mRNA_C-australica_Contig_10202.2.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_10202.2.1 vs. uniprot
Match: A0A222E3P2_9RHOB (Succinate dehydrogenase flavoprotein subunit n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E3P2_9RHOB) HSP 1 Score: 194 bits (494), Expect = 1.120e-62 Identity = 101/106 (95.28%), Postives = 102/106 (96.23%), Query Frame = 1 Query: 1 RLIGHSLVIIAFATLIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQPTLDCLIDNANAQQIRALAADAVLGPTESTFQIAKDIASKPETLRCLAVNGLPALLR 318
RLI H LV +A ATLIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQPTLDCLIDNANAQQIRALAADAVLGPTESTFQIAKDIASKPETLRCLAVNGLPALLR
Sbjct: 3 RLIRHCLVGVALATLIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQPTLDCLIDNANAQQIRALAADAVLGPTESTFQIAKDIASKPETLRCLAVNGLPALLR 108
BLAST of mRNA_C-australica_Contig_10202.2.1 vs. uniprot
Match: A0A239HKC6_9RHOB (Uncharacterized protein n=1 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239HKC6_9RHOB) HSP 1 Score: 184 bits (468), Expect = 1.030e-58 Identity = 94/106 (88.68%), Postives = 98/106 (92.45%), Query Frame = 1 Query: 1 RLIGHSLVIIAFATLIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQPTLDCLIDNANAQQIRALAADAVLGPTESTFQIAKDIASKPETLRCLAVNGLPALLR 318
RLI HSLV A A L+ C+PQAQDQ+ARNAARSALTPVVSEQFPGVPLQP LDCLIDNANAQQIRALAADAVLGPTEST QIAKDIASKPETLRCLA+NGLPALLR
Sbjct: 3 RLIRHSLVAAALAILVACTPQAQDQIARNAARSALTPVVSEQFPGVPLQPALDCLIDNANAQQIRALAADAVLGPTESTLQIAKDIASKPETLRCLAINGLPALLR 108
BLAST of mRNA_C-australica_Contig_10202.2.1 vs. uniprot
Match: A0A6F8QBG7_9RHOB (Uncharacterized protein n=7 Tax=Mameliella TaxID=1434019 RepID=A0A6F8QBG7_9RHOB) HSP 1 Score: 167 bits (422), Expect = 1.070e-51 Identity = 84/106 (79.25%), Postives = 93/106 (87.74%), Query Frame = 1 Query: 1 RLIGHSLVIIAFATLIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQPTLDCLIDNANAQQIRALAADAVLGPTESTFQIAKDIASKPETLRCLAVNGLPALLR 318
RL GH + L CSPQAQD++AR+AARSALTPVV++ FPGVPL+PTLDCLIDNANAQQIRALAADAV+GPTEST QIA+DIASKPETLRCLAVNGLPALLR
Sbjct: 3 RLSGHIAALALAGMLAACSPQAQDEIARSAARSALTPVVADTFPGVPLEPTLDCLIDNANAQQIRALAADAVIGPTESTVQIAQDIASKPETLRCLAVNGLPALLR 108
BLAST of mRNA_C-australica_Contig_10202.2.1 vs. uniprot
Match: UPI001CD673B4 (hypothetical protein n=2 Tax=Rhodobacterales TaxID=204455 RepID=UPI001CD673B4) HSP 1 Score: 160 bits (406), Expect = 3.020e-49 Identity = 84/106 (79.25%), Postives = 91/106 (85.85%), Query Frame = 1 Query: 4 LIGHSLVIIAFA-TLIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQPTLDCLIDNANAQQIRALAADAVLGPTESTFQIAKDIASKPETLRCLAVNGLPALLR 318
L H +I + A L CSP+AQD +ARNAARSAL PVVS++FPGVPLQP LDCLIDNANAQQIRALAADAVLGPTE+T QIAKDIASKPETLRCLA NGLPALLR
Sbjct: 4 LSAHIAIIGSLAGALAACSPEAQDDIARNAARSALAPVVSDRFPGVPLQPALDCLIDNANAQQIRALAADAVLGPTENTVQIAKDIASKPETLRCLAANGLPALLR 109
BLAST of mRNA_C-australica_Contig_10202.2.1 vs. uniprot
Match: A0A238KX79_9RHOB (Uncharacterized protein n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238KX79_9RHOB) HSP 1 Score: 150 bits (379), Expect = 6.260e-45 Identity = 73/92 (79.35%), Postives = 83/92 (90.22%), Query Frame = 1 Query: 43 LIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQPTLDCLIDNANAQQIRALAADAVLGPTESTFQIAKDIASKPETLRCLAVNGLPALLR 318
L C+PQ+QDQ+ARNAARSALTPVV EQFPGVP++PTL+CLIDNA+AQQIR LAADA+LGP E+T QI +DIASKPETLRCLA GLPALLR
Sbjct: 33 LTACTPQSQDQIARNAARSALTPVVMEQFPGVPVEPTLNCLIDNASAQQIRTLAADALLGPNENTLQITRDIASKPETLRCLATTGLPALLR 124
BLAST of mRNA_C-australica_Contig_10202.2.1 vs. uniprot
Match: UPI000EF552CE (hypothetical protein n=1 Tax=Tropicibacter sp. LMIT003 TaxID=2267683 RepID=UPI000EF552CE) HSP 1 Score: 144 bits (363), Expect = 9.540e-43 Identity = 71/93 (76.34%), Postives = 79/93 (84.95%), Query Frame = 1 Query: 40 TLIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQPTLDCLIDNANAQQIRALAADAVLGPTESTFQIAKDIASKPETLRCLAVNGLPALLR 318
++ CSPQAQDQ+ARNAARSA+TPVV ++FPGVPLQP +DC+IDNANA QI ALAADAVLG TEST QI DI SKPETL CLA GLPALLR
Sbjct: 13 SVAACSPQAQDQIARNAARSAITPVVQDRFPGVPLQPAIDCIIDNANAAQINALAADAVLGATESTAQIVTDIVSKPETLTCLAAEGLPALLR 105
BLAST of mRNA_C-australica_Contig_10202.2.1 vs. uniprot
Match: A0A1M5WWI2_9RHOB (Uncharacterized protein n=1 Tax=Marivita hallyeonensis TaxID=996342 RepID=A0A1M5WWI2_9RHOB) HSP 1 Score: 140 bits (352), Expect = 4.660e-41 Identity = 68/100 (68.00%), Postives = 83/100 (83.00%), Query Frame = 1 Query: 19 LVIIAFATLIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQPTLDCLIDNANAQQIRALAADAVLGPTESTFQIAKDIASKPETLRCLAVNGLPALLR 318
L+ +A L+ CSPQAQD++AR AARSA+TPV++E+FPGVPL+P L+C+IDNA+A QIRALA D+V GPTEST QI DI S+PETL CLA GLPALLR
Sbjct: 5 LIWLALPLLVACSPQAQDEIAREAARSAITPVLAERFPGVPLEPALNCIIDNASAVQIRALAIDSVTGPTESTVQIVTDIVSQPETLTCLAAEGLPALLR 104
BLAST of mRNA_C-australica_Contig_10202.2.1 vs. uniprot
Match: UPI001FF2DCFF (hypothetical protein n=1 Tax=Marivita sp. S6314 TaxID=2926406 RepID=UPI001FF2DCFF) HSP 1 Score: 138 bits (348), Expect = 1.680e-40 Identity = 70/99 (70.71%), Postives = 82/99 (82.83%), Query Frame = 1 Query: 25 IIAFAT-LIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQPTLDCLIDNANAQQIRALAADAVLGPTESTFQIAKDIASKPETLRCLAVNGLPALLR 318
I+AF L CSPQAQD++AR AARSA+TPV+ ++FPGVPL+PTLDC+IDNA+A QIRALA D+V GPTE+T QI DI SKPETL CLA GLPALLR
Sbjct: 4 ILAFGLFLAACSPQAQDEIAREAARSAITPVLVDRFPGVPLEPTLDCVIDNASAVQIRALALDSVTGPTENTVQIVSDIVSKPETLTCLAAEGLPALLR 102
BLAST of mRNA_C-australica_Contig_10202.2.1 vs. uniprot
Match: A0A1X4NQ32_9RHOB (Uncharacterized protein n=2 Tax=Marivita geojedonensis TaxID=1123756 RepID=A0A1X4NQ32_9RHOB) HSP 1 Score: 136 bits (343), Expect = 1.060e-39 Identity = 69/102 (67.65%), Postives = 84/102 (82.35%), Query Frame = 1 Query: 16 SLVIIAFA-TLIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQPTLDCLIDNANAQQIRALAADAVLGPTESTFQIAKDIASKPETLRCLAVNGLPALLR 318
+L++IA L CSPQAQD++AR+AARSA+TPV+ E+FPGVPL+P L+C+IDNA+A QIR+LA D+V GPTEST QI DI SKPETL CLA GLPALLR
Sbjct: 4 TLILIAMGLVLAACSPQAQDRIARDAARSAITPVLVERFPGVPLEPALNCVIDNASAVQIRSLALDSVTGPTESTVQIVTDIVSKPETLTCLAAEGLPALLR 105
BLAST of mRNA_C-australica_Contig_10202.2.1 vs. uniprot
Match: UPI001C38EBAF (hypothetical protein n=1 Tax=Thalassococcus sp. CAU 1522 TaxID=2851652 RepID=UPI001C38EBAF) HSP 1 Score: 135 bits (339), Expect = 4.880e-39 Identity = 67/91 (73.63%), Postives = 76/91 (83.52%), Query Frame = 1 Query: 43 LIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQPTLDCLIDNANAQQIRALAADAVLGPTESTFQIAKDIASKPETLRCLAVNGLPALL 315
L CSPQ QDQ AR+AARSA+TPVV+E+FPGVPLQP +DCLIDNA+A QIRALA D+V GPTE+T QI DIAS+PETL CLA GLP LL
Sbjct: 16 LAACSPQQQDQFARDAARSAITPVVAERFPGVPLQPAIDCLIDNASAAQIRALAIDSVTGPTENTAQIVTDIASQPETLTCLANRGLPVLL 106 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10202.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10202.2.1 >prot_C-australica_Contig_10202.2.1 ID=prot_C-australica_Contig_10202.2.1|Name=mRNA_C-australica_Contig_10202.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=107bp RLIGHSLVIIAFATLIGCSPQAQDQLARNAARSALTPVVSEQFPGVPLQPback to top mRNA from alignment at C-australica_Contig_10202:513..833- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10202.2.1 ID=mRNA_C-australica_Contig_10202.2.1|Name=mRNA_C-australica_Contig_10202.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=321bp|location=Sequence derived from alignment at C-australica_Contig_10202:513..833- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10202:513..833- >mRNA_C-australica_Contig_10202.2.1 ID=mRNA_C-australica_Contig_10202.2.1|Name=mRNA_C-australica_Contig_10202.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=321bp|location=Sequence derived from alignment at C-australica_Contig_10202:513..833- (Chrysoparadoxa australica CS_1217)back to top |