UPI000EF552CE9.540e-4376.34hypothetical protein n=1 Tax=Tropicibacter sp. LMI... [more]
A0A1M5WWI2_9RHOB4.660e-4168.00Uncharacterized protein n=1 Tax=Marivita hallyeone... [more]
UPI001FF2DCFF1.680e-4070.71hypothetical protein n=1 Tax=Marivita sp. S6314 Ta... [more]
A0A1X4NQ32_9RHOB1.060e-3967.65Uncharacterized protein n=2 Tax=Marivita geojedone... [more]
UPI001C38EBAF4.880e-3973.63hypothetical protein n=1 Tax=Thalassococcus sp. CA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10202contigC-australica_Contig_10202:513..833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1123237.Salmuc_04795
Model size321
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue5.43e-36
EggNOG OGs2CVUM@1|root,32SYC@2|Bacteria,1N58V@1224|Proteobacteria,2UEME@28211|Alphaproteobacteria
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586758.595054-CDS-C-australica_Contig_10202:512..8331682586758.595054-CDS-C-australica_Contig_10202:512..833Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10202 513..833 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10202.2.1prot_C-australica_Contig_10202.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10202 513..833 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10202.2.1

>prot_C-australica_Contig_10202.2.1 ID=prot_C-australica_Contig_10202.2.1|Name=mRNA_C-australica_Contig_10202.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=107bp
RLIGHSLVIIAFATLIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQP
TLDCLIDNANAQQIRALAADAVLGPTESTFQIAKDIASKPETLRCLAVNG
LPALLR*
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mRNA from alignment at C-australica_Contig_10202:513..833-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10202.2.1 ID=mRNA_C-australica_Contig_10202.2.1|Name=mRNA_C-australica_Contig_10202.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=321bp|location=Sequence derived from alignment at C-australica_Contig_10202:513..833- (Chrysoparadoxa australica CS_1217)
CGATTGATCGGTCATAGCCTCGTTATTATTGCGTTTGCGACCCTCATTGG
TTGCTCACCGCAGGCGCAGGATCAACTTGCTCGCAACGCAGCGCGCAGTG
CGCTGACCCCTGTGGTGTCTGAGCAGTTCCCCGGAGTTCCGCTGCAGCCG
ACGCTGGACTGCCTCATCGATAATGCCAATGCGCAGCAGATCCGCGCGCT
GGCTGCCGACGCCGTGCTGGGGCCGACGGAAAGCACGTTTCAGATTGCAA
AGGACATCGCGTCCAAACCCGAAACCCTCCGCTGTCTGGCCGTGAACGGC
CTGCCAGCCTTGCTTCGCTAA
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Coding sequence (CDS) from alignment at C-australica_Contig_10202:513..833-

>mRNA_C-australica_Contig_10202.2.1 ID=mRNA_C-australica_Contig_10202.2.1|Name=mRNA_C-australica_Contig_10202.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=321bp|location=Sequence derived from alignment at C-australica_Contig_10202:513..833- (Chrysoparadoxa australica CS_1217)
CGATTGATCGGTCATAGCCTCGTTATTATTGCGTTTGCGACCCTCATTGG
TTGCTCACCGCAGGCGCAGGATCAACTTGCTCGCAACGCAGCGCGCAGTG
CGCTGACCCCTGTGGTGTCTGAGCAGTTCCCCGGAGTTCCGCTGCAGCCG
ACGCTGGACTGCCTCATCGATAATGCCAATGCGCAGCAGATCCGCGCGCT
GGCTGCCGACGCCGTGCTGGGGCCGACGGAAAGCACGTTTCAGATTGCAA
AGGACATCGCGTCCAAACCCGAAACCCTCCGCTGTCTGGCCGTGAACGGC
CTGCCAGCCTTGCTTCGCTAA
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