mRNA_C-australica_Contig_102.2.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_102.2.1 vs. uniprot
Match: A0A6H5K3J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J5_9PHAE) HSP 1 Score: 221 bits (562), Expect = 1.550e-60 Identity = 146/287 (50.87%), Postives = 180/287 (62.72%), Query Frame = 1 Query: 64 GLLKAFKAHEYVAHSTLVNCVVIGPRSGAVLATGGEDKRVNVWKVGRASNIWSLTGNSSPIEALAFDPMEELLVSGSSGGAVKLYDLQVGKLRRNFRGHMSNVTAIEYGAFDRKFMTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSPDGFLLASASGNGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVESLEFFCASPPDSSPVVSLGFSSNGSEVYAASHSSLRCITWDNDTAVAQVERSGEMSWG--GVQAMHITAEKQ 918 G FKAHE+VAH+ NCV +GPRSG VLATGG+DKRVNVW++GRAS+IWSLTGNSS IE+L FDP EE LVSGS+GGAVKL+DL GK+ R+FRGHMSNVT I+ G+FDR+F+TT FSPDG +LASA+ +G+ XXXXXXXXXXXXXXXXXXXXXX E +E FC + PD+ P ++ F +G ++Y AS S LR +WDN A AQ+E G++ WG G A+H A+ Q Sbjct: 10 GSFAGFKAHEFVAHAGKTNCVAVGPRSGQVLATGGDDKRVNVWRIGRASSIWSLTGNSSGIESLRFDPTEEFLVSGSAGGAVKLFDLSAGKMTRHFRGHMSNVTVIDCGSFDRRFVTTGSMDCQVTDVQ---------------------FSPDGHILASAAADGQVKLWDLRAGKPMHTFQACSGAVRAIXXXXXXXXXXXXXXXXXXXXXXXEFMELFCPTAPDTCPTRAITFDPDGQKMYCASPSGLRRWSWDNHIASAQLEAMGDVPWGKVGAGALHYNADGQ 275
BLAST of mRNA_C-australica_Contig_102.2.1 vs. uniprot
Match: D8LQ17_ECTSI (Katanin p80 WD40 repeat-containing subunit B1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ17_ECTSI) HSP 1 Score: 221 bits (562), Expect = 1.730e-60 Identity = 198/287 (68.99%), Postives = 231/287 (80.49%), Query Frame = 1 Query: 64 GLLKAFKAHEYVAHSTLVNCVVIGPRSGAVLATGGEDKRVNVWKVGRASNIWSLTGNSSPIEALAFDPMEELLVSGSSGGAVKLYDLQVGKLRRNFRGHMSNVTAIEYGAFDRKFMTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSPDGFLLASASGNGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVESLEFFCASPPDSSPVVSLGFSSNGSEVYAASHSSLRCITWDNDTAVAQVERSGEMSWG--GVQAMHITAEKQ 918 G AFKAHE+VAH+ NCV +GPRSG VLATGG+DKRVNVW++GRAS+IWSLTGNSS IE+L FDP EE LVSGS+GGAVKL+DL GK+ R+FRGHMSNVT I+ G+FDR+F+ XXXXXXXXXXXXXXXXXXXXXXXXXXXX FSPDG +LASA+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E +E FC + PD+ P ++ F +G ++Y AS S LR +WDNDTA A++E G++ WG G A+H A+ Q Sbjct: 10 GSFAAFKAHEFVAHAGKTNCVAVGPRSGQVLATGGDDKRVNVWRIGRASSIWSLTGNSSAIESLRFDPTEEFLVSGSAGGAVKLFDLSAGKMTRHFRGHMSNVTVIDCGSFDRRFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDVQFSPDGHILASAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFMELFCPTAPDTCPTRAITFDPDGQKMYCASPSGLRRWSWDNDTASARLEAMGDVPWGKVGAGALHYNADGQ 296
BLAST of mRNA_C-australica_Contig_102.2.1 vs. uniprot
Match: A0A836CLK5_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLK5_9STRA) HSP 1 Score: 197 bits (500), Expect = 1.710e-53 Identity = 141/307 (45.93%), Postives = 167/307 (54.40%), Query Frame = 1 Query: 79 FKAHEYVAHSTLVNCVVIGPRSGAVLATGGEDKRVNVWKVGRASNIWSLTGNSSPIEALAFDPMEELLVSGSSGGAVKLYDLQVGKLRRNFRGHMSNVTAIEYGAFDRKFMTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSPDGFLLASASGNGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV------ESLEFFCASPPDSSPVVSLGFSSNGSEVYAASHSSLRCITWDNDTAVAQVERSGEMSWGGVQAMHITAEKQVVAASCASNFVTVWAVDLDDA 981 FKAHE+VAHST VNCV IGP GAVLATGGEDKRVNVWK+GRA++IWSL GNSSPIE + FD EE L SGSSGGAVK YDL VGK+ RNFRGHMSNVTA+ GAFD ++ T FSPDGFLLAS + +G+ XXXXXXXXXXXXXXXXX E +E FCA+ P+SS ++ F++ G+ +A+H E QVVAA+ SNFV++WA D+DDA Sbjct: 13 FKAHEFVAHSTKVNCVAIGPH-GAVLATGGEDKRVNVWKIGRANHIWSLAGNSSPIECVCFDHAEENLYSGSSGGAVKQYDLTVGKMARNFRGHMSNVTALHSGAFDSAYLATGALDCVVKVWNTATKECVMAFKGHGAEVCEVQFSPDGFLLASGARDGDVRIWDVRAGKLLHAFAACGGGSGGGSGVRAXXXXXXXXXXXXXXXXXXXXXXXXEEMELFCATSPESSQFHAMAFNAEGN-----------------------------------RALHYNPEGQVVAATSTSNFVSIWAFDVDDA 283
BLAST of mRNA_C-australica_Contig_102.2.1 vs. uniprot
Match: A0A482STH4_9ARCH (Katanin_con80 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482STH4_9ARCH) HSP 1 Score: 121 bits (304), Expect = 3.270e-26 Identity = 55/105 (52.38%), Postives = 75/105 (71.43%), Query Frame = 1 Query: 73 KAFKAHEYVAHSTLVNCVVIGPRSGAVLATGGEDKRVNVWKVGRASNIWSLTGNSSPIEALAFDPMEELLVSGSSGGAVKLYDLQVGKLRRNFRGHMSNVTAIEY 387 ++ + E+VAHST VNC+ +G +S VLATGGED +VN+W+VG SNIW+L N SPIE L FD E +VSG+ G++K++DL GKL RN H NVT+++Y Sbjct: 8 ESVRVQEFVAHSTQVNCLALGSKSSQVLATGGEDAKVNIWRVGSVSNIWTLGQNKSPIECLCFDADELCVVSGAMNGSLKVFDLNEGKLARNLGSHQVNVTSVQY 112
BLAST of mRNA_C-australica_Contig_102.2.1 vs. uniprot
Match: F0YMU1_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMU1_AURAN) HSP 1 Score: 112 bits (279), Expect = 6.010e-25 Identity = 56/103 (54.37%), Postives = 68/103 (66.02%), Query Frame = 1 Query: 76 AFKAHEYVAHSTLVNCVVIGPRSGAVLATGGEDKRVNVWKVGR----ASNIWSLTGNSSPIEALAFDPMEELLVSGSSGGAVKLYDLQVGKLRRNFRGHMSNV 372 A K HE+VA +V CV +GPRS VLA+GGEDKR NVW++ A N+WSL GNSSPI L FD E LVSG+ GG+V+LYDL G+ R GH + V Sbjct: 3 AAKLHEWVASPAVVTCVALGPRSHQVLASGGEDKRANVWRLRPGDPGAQNVWSLGGNSSPISCLCFDDAENTLVSGAQGGSVRLYDLTEGRCARALNGHRNEV 105
BLAST of mRNA_C-australica_Contig_102.2.1 vs. uniprot
Match: A0A1D1UXW2_RAMVA (Katanin p80 WD40 repeat-containing subunit B1 n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1UXW2_RAMVA) HSP 1 Score: 115 bits (289), Expect = 2.680e-24 Identity = 88/301 (29.24%), Postives = 130/301 (43.19%), Query Frame = 1 Query: 73 KAFKAHEYVAHSTLVNCVVIGPRSGAVLATGGEDKRVNVWKVGRASNIWSLTGNSSPIEALAFDPMEELLVSGSSGGAVKLYDLQVGKLRRNFRGHMSNVTAIEYGAFDRKFMTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSPDGFLLASASGNGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVESLEFFCASPPDSSPVVSLGFSSNGSEVYAASHSSLRCITWDNDTAVAQVERSGEMSWGGVQAMHIT-AEKQVVAASCASNFVTVWAVDL 972 K K E AHS+ V CV +G +G VLATGG D VN+W +G+ + + SL G SS E + FDP EE + +GSS GA+K++D++ K++RN GH + VTA+++ +FD FM + XXXXX FSP G + S +G +E+ E ++ DSSPV + F +GS + A L+ W+ + + WG V M ++ + Q+V AS V + VDL Sbjct: 6 KITKIQELEAHSSAVTCVALGQLNGRVLATGGADCFVNLWVLGQKTALKSLPGLSSAAECVRFDPTEESVAAGSSSGALKIWDIEADKIKRNLTGHKTGVTALDFLSFDPNFMVSGSADCTXXXXXLRRKTCVVSYKGHQDTVREVLFSPHGKWITSGGIDGTIQIYQWQAGKSLKELIHAKAAVYSLAFHPKDLLLASTGQDGVVKFWDLETFEVVSSTEKDSSPVRCIRFQKDGSSLLAGCDDMLKVFGWEPAVCHDVIP----VGWGRVADMAVSGSSSQLVTASAGKTSVATYLVDL 302
BLAST of mRNA_C-australica_Contig_102.2.1 vs. uniprot
Match: A0A1B6FE44_9HEMI (Uncharacterized protein (Fragment) n=2 Tax=Cicadellinae TaxID=33370 RepID=A0A1B6FE44_9HEMI) HSP 1 Score: 105 bits (261), Expect = 5.770e-24 Identity = 46/102 (45.10%), Postives = 71/102 (69.61%), Query Frame = 1 Query: 73 KAFKAHEYVAHSTLVNCVVIGPRSGAVLATGGEDKRVNVWKVGRASNIWSLTGNSSPIEALAFDPMEELLVSGSSGGAVKLYDLQVGKLRRNFRGHMSNVTA 378 + +K E+ AHS VNC+ +G +SG VL TGG+DK+VN+W +G+ + I SL G+ +P+E + F+ EEL+ +GSSGG +K++DL+ K+ R GH S + A Sbjct: 7 RLWKVQEFKAHSANVNCLALGQKSGRVLVTGGDDKKVNLWAIGKNNCIMSLNGHITPVETVRFNHTEELVAAGSSGGVLKIWDLEATKIMRTLTGHRSGLRA 108
BLAST of mRNA_C-australica_Contig_102.2.1 vs. uniprot
Match: A0A7S2CHB8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2CHB8_9DINO) HSP 1 Score: 105 bits (262), Expect = 1.610e-23 Identity = 45/105 (42.86%), Postives = 74/105 (70.48%), Query Frame = 1 Query: 73 KAFKAHEYVAHSTLVNCVVIGPRSGAVLATGGEDKRVNVWKVGRASNIWSLTGNSSPIEALAFDPMEELLVSGSSGGAVKLYDLQVGKLRRNFRGHMSNVTAIEY 387 + +K EY AH+ C +G +SG VLATGGED+RVN+WKVG+++ + SLTG++S +E L FD EE+LV G +GG++++++L+ K+ GH + +++E+ Sbjct: 43 RVWKLQEYTAHAGCTRCARLGEKSGQVLATGGEDRRVNIWKVGKSNAMMSLTGHNSTVECLVFDKQEEVLVVGCAGGSMQVWNLEYRKMAGTLTGHRTGCSSVEF 147
BLAST of mRNA_C-australica_Contig_102.2.1 vs. uniprot
Match: A0A3B4BK80_9GOBI (Katanin p80 (WD repeat containing) subunit B 1 n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B4BK80_9GOBI) HSP 1 Score: 105 bits (261), Expect = 1.620e-22 Identity = 57/153 (37.25%), Postives = 83/153 (54.25%), Query Frame = 1 Query: 91 EYVAHSTLVNCVVIGPRSGAVLATGGEDKRVNVWKVGRASNIWSLTGNSSPIEALAFDPMEELLVSGSSGGAVKLYDLQVGKLRRNFRGHMSNVTAIEYGAFDRKFMTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSPDGFLLASAS 549 E+ AH++ V+C+ +G SG +LATGGED RVN+W V +A+ I SLTG+ SP+E L + EE +V+GS G++K++DL+ KLR GH +N+T++ F+ + FSPDG LASAS Sbjct: 14 EFEAHTSRVSCLSLGKSSGRLLATGGEDCRVNIWAVSKANCIMSLTGSKSPVECLQLNASEEQVVAGSQSGSIKIWDLEAAKLR-TLMGHKANITSLGCHPLSENFLASSSMDTNIKLWDVRRKGYILRYQGHTDAVRSLAFSPDGKWLASAS 165
BLAST of mRNA_C-australica_Contig_102.2.1 vs. uniprot
Match: A0A383W973_TETOB (Katanin p80 WD40 repeat-containing subunit B1 homolog n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W973_TETOB) HSP 1 Score: 110 bits (274), Expect = 2.400e-22 Identity = 50/116 (43.10%), Postives = 78/116 (67.24%), Query Frame = 1 Query: 70 LKAFKAHEYVAHSTLVNCVVIGPRSGAVLATGGEDKRVNVWKVGRASNIWSLTGNSSPIEALAFDPMEELLVSGSSGGAVKLYDLQVGKLRRNFRGHMSNVTAIEYGAFDRKFMTT 417 ++++K E+VAHS VNC+ IG + VLATGGEDK+VN+W++G+ I +L G +SP+E + FDP E+ + +G++ G VK++DL GK+ + GH SN IE+G + + T Sbjct: 1 MRSYKLDEFVAHSGAVNCLRIGRNTAGVLATGGEDKKVNLWRIGQPHVIQTLVGLNSPVECVTFDPAEDKVGAGAANGTVKVWDLDTGKVCCSLTGHRSNCLTIEFGPPESNIVVT 116 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_102.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_102.2.1 >prot_C-australica_Contig_102.2.1 ID=prot_C-australica_Contig_102.2.1|Name=mRNA_C-australica_Contig_102.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=404bp PSPPHLAPCPPIPMLGIYQQQGLLKAFKAHEYVAHSTLVNCVVIGPRSGAback to top mRNA from alignment at C-australica_Contig_102:1919..5063+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_102.2.1 ID=mRNA_C-australica_Contig_102.2.1|Name=mRNA_C-australica_Contig_102.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3145bp|location=Sequence derived from alignment at C-australica_Contig_102:1919..5063+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_102:1919..5063+ >mRNA_C-australica_Contig_102.2.1 ID=mRNA_C-australica_Contig_102.2.1|Name=mRNA_C-australica_Contig_102.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1212bp|location=Sequence derived from alignment at C-australica_Contig_102:1919..5063+ (Chrysoparadoxa australica CS_1217)back to top |