mRNA_C-australica_Contig_10193.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10193.1.1
Unique NamemRNA_C-australica_Contig_10193.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10193.1.1 vs. uniprot
Match: A0A7G8ZLN3_9PROT (Tryptophan 7-halogenase n=1 Tax=Hyphobacterium sp. CCMP332 TaxID=2749086 RepID=A0A7G8ZLN3_9PROT)

HSP 1 Score: 196 bits (498), Expect = 2.000e-57
Identity = 101/184 (54.89%), Postives = 121/184 (65.76%), Query Frame = 1
Query:    1 MTQTQNSIAIIGRGLAGNLAALALSKSLGADWRILQLGTSDGPLEDSFYGSVTAPTAYNFLRSVGLEEPRLLLGSATTFSLGSHFKHWVGGASWMQCHHSPLPTLATAPLRHQLTRLKLDLEPLLVSAQVAKAGRFAHPPEDPNTILSRAEYGYQFDPMEWAALLDHDVADSTVERIESEVRSI 552
            M     +IA+ G GLAGN+ A  L   LGADW+I QL  S  P  D  YG+ + P +YNFL  +GL EP L L SAT+FS G+HF +W+   SWMQCHH+P  TL   P RH + R    LEPLL+SA+ A AGRFAHPP+DP  ILSRAEYGYQFD  EWAALL+  V  S V R  S +RS+
Sbjct:    1 MRSLTKNIAVCGGGLAGNMVATRLVAGLGADWKIFQLCDSMPPQHDIAYGNTSDPDSYNFLLDLGLNEPTLFLKSATSFSFGTHFSNWLN-RSWMQCHHTPFQTLRGIPFRHFVARSNTSLEPLLISARAAIAGRFAHPPKDPAIILSRAEYGYQFDVREWAALLEQKVLASRVIRKSSPIRSV 183          
BLAST of mRNA_C-australica_Contig_10193.1.1 vs. uniprot
Match: A0A148KN80_9ALTE (Uncharacterized protein n=1 Tax=Paraglaciecola hydrolytica TaxID=1799789 RepID=A0A148KN80_9ALTE)

HSP 1 Score: 138 bits (347), Expect = 2.930e-35
Identity = 76/177 (42.94%), Postives = 100/177 (56.50%), Query Frame = 1
Query:   28 IIGRGLAGNLAALALSKSLGADWRILQLGTSDGPLEDSFYGSVTAPTAYNFLRSVGLEEPRLLLGSATTFSLGSHFKHWVGGA-SWMQCHHSPLPTLATAPLRHQLTRLKLDLEPLLVSAQVAKAGRFAHPPED-PNTILSRAEYGYQFDPMEWAALLDHDVADSTVERIESEVRSI 552
            + G  LA ++  LALSK+L     +L +        D  YG +++P AY+F    G+ EP L+L + TTFS G+HFKHW     SWMQC H P    A   L H +TR K  L   L+SAQ A  G FAHPP D P + LSRAEYGY FDP +W+ +    +  + V  IE E+ S+
Sbjct:   11 VYGNTLAASMTVLALSKALPKHITLLWVKPMSPCPSDVLYGGLSSPDAYHFNLQYGVTEPELILDTDTTFSFGTHFKHWGDDKRSWMQCFHLPFAATAGVELHHFMTRHKTILGDFLISAQAAIKGTFAHPPVDNPQSPLSRAEYGYHFDPAQWSGIFSKHLDKTRVTLIEQEISSL 187          
BLAST of mRNA_C-australica_Contig_10193.1.1 vs. uniprot
Match: UPI001C875A19 (tryptophan 7-halogenase n=1 Tax=Qipengyuania sphaerica TaxID=2867243 RepID=UPI001C875A19)

HSP 1 Score: 137 bits (345), Expect = 5.980e-35
Identity = 77/177 (43.50%), Postives = 96/177 (54.24%), Query Frame = 1
Query:   22 IAIIGRGLAGNLAALALSKSLGADWRILQLGTSDGPLEDSFYGSVTAPTAYNFLRSVGLEEPRLLLGSATTFSLGSHFKHWVGGASWMQCHHSPLPTLATAPLRHQLTRLKLDLEPLLVSAQVAKAGRFAHPPEDPNTILSRAEYGYQFDPMEWAALLDHDVADSTVERIESEVRSI 552
            IAI G GLA      AL+++L    RI  L        D  YG+VT PTA++     G++EP LLL + ++F  G+ +  W G   W Q +H PLP          L  L+  LEP LVSA   +AGRFAHPP DPN  LSRAEYGYQ DP++ A LL        V RI  E+ SI
Sbjct:    9 IAICGSGLAFEACLAALARNLDPGIRITALELEQEQSFDPLYGTVTPPTAFDDFTLWGIDEPELLLRTGSSFCYGTFYSDWAGRLGWTQAYHLPLPVWDGIEFHFYLAHLQASLEPHLVSAVCGRAGRFAHPPADPNIPLSRAEYGYQIDPLDLADLLARKDLPGNVTRIRGEIASI 185          
BLAST of mRNA_C-australica_Contig_10193.1.1 vs. uniprot
Match: UPI001B0FC86C (Tryptophan 7-halogenase n=1 Tax=Sphingomonas sp. TaxID=28214 RepID=UPI001B0FC86C)

HSP 1 Score: 135 bits (341), Expect = 2.470e-34
Identity = 75/182 (41.21%), Postives = 101/182 (55.49%), Query Frame = 1
Query:   22 IAIIGRGLAGNLAALALSKSLGADWRILQLGTSDGPLEDSFYGSVTAPTAYNFLRSVGLEEPRLLLGSATTFSLGSHFKHWVGGA-SWMQCHHSPLPTLATAPLRHQLTRL-KLDLEPLLVSAQVAKAGRFAHPPEDPNT---ILSRAEYGYQFDPMEWAALLDHDVADSTVERIESEVRSI 552
            + I G GLA  + A A++  L    RI      D    D FYGSV+AP+AY F  + GL+EPRL++     FS G+ +  W GG+ SW+QC H  LP +      H L +  + +LEP LVSA  A+ G FAHPP+ P     +LSRAEYGYQFDP  +A L      D+ V R+   +  +
Sbjct:   14 VVICGTGLAAQMTACAMAAQLPPAIRITLADVGDSAGTDLFYGSVSAPSAYAFNLTTGLQEPRLVVEGDAAFSWGTRYSRWAGGSRSWIQCFHLSLPVIDGVLFHHYLAQQGETELEPYLVSAMAARKGVFAHPPQRPGQTEQLLSRAEYGYQFDPATYARLFQSSTDDARVHRVRGALEEV 195          
BLAST of mRNA_C-australica_Contig_10193.1.1 vs. uniprot
Match: A0A1G4TQ52_9CAUL (Tryptophan halogenase n=1 Tax=Asticcacaulis taihuensis TaxID=260084 RepID=A0A1G4TQ52_9CAUL)

HSP 1 Score: 133 bits (334), Expect = 2.310e-33
Identity = 69/178 (38.76%), Postives = 97/178 (54.49%), Query Frame = 1
Query:   22 IAIIGRGLAGNLAALALSKSLGADWRILQLGTSDGPLEDSFYGSVTAPTAYNFLRSVGLEEPRLLLGSATTFSLGSHFKHWVGGASWMQCHHSPLPTLATAPLRHQLTRLKL-DLEPLLVSAQVAKAGRFAHPPEDPNTILSRAEYGYQFDPMEWAALLDHDVADSTVERIESEVRSI 552
            I + G GLA  +   AL++ L    ++  L  +     D FYG+   P  Y F  ++G+ EP LL GS  +FS G+ +++W GGA+W QC   PLP +      H L++  + +LEP LVSA  A+ G FAHPPED    LSRAEYGY  DP++W    +  V    V+    E+  I
Sbjct:   13 IVVCGNGLAAQMTVCALARQLPDQIQLTWLRIAGSEQSDIFYGNTAPPATYEFNLNLGISEPELLSGSEASFSFGTRYQNW-GGAAWTQCFQQPLPIIDGVLFHHYLSQQNIFELEPFLVSAVAAQKGAFAHPPEDRRHALSRAEYGYHIDPLDWGRFFERMVPRDRVDIAAGEIADI 189          
BLAST of mRNA_C-australica_Contig_10193.1.1 vs. uniprot
Match: UPI001A989C10 (Tryptophan 7-halogenase n=2 Tax=Alteromonas sp. 5E99-2 TaxID=2817683 RepID=UPI001A989C10)

HSP 1 Score: 132 bits (331), Expect = 4.740e-33
Identity = 74/179 (41.34%), Postives = 97/179 (54.19%), Query Frame = 1
Query:   22 IAIIGRGLAGNLAALALSKSLGADWRILQLGTSDGPLEDSFYGSVTAPTAYNFLRSVGLEEPRLLLGSATTFSLGSHFKHWVGGA-SWMQCHHSPLPTLATAPLRHQLTRLKLDLEPLLVSAQVAKAGRFAHPPED-PNTILSRAEYGYQFDPMEWAALLDHDVADSTVERIESEVRSI 552
            + ++G   A +   +AL   L + + I+ +  +     D  YGS+T+P AY F  +V   EP LLL + T+FS G+ F  W      WMQC H P    A     H +TR   +L   L+SAQ AK GRFAHPP D PN+ LSRAEYGY FDP+EW+ L         V  IES V S+
Sbjct:    8 LVVVGNSFAASQCVVALLNELPSSFEIVWVRPTGKAKSDEMYGSITSPEAYKFNINVNCTEPDLLLKTGTSFSFGTGFVEWGQQKHQWMQCFHLPFHAEAGVYFHHFMTRHNANLSDYLISAQAAKLGRFAHPPSDNPNSALSRAEYGYHFDPLEWSELFYGYATRQDVNIIESAVTSV 186          
BLAST of mRNA_C-australica_Contig_10193.1.1 vs. uniprot
Match: UPI0003627E65 (tryptophan 7-halogenase n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI0003627E65)

HSP 1 Score: 131 bits (329), Expect = 1.250e-32
Identity = 72/153 (47.06%), Postives = 92/153 (60.13%), Query Frame = 1
Query:   22 IAIIGRGLAGNLAALALSKSLGADWRILQLGTSDGPLEDSFYGSVTAPTAYNFLRSVGLEEPRLLLGSATTFSLGSHFKHWVG-GASWMQCHHSPLPTLATAPLRHQLTRLKLD-LEPLLVSAQVAKAGRFAHPPEDPNTILSRAEYGYQFDP 474
            IAIIG GLAG + A AL  +L +   I  L T      D FYG  T P +Y F  +  + EP L+L S T+FSLG+ F  W      W+QC H PLP + + P  H L RL +D +EP L+ + +A+ GRFAHPP + +T LSRAEYGYQ DP
Sbjct:   15 IAIIGAGLAGQICAAALRANLPSAIDIKWLDTGRDQDSDIFYGHTTPPESYGFNLAACVNEPDLVLNSDTSFSLGTQFTAWSPQNLEWVQCSHLPLPVMDSVPFHHHLARLDIDNIEPFLMPSIMARNGRFAHPPPNTDTPLSRAEYGYQIDP 167          
BLAST of mRNA_C-australica_Contig_10193.1.1 vs. uniprot
Match: A0A520IEK4_SPHSX (Tryptophan halogenase (Fragment) n=1 Tax=Sphingomonas sp. TaxID=28214 RepID=A0A520IEK4_SPHSX)

HSP 1 Score: 129 bits (323), Expect = 4.750e-32
Identity = 75/171 (43.86%), Postives = 95/171 (55.56%), Query Frame = 1
Query:   22 IAIIGRGLAGNLAALALSKSLGADWRILQLGTSDGPLEDSFYGSVTAPTAYNFLRSVGLEEPRLLLGSATTFSLGSHFKHWVGGA-SWMQCHHSPLPTLATAPLRHQLTRLKLD-LEPLLVSAQVAKAGRFAHPPEDPNTI----LSRAEYGYQFDPMEWAALLDHDVADS 516
            I + G GLA  +   +L++ L    RI  +        D FYG+VTAP+AY F  + G+ EP L L S T FS G+ + HW GG  SW QC   P P +    L   L  + +D LEP LV+A  AK G FAHPP DP       LSRA+YGYQFDP  +A L +  VAD+
Sbjct:    2 IVVCGGGLAAWMTVASLARQLAPAIRITFVDIGGTAESDLFYGNVTAPSAYAFNLAAGVAEPALTLDSDTAFSWGTRYDHWAGGKRSWTQCFALPFPVVDGVLLHQYLAAVGIDRLEPYLVAAMAAKRGAFAHPPRDPAKAAQHPLSRADYGYQFDPASYARLFETAVADA 172          
BLAST of mRNA_C-australica_Contig_10193.1.1 vs. uniprot
Match: UPI001C0740C3 (tryptophan 7-halogenase n=1 Tax=Paraglaciecola arctica TaxID=1128911 RepID=UPI001C0740C3)

HSP 1 Score: 129 bits (324), Expect = 5.440e-32
Identity = 70/187 (37.43%), Postives = 102/187 (54.55%), Query Frame = 1
Query:    1 MTQTQNS-IAIIGRGLAGNLAALALSKSLGADWRILQLGTSDGPLEDSFYGSVTAPTAYNFLRSVGLEEPRLLLGSATTFSLGSHFKHWVG-GASWMQCHHSPLPTLATAPLRHQLTRLKLDLEPLLVSAQVAKAGRFAHPPEDP-NTILSRAEYGYQFDPMEWAALLDHDVADSTVERIESEVRSI 552
            M+Q  N+   + G  LA ++  LALSK+L  +  +  +  +     D  YG +++P AY F    G+ EP+L+L + +TFS G+HF  W     +WMQC H P    A   L H +TR    L   L+SAQ A  G FAHPP D   + LSRAEYGY FDP++W+A+       + +E I  ++  +
Sbjct:    1 MSQPDNTQFLVFGNSLAASMTVLALSKTLPKNISVKWVKPAASSTSDMLYGGISSPEAYQFNLKYGVTEPQLILETDSTFSFGTHFNEWGNHNRTWMQCFHLPFAATAGVELHHFMTRHGTSLGDFLISAQAAMKGTFAHPPTDNLQSPLSRAEYGYHFDPVQWSAVFYKQTDKTRIEIIHGDITRV 187          
BLAST of mRNA_C-australica_Contig_10193.1.1 vs. uniprot
Match: E8RTX1_ASTEC (Uncharacterized protein n=1 Tax=Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / KCTC 12464 / NCIMB 9791 / VKM B-1370 / CB 48) TaxID=573065 RepID=E8RTX1_ASTEC)

HSP 1 Score: 127 bits (318), Expect = 4.160e-31
Identity = 72/186 (38.71%), Postives = 96/186 (51.61%), Query Frame = 1
Query:    1 MTQTQNSIAIIGRGLAGNLAALALSKSLGADWRILQLGTSDGPLEDSFYGSVTAPTAYNFLRSVGLEEPRLLLGSATTFSLGSHFKHW-VGGASWMQCHHSPLPTLATAPLRHQLTRLK-LDLEPLLVSAQVAKAGRFAHPPEDPNTILSRAEYGYQFDPMEWAALLDHDVADSTVERIESEVRSI 552
            MT     + + G GLAG +AA AL         +  L     P  D FYG +  P AY F     + EP L+L S T  S G+H++ W   G  W+Q  H PLP L   P  H LT+ +   LEP LVSA  A+ G FAHPPE+ N  LSRAEYGY F+  ++    +     + V RIE+ + ++
Sbjct:    1 MTSANLHVVVCGGGLAGQMAAAALGAYACPTLTVTWLSEGKDPDTDLFYGHLAPPDAYRFNLGCRVAEPDLILHSQTGLSFGTHYRLWGAQGLDWVQAFHQPLPVLEGVPFHHYLTQQRQAALEPYLVSALAARRGAFAHPPEERNHPLSRAEYGYHFEAADYGQRFERAALSAGVRRIEAFIAAV 186          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10193.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7G8ZLN3_9PROT2.000e-5754.89Tryptophan 7-halogenase n=1 Tax=Hyphobacterium sp.... [more]
A0A148KN80_9ALTE2.930e-3542.94Uncharacterized protein n=1 Tax=Paraglaciecola hyd... [more]
UPI001C875A195.980e-3543.50tryptophan 7-halogenase n=1 Tax=Qipengyuania sphae... [more]
UPI001B0FC86C2.470e-3441.21Tryptophan 7-halogenase n=1 Tax=Sphingomonas sp. T... [more]
A0A1G4TQ52_9CAUL2.310e-3338.76Tryptophan halogenase n=1 Tax=Asticcacaulis taihue... [more]
UPI001A989C104.740e-3341.34Tryptophan 7-halogenase n=2 Tax=Alteromonas sp. 5E... [more]
UPI0003627E651.250e-3247.06tryptophan 7-halogenase n=1 Tax=Robiginitomaculum ... [more]
A0A520IEK4_SPHSX4.750e-3243.86Tryptophan halogenase (Fragment) n=1 Tax=Sphingomo... [more]
UPI001C0740C35.440e-3237.43tryptophan 7-halogenase n=1 Tax=Paraglaciecola arc... [more]
E8RTX1_ASTEC4.160e-3138.71Uncharacterized protein n=1 Tax=Asticcacaulis exce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10193contigC-australica_Contig_10193:34..588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1121022.ABENE_17210
PFAMsTrp_halogenase
Model size555
Max annot lvl204458|Caulobacterales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.51e-36
EggNOG OGsCOG0644@1|root,COG0644@2|Bacteria,1R41S@1224|Proteobacteria,2TW03@28211|Alphaproteobacteria,2KKAJ@204458|Caulobacterales
DescriptionTryptophan halogenase
Cds size555
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586754.1442475-CDS-C-australica_Contig_10193:33..5881682586754.1442475-CDS-C-australica_Contig_10193:33..588Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10193 34..588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10193.1.1prot_C-australica_Contig_10193.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10193 34..588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10193.1.1

>prot_C-australica_Contig_10193.1.1 ID=prot_C-australica_Contig_10193.1.1|Name=mRNA_C-australica_Contig_10193.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=185bp
MTQTQNSIAIIGRGLAGNLAALALSKSLGADWRILQLGTSDGPLEDSFYG
SVTAPTAYNFLRSVGLEEPRLLLGSATTFSLGSHFKHWVGGASWMQCHHS
PLPTLATAPLRHQLTRLKLDLEPLLVSAQVAKAGRFAHPPEDPNTILSRA
EYGYQFDPMEWAALLDHDVADSTVERIESEVRSI*
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mRNA from alignment at C-australica_Contig_10193:34..588-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10193.1.1 ID=mRNA_C-australica_Contig_10193.1.1|Name=mRNA_C-australica_Contig_10193.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=555bp|location=Sequence derived from alignment at C-australica_Contig_10193:34..588- (Chrysoparadoxa australica CS_1217)
ATGACCCAGACTCAAAACTCCATCGCCATTATTGGACGCGGGCTTGCCGG AAACCTGGCCGCGCTTGCGCTATCGAAAAGCCTTGGCGCTGACTGGCGCA TTCTTCAGCTCGGCACCTCAGATGGCCCTCTTGAAGACAGCTTTTACGGC AGCGTGACTGCGCCGACTGCCTATAACTTCCTGCGCTCGGTTGGCCTGGA AGAACCCCGGCTTCTGCTTGGCAGCGCCACGACCTTTTCGCTGGGGAGCC ATTTCAAACACTGGGTCGGCGGCGCGAGCTGGATGCAGTGCCACCACTCC CCCCTGCCGACGCTGGCAACGGCGCCGCTGCGCCACCAGCTGACCCGTCT CAAGCTTGATCTGGAACCCTTGCTTGTCTCGGCTCAGGTGGCCAAGGCTG GGCGCTTCGCCCATCCGCCTGAAGATCCAAACACCATCCTGTCGCGCGCC GAATATGGCTATCAGTTCGATCCGATGGAGTGGGCGGCCTTGCTCGATCA TGACGTCGCGGACAGCACAGTTGAACGAATCGAGAGCGAAGTCCGATCAA TTTAA
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Coding sequence (CDS) from alignment at C-australica_Contig_10193:34..588-

>mRNA_C-australica_Contig_10193.1.1 ID=mRNA_C-australica_Contig_10193.1.1|Name=mRNA_C-australica_Contig_10193.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=555bp|location=Sequence derived from alignment at C-australica_Contig_10193:34..588- (Chrysoparadoxa australica CS_1217)
ATGACCCAGACTCAAAACTCCATCGCCATTATTGGACGCGGGCTTGCCGG
AAACCTGGCCGCGCTTGCGCTATCGAAAAGCCTTGGCGCTGACTGGCGCA
TTCTTCAGCTCGGCACCTCAGATGGCCCTCTTGAAGACAGCTTTTACGGC
AGCGTGACTGCGCCGACTGCCTATAACTTCCTGCGCTCGGTTGGCCTGGA
AGAACCCCGGCTTCTGCTTGGCAGCGCCACGACCTTTTCGCTGGGGAGCC
ATTTCAAACACTGGGTCGGCGGCGCGAGCTGGATGCAGTGCCACCACTCC
CCCCTGCCGACGCTGGCAACGGCGCCGCTGCGCCACCAGCTGACCCGTCT
CAAGCTTGATCTGGAACCCTTGCTTGTCTCGGCTCAGGTGGCCAAGGCTG
GGCGCTTCGCCCATCCGCCTGAAGATCCAAACACCATCCTGTCGCGCGCC
GAATATGGCTATCAGTTCGATCCGATGGAGTGGGCGGCCTTGCTCGATCA
TGACGTCGCGGACAGCACAGTTGAACGAATCGAGAGCGAAGTCCGATCAA
TTTAA
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