mRNA_C-australica_Contig_1020.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1020.1.1
Unique NamemRNA_C-australica_Contig_1020.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_1020.1.1 vs. uniprot
Match: A0A7S1TPK6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPK6_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.050e-16
Identity = 49/112 (43.75%), Postives = 74/112 (66.07%), Query Frame = 1
Query:   64 EGGHNIFNLAGQLDVLQASLCFMVLIGVTVVFEFIVEKLEEALHEAEHYRAMLDKVFKELALLGLISFIVFVFETTGALQAVGGDSWLLSFEYAHILLFFVAMAYVLQALML 399
            +G H++F +   ++  + SLCFM L+G TV+FE     LE  L +  HY  M++K++KEL +LGLISF +F+   T +L      S+ L+FEYAH+L+FFVA+  VLQ++ L
Sbjct:   18 DGHHSVFGMGADMEAFKVSLCFMGLVGFTVLFEMFTSYLEMKL-QGTHYMEMVNKIYKELMILGLISFGLFMGVQTVSLDQ---SSYFLAFEYAHVLIFFVAIFLVLQSIAL 125          
BLAST of mRNA_C-australica_Contig_1020.1.1 vs. uniprot
Match: A0A7S3XNG9_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNG9_HETAK)

HSP 1 Score: 83.2 bits (204), Expect = 9.000e-16
Identity = 48/144 (33.33%), Postives = 87/144 (60.42%), Query Frame = 1
Query:   64 EGGHNIFNLAGQLDVLQASLCFMVLIGVTVVFEFIVEKLEEALHEAEHYRAMLDKVFKELALLGLISFIVFVFETTGALQAVGGDSWLLSFEYAHILLFFVAMAYVLQALMLMLLVVRSDKFWK-----HVDDLTATTLLKKYR 480
            E   ++FNL  +++  +A  CF++L+  T++ E   E +E  L    H+  +++KV+KE+ +LGLISF++F  E    L  +   SW++SFE+AHIL+FFV +++ L ++++ +LV R  + W       +++L      KK+R
Sbjct:    4 EDSSSLFNLKEEINFAEACWCFLILLTATIIIETFTEWIEWVLQGKGHFLVIVNKVYKEVMILGLISFLLFCSEQGPLLDDLD-HSWIISFEFAHILIFFVGVSFCLFSIIICVLVSRGRRSWDAYERYDIEELMGYFAGKKHR 146          
BLAST of mRNA_C-australica_Contig_1020.1.1 vs. uniprot
Match: A0A7S3XMC8_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMC8_HETAK)

HSP 1 Score: 71.2 bits (173), Expect = 3.910e-12
Identity = 42/104 (40.38%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  178 LEEALHEAEHYRAMLDKVFKELALLGLISFIVFVFETTGALQAVGGDSWLLSFEYAHILLFFVAMAYVLQALMLMLLVVRSDKFWK-----HVDDLTATTLLKK 474
            +E ALH  EH+  +++KV+KEL +LGLISF++F  E    L  +   SW++SFE+AHILLFF+ +++ L ++++ +LV R  + W       + +LTA    KK
Sbjct:    2 IEWALHGKEHFLVIVNKVYKELMILGLISFLLFCSEQGPLLDDLD-HSWIISFEFAHILLFFIGISFCLLSVVVCVLVSRGRRSWDAYERYDIQELTAYFAAKK 104          
BLAST of mRNA_C-australica_Contig_1020.1.1 vs. uniprot
Match: A0A7S2RPQ5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RPQ5_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.840e-11
Identity = 42/109 (38.53%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   61 HEGGHNIFNLAGQLDVLQASLCFMVLIGVTVVFEFIVEKLEEALHEAEHYRAMLDKVFKELALLGLISFIVFVFETTGALQAVGGDSWLLSFEYAHILLFFVAMAYVLQ 387
            H   H +F L           CFM++IG+T++ E  +E LEE +     Y ++L K++KEL LLGLISF +F+   T +L+A   D+W ++FE+AH ++FFV +  ++Q
Sbjct:   48 HGSAHTLFELVFLAKSDLVMYCFMMIIGITILAEICLEFLEERVSTT--YHSVLQKMYKELMLLGLISFAIFIL--TSSLEA-DLDNWFIAFEFAHFVMFFVGVMLIMQ 151          
BLAST of mRNA_C-australica_Contig_1020.1.1 vs. uniprot
Match: A0A7S2RPR7_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RPR7_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.190e-11
Identity = 42/109 (38.53%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   61 HEGGHNIFNLAGQLDVLQASLCFMVLIGVTVVFEFIVEKLEEALHEAEHYRAMLDKVFKELALLGLISFIVFVFETTGALQAVGGDSWLLSFEYAHILLFFVAMAYVLQ 387
            H   H +F L           CFM++IG+T++ E  +E LEE +     Y ++L K++KEL LLGLISF +F+   T +L+A   D+W ++FE+AH ++FFV +  ++Q
Sbjct:   48 HGSAHTLFELVFLAKSDLVMYCFMMIIGITILAEICLEFLEERVSTT--YHSVLQKMYKELMLLGLISFAIFIL--TSSLEA-DLDNWFIAFEFAHFVMFFVGVMLIMQ 151          
BLAST of mRNA_C-australica_Contig_1020.1.1 vs. uniprot
Match: A0A3F2RLP5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RLP5_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.420e-9
Identity = 40/129 (31.01%), Postives = 73/129 (56.59%), Query Frame = 1
Query:   70 GHNIFNLAGQLDVLQASLCFMVLIGVTVVFEFIVEKLEEALHEAEHYRAMLDKVFKELALLGLISFIVFVFETTGALQAVGGDSWLLSFEYAHILLFFVAMAYVLQALMLMLLVVRSDKFWKHVDDLTA 456
            G ++F +   +++ Q  +    L    +VFE  +  LE  L   + Y+ ML KV++EL +LGL+SFIV +    G L    G   LL+F+ A +++F +A+  ++QA++++LL+ R ++     D +T 
Sbjct:    3 GGSVFQVGEDVELFQVVVLLSALAMCLLVFETALHHLEHHLSRYDKYQHMLKKVYRELMILGLLSFIVKMLTEVGGLDGYSGT--LLAFQVADLIIFILALVLIIQAILVLLLLRRRNRLSDRADLITT 129          
BLAST of mRNA_C-australica_Contig_1020.1.1 vs. uniprot
Match: A0A7S3UM22_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UM22_HETAK)

HSP 1 Score: 62.0 bits (149), Expect = 1.520e-9
Identity = 38/106 (35.85%), Postives = 62/106 (58.49%), Query Frame = 1
Query:   76 NIFNLAGQLDVLQASLCFMVLIGVTVVFEFIVEKLEEALHEAEHYRAMLDKVFKELALLGLISFIVFVFETTGALQAVGGDSWLLSFEYAHILLFFVAMAYVLQAL 393
            ++F L   L+    + C + +I  T++FE +  ++E  L +   Y  ML KV+KE+ ++G ISF +F+    G    VG    L++FE+AHI +FF A+ +VL AL
Sbjct:    5 SVFGLGASLNTALTTYCLIGIILFTIIFEAVTHRVEHKL-QGTPYMEMLAKVYKEMMIMGFISFGIFMAVQAGG---VGHGDTLVAFEFAHIEVFFTALLFVLSAL 106          
BLAST of mRNA_C-australica_Contig_1020.1.1 vs. uniprot
Match: A0A836CJ86_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ86_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.300e-7
Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 1
Query:   76 NIFNLAGQLDVLQASLCFMVLIGVTVVFEFIVEKLEEALHEAEHYRAMLDKVFKELALLGLISFIVFVFETTGALQAVGGDSWLLSFEYAHILLFFVAMAYVLQALMLM 402
            N+F LA  LD+  +SL  + ++G TV+FE I  KLE  L E   +R ML+K++KEL ++GL+S  V + E +G L  V G ++  SFE         A+ +VLQA M+M
Sbjct:    3 NVFGLASHLDIAISSLALVGVVGFTVIFEHISSKLEHRL-EGTPFREMLNKIYKELMIIGLVSLGVTILENSGNL--VHGTAFY-SFE---------AIFFVLQASMVM 98          
BLAST of mRNA_C-australica_Contig_1020.1.1 vs. uniprot
Match: A0A482SVL1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SVL1_9ARCH)

HSP 1 Score: 60.1 bits (144), Expect = 1.340e-7
Identity = 39/138 (28.26%), Postives = 69/138 (50.00%), Query Frame = 1
Query:   82 FNLAGQLDVLQASLCFMVLIGVTVVFEFIVEKLEEALHEAEHYRAMLDKVFKELALLGLISFIVFVFET----TGALQAVGGDSWLLSFEYAHILLFFVAMAYVLQALMLMLLVVRSDKFWKHVDDLTATTLLKKYRV 483
            F     LD  +   CF+++I   V F+  +  +E  L  +  Y  M+  ++KEL L+G++SFI+ +       +    A  G  W+L  +YAHI+LFF+ + +VL AL  M   + S+  ++         ++K+  V
Sbjct:    6 FGEISYLDPTKTLFCFIMVICFVVAFDVTIGVMEYYLEGSPIYNRMVQTIYKELMLMGVVSFIIIMVRAGRLASNYATAESGAEWVLGIDYAHIVLFFLTVFFVLHALYFMKKSLSSNATYRRKYTKEVAAMIKELDV 143          
BLAST of mRNA_C-australica_Contig_1020.1.1 vs. uniprot
Match: G4YWY0_PHYSP (EF-hand domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YWY0_PHYSP)

HSP 1 Score: 58.9 bits (141), Expect = 4.050e-7
Identity = 38/133 (28.57%), Postives = 74/133 (55.64%), Query Frame = 1
Query:   70 GHNIFNLAGQLDVLQASLCFMVLIGVTVVFEFIVEKLEEALHEAEHYRAMLDKVFKELALLGLISFIVFVFETTGALQAVGGDSWLLSFEYAHILLFFVAMAYVLQALMLMLLVVRSDKFWKHVDDLTATTLL 468
            G ++F +   +++ +  +    L    +VFE  +  LE  L   + Y+ ML KV++EL +LGL+SFI+ +    G +    G   +L+F+ A +++F +A+A VLQA+ +++L+   +K     + +T   L+
Sbjct:    3 GGSVFRVGEDVELFRVLVLLSALATCLLVFEAALHHLEHHLARHDKYQHMLKKVYRELMILGLLSFIIKMLTEVGGIDGYSGT--MLAFQVADLIIFILAIALVLQAIWVLVLLRGHNKRIDRAELITTQDLV 133          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1020.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A7S1TPK6_9STRA2.050e-1643.75Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3XNG9_HETAK9.000e-1633.33Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3XMC8_HETAK3.910e-1240.38Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A7S2RPQ5_9STRA2.840e-1138.53Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2RPR7_9STRA3.190e-1138.53Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A3F2RLP5_9STRA1.420e-931.01Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A7S3UM22_HETAK1.520e-935.85Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A836CJ86_9STRA1.300e-741.28EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A482SVL1_9ARCH1.340e-728.26Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
G4YWY0_PHYSP4.050e-728.57EF-hand domain-containing protein n=1 Tax=Phytopht... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1020contigC-australica_Contig_1020:100..824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LUA9
PFAMsMlo
Model size495
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.29e-11
EggNOG OGs2CKH2@1|root,2RZVJ@2759|Eukaryota
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586757.899355-CDS-C-australica_Contig_1020:99..2301682586757.899355-CDS-C-australica_Contig_1020:99..230Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1020 100..230 -
1682586757.9145703-CDS-C-australica_Contig_1020:316..4521682586757.9145703-CDS-C-australica_Contig_1020:316..452Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1020 317..452 -
1682586757.92268-CDS-C-australica_Contig_1020:522..6361682586757.92268-CDS-C-australica_Contig_1020:522..636Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1020 523..636 -
1682586757.9311721-CDS-C-australica_Contig_1020:710..8241682586757.9311721-CDS-C-australica_Contig_1020:710..824Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1020 711..824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1020.1.1prot_C-australica_Contig_1020.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1020 100..824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1020.1.1

>prot_C-australica_Contig_1020.1.1 ID=prot_C-australica_Contig_1020.1.1|Name=mRNA_C-australica_Contig_1020.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=165bp
MGGIEDVDGHGEAPTGHDEHHEGGHNIFNLAGQLDVLQASLCFMVLIGVT
VVFEFIVEKLEEALHEAEHYRAMLDKVFKELALLGLISFIVFVFETTGAL
QAVGGDSWLLSFEYAHILLFFVAMAYVLQALMLMLLVVRSDKFWKHVDDL
TATTLLKKYRVKVR*
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mRNA from alignment at C-australica_Contig_1020:100..824-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1020.1.1 ID=mRNA_C-australica_Contig_1020.1.1|Name=mRNA_C-australica_Contig_1020.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=725bp|location=Sequence derived from alignment at C-australica_Contig_1020:100..824- (Chrysoparadoxa australica CS_1217)
ATGGGCGGCATTGAGGATGTGGACGGGCATGGCGAGGCACCCACAGGGCA TGACGAGCACCACGAAGGGGGACACAATATCTTCAACCTCGCTGGGCAAC TGGATGTGCTCCAGGTGAAAAACACGTCCTAAATTCACTGCCCTGACATC CAAGCGCTTGACCCTCGGGAACCCTCCTTGCTTGACAGGCAAGCCTCTGC TTCATGGTGCTGATTGGGGTGACAGTGGTGTTTGAGTTCATTGTTGAAAA GCTGGAGGAGGCACTGCATGAGGCAGAGCACTATCGGGCAATGCTTGATA AGGTGGACTGCACCGCAGTTATTGCAGGCATAGGGTCCCACTTCTTCATT AACCCTGAATGTTCTCACTCAGGTCTTCAAGGAGCTCGCATTGCTGGGTC TCATATCCTTCATAGTGTTTGTATTTGAGACCACCGGTGCCTTGCAAGCA GTCGGAGGGGACTCGTGGCTGCTTTCATTCGAATACGCCCACATTCTCCT ATTCTTCGGTAGAGTGACACAAGCGACGAACTGTTTGAGCCTTGCCTGCG CACCTGTGACATCCCCCCTCCCTTCCTCCTTTCTGCCAACGCAGTGGCAA TGGCTTATGTGCTCCAAGCTTTGATGCTTATGCTGTTAGTGGTTAGGAGT GATAAGTTCTGGAAACATGTCGATGACCTGACAGCAACCACGCTACTGAA GAAATATAGAGTCAAGGTTCGCTGA
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Coding sequence (CDS) from alignment at C-australica_Contig_1020:100..824-

>mRNA_C-australica_Contig_1020.1.1 ID=mRNA_C-australica_Contig_1020.1.1|Name=mRNA_C-australica_Contig_1020.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=495bp|location=Sequence derived from alignment at C-australica_Contig_1020:100..824- (Chrysoparadoxa australica CS_1217)
ATGGGCGGCATTGAGGATGTGGACGGGCATGGCGAGGCACCCACAGGGCA
TGACGAGCACCACGAAGGGGGACACAATATCTTCAACCTCGCTGGGCAAC
TGGATGTGCTCCAGGCAAGCCTCTGCTTCATGGTGCTGATTGGGGTGACA
GTGGTGTTTGAGTTCATTGTTGAAAAGCTGGAGGAGGCACTGCATGAGGC
AGAGCACTATCGGGCAATGCTTGATAAGGTCTTCAAGGAGCTCGCATTGC
TGGGTCTCATATCCTTCATAGTGTTTGTATTTGAGACCACCGGTGCCTTG
CAAGCAGTCGGAGGGGACTCGTGGCTGCTTTCATTCGAATACGCCCACAT
TCTCCTATTCTTCGTGGCAATGGCTTATGTGCTCCAAGCTTTGATGCTTA
TGCTGTTAGTGGTTAGGAGTGATAAGTTCTGGAAACATGTCGATGACCTG
ACAGCAACCACGCTACTGAAGAAATATAGAGTCAAGGTTCGCTGA
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