mRNA_C-australica_Contig_1020.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1020.1.1 vs. uniprot
Match: A0A7S1TPK6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPK6_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 2.050e-16 Identity = 49/112 (43.75%), Postives = 74/112 (66.07%), Query Frame = 1 Query: 64 EGGHNIFNLAGQLDVLQASLCFMVLIGVTVVFEFIVEKLEEALHEAEHYRAMLDKVFKELALLGLISFIVFVFETTGALQAVGGDSWLLSFEYAHILLFFVAMAYVLQALML 399 +G H++F + ++ + SLCFM L+G TV+FE LE L + HY M++K++KEL +LGLISF +F+ T +L S+ L+FEYAH+L+FFVA+ VLQ++ L Sbjct: 18 DGHHSVFGMGADMEAFKVSLCFMGLVGFTVLFEMFTSYLEMKL-QGTHYMEMVNKIYKELMILGLISFGLFMGVQTVSLDQ---SSYFLAFEYAHVLIFFVAIFLVLQSIAL 125
BLAST of mRNA_C-australica_Contig_1020.1.1 vs. uniprot
Match: A0A7S3XNG9_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNG9_HETAK) HSP 1 Score: 83.2 bits (204), Expect = 9.000e-16 Identity = 48/144 (33.33%), Postives = 87/144 (60.42%), Query Frame = 1 Query: 64 EGGHNIFNLAGQLDVLQASLCFMVLIGVTVVFEFIVEKLEEALHEAEHYRAMLDKVFKELALLGLISFIVFVFETTGALQAVGGDSWLLSFEYAHILLFFVAMAYVLQALMLMLLVVRSDKFWK-----HVDDLTATTLLKKYR 480 E ++FNL +++ +A CF++L+ T++ E E +E L H+ +++KV+KE+ +LGLISF++F E L + SW++SFE+AHIL+FFV +++ L ++++ +LV R + W +++L KK+R Sbjct: 4 EDSSSLFNLKEEINFAEACWCFLILLTATIIIETFTEWIEWVLQGKGHFLVIVNKVYKEVMILGLISFLLFCSEQGPLLDDLD-HSWIISFEFAHILIFFVGVSFCLFSIIICVLVSRGRRSWDAYERYDIEELMGYFAGKKHR 146
BLAST of mRNA_C-australica_Contig_1020.1.1 vs. uniprot
Match: A0A7S3XMC8_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMC8_HETAK) HSP 1 Score: 71.2 bits (173), Expect = 3.910e-12 Identity = 42/104 (40.38%), Postives = 67/104 (64.42%), Query Frame = 1 Query: 178 LEEALHEAEHYRAMLDKVFKELALLGLISFIVFVFETTGALQAVGGDSWLLSFEYAHILLFFVAMAYVLQALMLMLLVVRSDKFWK-----HVDDLTATTLLKK 474 +E ALH EH+ +++KV+KEL +LGLISF++F E L + SW++SFE+AHILLFF+ +++ L ++++ +LV R + W + +LTA KK Sbjct: 2 IEWALHGKEHFLVIVNKVYKELMILGLISFLLFCSEQGPLLDDLD-HSWIISFEFAHILLFFIGISFCLLSVVVCVLVSRGRRSWDAYERYDIQELTAYFAAKK 104
BLAST of mRNA_C-australica_Contig_1020.1.1 vs. uniprot
Match: A0A7S2RPQ5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RPQ5_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 2.840e-11 Identity = 42/109 (38.53%), Postives = 67/109 (61.47%), Query Frame = 1 Query: 61 HEGGHNIFNLAGQLDVLQASLCFMVLIGVTVVFEFIVEKLEEALHEAEHYRAMLDKVFKELALLGLISFIVFVFETTGALQAVGGDSWLLSFEYAHILLFFVAMAYVLQ 387 H H +F L CFM++IG+T++ E +E LEE + Y ++L K++KEL LLGLISF +F+ T +L+A D+W ++FE+AH ++FFV + ++Q Sbjct: 48 HGSAHTLFELVFLAKSDLVMYCFMMIIGITILAEICLEFLEERVSTT--YHSVLQKMYKELMLLGLISFAIFIL--TSSLEA-DLDNWFIAFEFAHFVMFFVGVMLIMQ 151
BLAST of mRNA_C-australica_Contig_1020.1.1 vs. uniprot
Match: A0A7S2RPR7_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RPR7_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 3.190e-11 Identity = 42/109 (38.53%), Postives = 67/109 (61.47%), Query Frame = 1 Query: 61 HEGGHNIFNLAGQLDVLQASLCFMVLIGVTVVFEFIVEKLEEALHEAEHYRAMLDKVFKELALLGLISFIVFVFETTGALQAVGGDSWLLSFEYAHILLFFVAMAYVLQ 387 H H +F L CFM++IG+T++ E +E LEE + Y ++L K++KEL LLGLISF +F+ T +L+A D+W ++FE+AH ++FFV + ++Q Sbjct: 48 HGSAHTLFELVFLAKSDLVMYCFMMIIGITILAEICLEFLEERVSTT--YHSVLQKMYKELMLLGLISFAIFIL--TSSLEA-DLDNWFIAFEFAHFVMFFVGVMLIMQ 151
BLAST of mRNA_C-australica_Contig_1020.1.1 vs. uniprot
Match: A0A3F2RLP5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RLP5_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 1.420e-9 Identity = 40/129 (31.01%), Postives = 73/129 (56.59%), Query Frame = 1 Query: 70 GHNIFNLAGQLDVLQASLCFMVLIGVTVVFEFIVEKLEEALHEAEHYRAMLDKVFKELALLGLISFIVFVFETTGALQAVGGDSWLLSFEYAHILLFFVAMAYVLQALMLMLLVVRSDKFWKHVDDLTA 456 G ++F + +++ Q + L +VFE + LE L + Y+ ML KV++EL +LGL+SFIV + G L G LL+F+ A +++F +A+ ++QA++++LL+ R ++ D +T Sbjct: 3 GGSVFQVGEDVELFQVVVLLSALAMCLLVFETALHHLEHHLSRYDKYQHMLKKVYRELMILGLLSFIVKMLTEVGGLDGYSGT--LLAFQVADLIIFILALVLIIQAILVLLLLRRRNRLSDRADLITT 129
BLAST of mRNA_C-australica_Contig_1020.1.1 vs. uniprot
Match: A0A7S3UM22_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UM22_HETAK) HSP 1 Score: 62.0 bits (149), Expect = 1.520e-9 Identity = 38/106 (35.85%), Postives = 62/106 (58.49%), Query Frame = 1 Query: 76 NIFNLAGQLDVLQASLCFMVLIGVTVVFEFIVEKLEEALHEAEHYRAMLDKVFKELALLGLISFIVFVFETTGALQAVGGDSWLLSFEYAHILLFFVAMAYVLQAL 393 ++F L L+ + C + +I T++FE + ++E L + Y ML KV+KE+ ++G ISF +F+ G VG L++FE+AHI +FF A+ +VL AL Sbjct: 5 SVFGLGASLNTALTTYCLIGIILFTIIFEAVTHRVEHKL-QGTPYMEMLAKVYKEMMIMGFISFGIFMAVQAGG---VGHGDTLVAFEFAHIEVFFTALLFVLSAL 106
BLAST of mRNA_C-australica_Contig_1020.1.1 vs. uniprot
Match: A0A836CJ86_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ86_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.300e-7 Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 1 Query: 76 NIFNLAGQLDVLQASLCFMVLIGVTVVFEFIVEKLEEALHEAEHYRAMLDKVFKELALLGLISFIVFVFETTGALQAVGGDSWLLSFEYAHILLFFVAMAYVLQALMLM 402 N+F LA LD+ +SL + ++G TV+FE I KLE L E +R ML+K++KEL ++GL+S V + E +G L V G ++ SFE A+ +VLQA M+M Sbjct: 3 NVFGLASHLDIAISSLALVGVVGFTVIFEHISSKLEHRL-EGTPFREMLNKIYKELMIIGLVSLGVTILENSGNL--VHGTAFY-SFE---------AIFFVLQASMVM 98
BLAST of mRNA_C-australica_Contig_1020.1.1 vs. uniprot
Match: A0A482SVL1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SVL1_9ARCH) HSP 1 Score: 60.1 bits (144), Expect = 1.340e-7 Identity = 39/138 (28.26%), Postives = 69/138 (50.00%), Query Frame = 1 Query: 82 FNLAGQLDVLQASLCFMVLIGVTVVFEFIVEKLEEALHEAEHYRAMLDKVFKELALLGLISFIVFVFET----TGALQAVGGDSWLLSFEYAHILLFFVAMAYVLQALMLMLLVVRSDKFWKHVDDLTATTLLKKYRV 483 F LD + CF+++I V F+ + +E L + Y M+ ++KEL L+G++SFI+ + + A G W+L +YAHI+LFF+ + +VL AL M + S+ ++ ++K+ V Sbjct: 6 FGEISYLDPTKTLFCFIMVICFVVAFDVTIGVMEYYLEGSPIYNRMVQTIYKELMLMGVVSFIIIMVRAGRLASNYATAESGAEWVLGIDYAHIVLFFLTVFFVLHALYFMKKSLSSNATYRRKYTKEVAAMIKELDV 143
BLAST of mRNA_C-australica_Contig_1020.1.1 vs. uniprot
Match: G4YWY0_PHYSP (EF-hand domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YWY0_PHYSP) HSP 1 Score: 58.9 bits (141), Expect = 4.050e-7 Identity = 38/133 (28.57%), Postives = 74/133 (55.64%), Query Frame = 1 Query: 70 GHNIFNLAGQLDVLQASLCFMVLIGVTVVFEFIVEKLEEALHEAEHYRAMLDKVFKELALLGLISFIVFVFETTGALQAVGGDSWLLSFEYAHILLFFVAMAYVLQALMLMLLVVRSDKFWKHVDDLTATTLL 468 G ++F + +++ + + L +VFE + LE L + Y+ ML KV++EL +LGL+SFI+ + G + G +L+F+ A +++F +A+A VLQA+ +++L+ +K + +T L+ Sbjct: 3 GGSVFRVGEDVELFRVLVLLSALATCLLVFEAALHHLEHHLARHDKYQHMLKKVYRELMILGLLSFIIKMLTEVGGIDGYSGT--MLAFQVADLIIFILAIALVLQAIWVLVLLRGHNKRIDRAELITTQDLV 133 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1020.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1020.1.1 >prot_C-australica_Contig_1020.1.1 ID=prot_C-australica_Contig_1020.1.1|Name=mRNA_C-australica_Contig_1020.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=165bp MGGIEDVDGHGEAPTGHDEHHEGGHNIFNLAGQLDVLQASLCFMVLIGVTback to top mRNA from alignment at C-australica_Contig_1020:100..824- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1020.1.1 ID=mRNA_C-australica_Contig_1020.1.1|Name=mRNA_C-australica_Contig_1020.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=725bp|location=Sequence derived from alignment at C-australica_Contig_1020:100..824- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1020:100..824- >mRNA_C-australica_Contig_1020.1.1 ID=mRNA_C-australica_Contig_1020.1.1|Name=mRNA_C-australica_Contig_1020.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=495bp|location=Sequence derived from alignment at C-australica_Contig_1020:100..824- (Chrysoparadoxa australica CS_1217)back to top |