mRNA_C-australica_Contig_10192.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10192.1.1
Unique NamemRNA_C-australica_Contig_10192.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10192.1.1 vs. uniprot
Match: A0A2D4S9A3_9GAMM (Type II secretion system protein GspD n=1 Tax=Salinisphaeraceae bacterium TaxID=2026789 RepID=A0A2D4S9A3_9GAMM)

HSP 1 Score: 356 bits (914), Expect = 1.360e-115
Identity = 193/279 (69.18%), Postives = 233/279 (83.51%), Query Frame = 1
Query:    1 RTNSVIIAGDPTSRLRLRAIIADLDTPVDQDGGTQVIYLDYADAETLAPILQTFAENQSQQGNRGGNSNNAS--QSASINVIAEPGANAIVVNAPADAMREIRTVIDQLDIRRGQVLVEAIIAEVSMDRSRQLGIDTAVFDDNTAVAGSILDNSTLEAIPALAGNGTPLGLIQQGLNFGIGDLNSDGTSFAVLLKALSGDSNTNVLSTPSHLTRDNEEAEIQVGQEVPFITGNFTNTGTGGGGTGGNLNPFQTVERRDVGLTLTLTPQINAGNTIQLTL 831
            RTNSV+I+GD T+R+RLRA+IADLDTPV++ GGTQVIYL+YADAE++AP LQ+FA++  Q GNR GN+  A   QS +++VIAEPGANA+VV APAD MREIR+VI+QLDIRRGQVLVEAIIAEV+  RSR LG++ AV + N  VA S+LD +TL AIP+LA +GTPLGLIQQG+N   G +N +GTSFA LL+ALSG+S+TNVLSTPS +TRDNEEAEI V QEVPFITGNFT+  + GGG  G +NPFQTVERRDVGL L LTPQIN G+TI LT+
Sbjct:  238 RTNSVLISGDSTARVRLRAVIADLDTPVERQGGTQVIYLNYADAESVAPALQSFAQSAQQGGNRAGNNAAAGGGQSEAVSVIAEPGANALVVTAPADVMREIRSVIEQLDIRRGQVLVEAIIAEVTFSRSRDLGVNLAVLNGNGPVAASVLDQNTLSAIPSLATDGTPLGLIQQGINLAAGQINENGTSFAALLRALSGNSDTNVLSTPSLITRDNEEAEITVAQEVPFITGNFTSGVSQGGGQQGIVNPFQTVERRDVGLILGLTPQINTGDTIALTI 516          
BLAST of mRNA_C-australica_Contig_10192.1.1 vs. uniprot
Match: F7Q2Y0_9GAMM (Type II secretion system protein D n=2 Tax=Salinisphaera TaxID=180541 RepID=F7Q2Y0_9GAMM)

HSP 1 Score: 341 bits (874), Expect = 1.150e-109
Identity = 187/293 (63.82%), Postives = 229/293 (78.16%), Query Frame = 1
Query:    1 RTNSVIIAGDPTSRLRLRAIIADLDTPVDQDGGTQVIYLDYADAETLAPILQTFAENQSQQGNRGGNSNNASQSAS----------------INVIAEPGANAIVVNAPADAMREIRTVIDQLDIRRGQVLVEAIIAEVSMDRSRQLGIDTAVFDDNTAVAGSILDNSTLEAIPALAGNGTPLGLIQQGLNFGIGDLNSDGTSFAVLLKALSGDSNTNVLSTPSHLTRDNEEAEIQVGQEVPFITGNFTNTGTGGGGTGGNLNPFQTVERRDVGLTLTLTPQINAGNTIQLTL 831
            RTNSVII+G    RLRLRAIIADLDT  +Q GGTQV+YLDYADAETLAP+LQ FA      GN    S+ ++ S++                + VIAEP ANA+VV APAD MR+I+ VI+QLDIRRGQVLVEAIIAEV++ RSRQLG++ AVF+D    A SILD+ TL+ +P+LA +GTPL L+QQG+N GIG+++  GTSFAVL+ ALSG++NTNVLSTPS +TRDNEEAEI+VGQEVPF+TGN+T+  TGGGGT G  NPFQT+ER+DVGLTL  TPQI+AG+TIQLT+
Sbjct:  236 RTNSVIISGARKERLRLRAIIADLDTATEQTGGTQVVYLDYADAETLAPVLQNFAS-----GNGASPSSTSAASSAGSAQTRPSGGGLGGNGVTVIAEPAANALVVTAPADTMRQIKQVINQLDIRRGQVLVEAIIAEVTLSRSRQLGVNVAVFEDGGPAAASILDSRTLDVVPSLALDGTPLELVQQGINLGIGNISDSGTSFAVLVNALSGNTNTNVLSTPSLITRDNEEAEIKVGQEVPFVTGNYTSGTTGGGGTNGLTNPFQTIERKDVGLTLGFTPQISAGDTIQLTI 523          
BLAST of mRNA_C-australica_Contig_10192.1.1 vs. uniprot
Match: A0A2E0IWL4_9GAMM (Type II secretion system protein GspD n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E0IWL4_9GAMM)

HSP 1 Score: 336 bits (862), Expect = 7.340e-108
Identity = 185/295 (62.71%), Postives = 224/295 (75.93%), Query Frame = 1
Query:    1 RTNSVIIAGDPTSRLRLRAIIADLDTPVDQDGGTQVIYLDYADAETLAPILQTFAENQSQQGNR------------------GGNSNNASQSASINVIAEPGANAIVVNAPADAMREIRTVIDQLDIRRGQVLVEAIIAEVSMDRSRQLGIDTAVFDDNTAVAGSILDNSTLEAIPALAGNGTPLGLIQQGLNFGIGDLNSDGTSFAVLLKALSGDSNTNVLSTPSHLTRDNEEAEIQVGQEVPFITGNFTNTGTGGGGTGGNLNPFQTVERRDVGLTLTLTPQINAGNTIQLTL 831
            RTNSVII+G    RLRLRAIIADLDT  +Q GGTQV+YLDYADAET+AP+LQ +A+ Q                        G N         ++VIAEPGANA+VV APAD MR+I+ VI+QLDIRRGQVLVEAIIAEVS+ RSRQLG++ A F++    A SILD+STL+A+P+LA +GTPL LIQQGLN  +GD+N  GT FAVL+ ALSG++NTNVLSTPS +TRDNEEAEI+VGQEVPF+TGN+T+  TGGG + G  NPFQT+ER+DVGLTL  TPQI+AG+TIQLT+
Sbjct:  238 RTNSVIISGGRQERLRLRAIIADLDTESEQSGGTQVVYLDYADAETIAPVLQNYADGQGATSTSXXXXXXXXXXXXXXXXXXGANG--------VSVIAEPGANALVVTAPADTMRQIKQVIEQLDIRRGQVLVEAIIAEVSLTRSRQLGVNVAAFENGGPAAASILDSSTLDAVPSLAMDGTPLSLIQQGLNVALGDINDSGTGFAVLVNALSGNTNTNVLSTPSLITRDNEEAEIKVGQEVPFVTGNYTSGTTGGGVSNGLTNPFQTIERKDVGLTLGFTPQISAGDTIQLTI 524          
BLAST of mRNA_C-australica_Contig_10192.1.1 vs. uniprot
Match: A0A423PXX2_9GAMM (General secretion pathway protein D n=3 Tax=Salinisphaera TaxID=180541 RepID=A0A423PXX2_9GAMM)

HSP 1 Score: 331 bits (849), Expect = 5.950e-106
Identity = 183/287 (63.76%), Postives = 216/287 (75.26%), Query Frame = 1
Query:    1 RTNSVIIAGDPTSRLRLRAIIADLDTPVDQDGGTQVIYLDYADAETLAPILQTFAENQSQQGNRGGNSNNASQSA----------SINVIAEPGANAIVVNAPADAMREIRTVIDQLDIRRGQVLVEAIIAEVSMDRSRQLGIDTAVFDDNTAVAGSILDNSTLEAIPALAGNGTPLGLIQQGLNFGIGDLNSDGTSFAVLLKALSGDSNTNVLSTPSHLTRDNEEAEIQVGQEVPFITGNFTNTGTGGGGTGGNLNPFQTVERRDVGLTLTLTPQINAGNTIQLTL 831
            RTNS+I++G    RLR+RAIIADLDT  ++ GGTQVIYLDYADAE +AP+LQ FAE +S  G                        + VIAEPGANA+VV A AD M+EIR VI+QLDIRRGQVLVEAIIAEVS+ RSRQLG+D A F+D+   A S+LD  TL A+P+LA +GTPL LIQQGLN  +G  N  GTSFAVL+ ALSG++NTNVLSTPS +TRDNEEAEI+VGQEVPF+TGN+TN    GG TG  +NPFQTVER+DVGLTL  TPQINAG TIQ+T+
Sbjct:  235 RTNSLIVSGGKQQRLRIRAIIADLDTQTERSGGTQVIYLDYADAEAIAPVLQNFAEGRSSSGASAXXXXXXXXXXXXXXXXXXXNGVTVIAEPGANALVVTAAADKMQEIRQVIEQLDIRRGQVLVEAIIAEVSLSRSRQLGVDIAAFNDSGPGAASVLDGDTLNAVPSLAEDGTPLSLIQQGLNVALGSYNEGGTSFAVLVNALSGNTNTNVLSTPSLITRDNEEAEIKVGQEVPFVTGNYTNNNASGGATG-VVNPFQTVERKDVGLTLAFTPQINAGKTIQMTI 520          
BLAST of mRNA_C-australica_Contig_10192.1.1 vs. uniprot
Match: A0A1Y1SFK2_9GAMM (General secretion pathway protein D n=1 Tax=Oceanococcus atlanticus TaxID=1317117 RepID=A0A1Y1SFK2_9GAMM)

HSP 1 Score: 279 bits (714), Expect = 1.280e-85
Identity = 155/279 (55.56%), Postives = 200/279 (71.68%), Query Frame = 1
Query:    1 RTNSVIIAGDPTSRLRLRAIIADLDTPVDQDGGTQVIYLDYADAETLAPILQTFAENQSQQGNRGGNSNNASQSASINVIAEPGANAIVVNAPADAMREIRTVIDQLDIRRGQVLVEAIIAEVSMDRSRQLGIDTAVFDDNTAVAGSILDNSTLE-AIPALAGN-GTPLGLIQQGLNFGIGDLNSDGTSFAVLLKALSGDSNTNVLSTPSHLTRDNEEAEIQVGQEVPFITGNFTNTGTGGGGTGGNLNPFQTVERRDVGLTLTLTPQINAGNTIQLTL 831
            RTNS+I++ D   R+R+RA+IA LD P+++DG TQVIYL YADAETLAPIL+ +AE Q+          +   +  + ++AEP  NA+V+ AP   MR +R+VI QLDIRR QVLVEAI+AEVS++RSRQLGID AV +D    A SI + + +  A  A +GN     GL++ G N G G +  DGTSFA+LL AL+GD  TNVLSTPS +T DNEEAEI VGQEVPF+TG++ N+ TG       +NPFQT+ERRDVGLTL +TPQIN G+TI+LT+
Sbjct:  242 RTNSLILSSDKAQRMRIRALIAHLDIPLEEDGDTQVIYLSYADAETLAPILEGYAETQTNAKGGAKKEGSGGSNPDVRIVAEPNTNALVITAPPKIMRGLRSVIAQLDIRRAQVLVEAILAEVSINRSRQLGIDWAVLNDERIAAASIFNQNVITGAAAAASGNIAGATGLLRTGFNVGGGSIKDDGTSFALLLNALAGDGETNVLSTPSLVTMDNEEAEISVGQEVPFLTGSYGNSNTGS-----TVNPFQTIERRDVGLTLGITPQINEGDTIKLTI 515          
BLAST of mRNA_C-australica_Contig_10192.1.1 vs. uniprot
Match: A0A363UK93_9GAMM (Type II secretion system protein GspD n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A363UK93_9GAMM)

HSP 1 Score: 266 bits (681), Expect = 8.890e-81
Identity = 152/283 (53.71%), Postives = 196/283 (69.26%), Query Frame = 1
Query:    1 RTNSVIIAGDPTSRLRLRAIIADLDTPVDQDGGTQVIYLDYADAETLAPILQTFAENQSQQGNRGGNSNNASQSASI-NVIAEPGANAIVVNAPADAMREIRTVIDQLDIRRGQVLVEAIIAEVSMDRSRQLGIDTAVFDDNTAVAGSILDNSTLEAIPALAGNGT-------PLGLIQQGLNFGIGDLNSDGTSFAVLLKALSGDSNTNVLSTPSHLTRDNEEAEIQVGQEVPFITGNFTNTGTGGGGTGGNLNPFQTVERRDVGLTLTLTPQINAGNTIQL 825
            RTN+++I GD  +R + R II +LD P++  G TQVIYL YA AE L P+LQ + E Q      GG +  A  SAS+  VI EP  NA+VV AP   MR ++ V+ QLDIRR QVLVEAIIAEVS  +SR+LGID+ V+D++   A +ILD  TL  + ++AG  T          LI+QG+    G +N +GTSF  LLKAL+GD NTN+LSTP+ +T DNEEAEI VGQEVPF++G F+NTGT    T G +NPFQT++R+DVG+TL +TPQIN G+TIQL
Sbjct:  231 RTNALLIGGDKATRNQFRGIITELDLPLEDSGSTQVIYLRYASAENLGPVLQGYVE-QVAANEAGGQNKQAGSSASVVKVIPEPDTNALVVTAPPKIMRAVKDVVSQLDIRRAQVLVEAIIAEVSESKSRELGIDSVVYDNDRIAAANILDADTLNILGSVAGAATGSITGAAAAALIEQGITAAGGRVNENGTSFLFLLKALAGDGNTNILSTPTLVTMDNEEAEISVGQEVPFLSGQFSNTGTSS--TTGIVNPFQTIDRKDVGITLGITPQINEGDTIQL 510          
BLAST of mRNA_C-australica_Contig_10192.1.1 vs. uniprot
Match: A0A2E3NRD5_9GAMM (Type II secretion system protein GspD n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A2E3NRD5_9GAMM)

HSP 1 Score: 266 bits (680), Expect = 1.250e-80
Identity = 151/283 (53.36%), Postives = 199/283 (70.32%), Query Frame = 1
Query:    1 RTNSVIIAGDPTSRLRLRAIIADLDTPVDQDGGTQVIYLDYADAETLAPILQTFAENQSQQGNRGGNSNNASQSASI-NVIAEPGANAIVVNAPADAMREIRTVIDQLDIRRGQVLVEAIIAEVSMDRSRQLGIDTAVFDDNTAVAGSILDNSTLEAIPALAGNGT-------PLGLIQQGLNFGIGDLNSDGTSFAVLLKALSGDSNTNVLSTPSHLTRDNEEAEIQVGQEVPFITGNFTNTGTGGGGTGGNLNPFQTVERRDVGLTLTLTPQINAGNTIQL 825
            RTN+++I GD  +R + R+IIA+LD P++  G TQVIYL YA AE L P+LQ + E Q      GG +N A  SAS+  VI EP  NA+V+ AP   MR ++ V+ QLDIRR QVLVEAIIAEVS  +SR+LGID+ +FD++   A +ILD  TL A+ ++AG  T          LI+QG+    G  N +GTSF  LLKAL+GD NTN+LSTP+ +T DNEEAEI VGQEVPF++G ++N+GT    + G +NPFQT++R+DVG+TL +TPQIN G+TIQL
Sbjct:  229 RTNALLIGGDKATRSQFRSIIAELDLPLEDSGSTQVIYLRYASAENLGPVLQGYVE-QVAASEGGGQNNQARTSASVVKVIPEPDTNALVITAPPKIMRAVKDVVAQLDIRRAQVLVEAIIAEVSESKSRELGIDSVLFDEDRIAAANILDPGTLNALTSVAGAATGSITGAAAAALIEQGITLAGGRYNXNGTSFLFLLKALAGDGNTNILSTPTLVTMDNEEAEISVGQEVPFLSGQYSNSGTTS--STGLVNPFQTIDRKDVGITLGITPQINEGDTIQL 508          
BLAST of mRNA_C-australica_Contig_10192.1.1 vs. uniprot
Match: A0A2E2J703_9GAMM (Type II secretion system protein GspD n=1 Tax=Polycyclovorans sp. TaxID=2024852 RepID=A0A2E2J703_9GAMM)

HSP 1 Score: 261 bits (668), Expect = 4.320e-79
Identity = 151/289 (52.25%), Postives = 198/289 (68.51%), Query Frame = 1
Query:    1 RTNSVIIAGDPTSRLRLRAIIADLDTPVDQDGGTQVIYLDYADAETLAPILQTFAENQSQQ-------GNRGGNSNNASQSASINVIAEPGANAIVVNAPADAMREIRTVIDQLDIRRGQVLVEAIIAEVSMDRSRQLGIDTAVFDDNTAVAGSILDNSTLEAIPALAGNGT-----PLGLIQQGLNFGIGDLNSDGTSFAVLLKALSGDSNTNVLSTPSHLTRDNEEAEIQVGQEVPFITGNFTNTGTGGGGTGGNLNPFQTVERRDVGLTLTLTPQINAGNTIQLTL 831
            R+NS++I GD + R +   II  LD  +  DG TQVIYL +A AE LAPIL+ +AE  S+        G  GG +  A  + ++ V+A+P  NA++V AP   MR++R VI QLDI+R QVLVEAIIAEVS D+S QLG+D AVF+++   A  ILD+STL+ + A A +G       LGL+ QGLN  IG   S  T+F +L+KAL GD +TN+LSTP+ +T DN+EA    GQEVPF+TG+F+NTG G G  GG +NPFQT+ERRDVGLTL +TPQIN G+ I+L L
Sbjct:  228 RSNSILIGGDKSERQKFLDIIRTLDIELKGDGATQVIYLRHASAENLAPILEGYAEQVSEAEAATAKGGGEGGGARRAGANPAVRVLADPDTNAMIVTAPPKIMRQVRDVIAQLDIQRAQVLVEAIIAEVSSDQSSQLGVDWAVFNNDRVAAAGILDSSTLQGLQAAAASGNVDPTAALGLLGQGLNVAIGRAGS-ATTFGLLVKALQGDGDTNILSTPTLVTLDNQEASFSAGQEVPFLTGSFSNTGVGAG-VGGAVNPFQTIERRDVGLTLGVTPQINEGDAIKLVL 514          
BLAST of mRNA_C-australica_Contig_10192.1.1 vs. uniprot
Match: UPI000A05F3C5 (type II secretion system secretin GspD n=1 Tax=Polycyclovorans algicola TaxID=616992 RepID=UPI000A05F3C5)

HSP 1 Score: 260 bits (664), Expect = 1.430e-78
Identity = 148/289 (51.21%), Postives = 196/289 (67.82%), Query Frame = 1
Query:    1 RTNSVIIAGDPTSRLRLRAIIADLDTPVDQDGGTQVIYLDYADAETLAPILQTFAENQSQQ-------GNRGGNSNNASQSASINVIAEPGANAIVVNAPADAMREIRTVIDQLDIRRGQVLVEAIIAEVSMDRSRQLGIDTAVFDDNTAVAGSILDNSTLEAIPALAGNG-----TPLGLIQQGLNFGIGDLNSDGTSFAVLLKALSGDSNTNVLSTPSHLTRDNEEAEIQVGQEVPFITGNFTNTGTGGGGTGGNLNPFQTVERRDVGLTLTLTPQINAGNTIQLTL 831
            R+NS++I GD   R +   II  LD  +  DG TQVIYL +ADAE LAPIL+ +AE  S+        G  GG +  +  +  + V+A+P  NA++V AP   MR++R VI QLDI+R QVLVEA+IAEVS D+S QLG+D AVF+++   A  ILD+STL+ + A A  G       LG++ QGLN  IG   S  T+F +L+KAL GD +TN+LSTP+ +T DN+EA    GQEVPF+TG+F+NTG G G  GG +NPFQT+ERRDVGLTL +TPQIN G+ I++ L
Sbjct:  226 RSNSILIGGDKAERQKFVDIIQTLDIELKGDGATQVIYLRHADAENLAPILEGYAEQVSEAEAATASGGGEGGGARRSGANPMVRVLADPDTNAMIVTAPPKIMRQVRDVIAQLDIQRAQVLVEAVIAEVSSDQSSQLGVDWAVFNEDRVAAAGILDSSTLQGLQAAASGGDIDGTAALGVLGQGLNVAIGRAGSS-TTFGLLVKALQGDGDTNILSTPTLVTLDNQEASFSAGQEVPFLTGSFSNTGAGAG-VGGQVNPFQTIERRDVGLTLGVTPQINEGDAIKMVL 512          
BLAST of mRNA_C-australica_Contig_10192.1.1 vs. uniprot
Match: A0A4R7PF93_9GAMM (General secretion pathway protein D n=1 Tax=Panacagrimonas perspica TaxID=381431 RepID=A0A4R7PF93_9GAMM)

HSP 1 Score: 261 bits (667), Expect = 1.590e-78
Identity = 153/297 (51.52%), Postives = 204/297 (68.69%), Query Frame = 1
Query:    1 RTNSVIIAGDPTSRLRLRAIIADLDTPVDQDGGTQVIYLDYADAETLAPILQTFAENQSQQGNRGGNSNNASQSAS---------INVIAEPGANAIVVNAPADAMREIRTVIDQLDIRRGQVLVEAIIAEVSMDRSRQLGIDTAVFDDNTAVAGSILDNSTLEAIPALA---GNGTP--------LGLIQQGLNFGIGDLNSDGTSFAVLLKALSGDSNTNVLSTPSHLTRDNEEAEIQVGQEVPFITGNFTNTGTGGGGTGGNLNPFQTVERRDVGLTLTLTPQINAGNTIQLTL 831
            R+N+V++AGD T R++L  II  LD PV +DG TQV+YL YAD+E LAPIL+ +A    QQ N+G     A+Q+A+         + V+A+   NA+++ AP   MR++R VI QLDIRR QVLVE IIAEVS  +S  LGID AVF+ +   A  +LD +TL A+ AL    G+ +         LGL+  G+N G G +  +GTSFA+LLKA+ GD ++NVLSTP+ +T DNEEAEI VGQEVPF+TG+F+NTG+     G +LNPFQT+ER+DVGLTL +TPQIN G+ I+L L
Sbjct:  228 RSNAVLVAGDRTERVKLLEIIKQLDVPVGEDGATQVVYLKYADSENLAPILEGYA----QQVNKGPAGAQAAQAAATAAGPNANGVRVLADKDTNALIITAPPKTMRQVRDVIAQLDIRRAQVLVEGIIAEVSASKSSALGIDWAVFNGDRIAAAGLLDPATLAAVQALGTVTGSSSSSSNSDLAALGLLGNGINIGGGRVGGNGTSFALLLKAIKGDGDSNVLSTPTLVTMDNEEAEISVGQEVPFLTGSFSNTGSS---NGSSLNPFQTIERKDVGLTLGITPQINEGDNIKLKL 517          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10192.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D4S9A3_9GAMM1.360e-11569.18Type II secretion system protein GspD n=1 Tax=Sali... [more]
F7Q2Y0_9GAMM1.150e-10963.82Type II secretion system protein D n=2 Tax=Salinis... [more]
A0A2E0IWL4_9GAMM7.340e-10862.71Type II secretion system protein GspD n=3 Tax=Gamm... [more]
A0A423PXX2_9GAMM5.950e-10663.76General secretion pathway protein D n=3 Tax=Salini... [more]
A0A1Y1SFK2_9GAMM1.280e-8555.56General secretion pathway protein D n=1 Tax=Oceano... [more]
A0A363UK93_9GAMM8.890e-8153.71Type II secretion system protein GspD n=2 Tax=Gamm... [more]
A0A2E3NRD5_9GAMM1.250e-8053.36Type II secretion system protein GspD n=1 Tax=Xant... [more]
A0A2E2J703_9GAMM4.320e-7952.25Type II secretion system protein GspD n=1 Tax=Poly... [more]
UPI000A05F3C51.430e-7851.21type II secretion system secretin GspD n=1 Tax=Pol... [more]
A0A4R7PF93_9GAMM1.590e-7851.52General secretion pathway protein D n=1 Tax=Panaca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10192contigC-australica_Contig_10192:3..833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1033802.SSPSH_003278
Preferred namegspD
PFAMsSecretin,Secretin_N
Model size831
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K02453
KEGG TC3.A.15
KEGG Pathwayko03070,ko05111,map03070,map05111
KEGG ModuleM00331
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.89e-110
EggNOG OGsCOG1450@1|root,COG1450@2|Bacteria,1MUUA@1224|Proteobacteria,1RPJS@1236|Gammaproteobacteria
DescriptionGeneral Secretion Pathway protein
Cds size831
COG categoryNU
BRITEko00000,ko00001,ko00002,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586754.0983415-CDS-C-australica_Contig_10192:2..8331682586754.0983415-CDS-C-australica_Contig_10192:2..833Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10192 3..833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10192.1.1prot_C-australica_Contig_10192.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10192 3..833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10192.1.1

>prot_C-australica_Contig_10192.1.1 ID=prot_C-australica_Contig_10192.1.1|Name=mRNA_C-australica_Contig_10192.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=277bp
RTNSVIIAGDPTSRLRLRAIIADLDTPVDQDGGTQVIYLDYADAETLAPI
LQTFAENQSQQGNRGGNSNNASQSASINVIAEPGANAIVVNAPADAMREI
RTVIDQLDIRRGQVLVEAIIAEVSMDRSRQLGIDTAVFDDNTAVAGSILD
NSTLEAIPALAGNGTPLGLIQQGLNFGIGDLNSDGTSFAVLLKALSGDSN
TNVLSTPSHLTRDNEEAEIQVGQEVPFITGNFTNTGTGGGGTGGNLNPFQ
TVERRDVGLTLTLTPQINAGNTIQLTL
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mRNA from alignment at C-australica_Contig_10192:3..833+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10192.1.1 ID=mRNA_C-australica_Contig_10192.1.1|Name=mRNA_C-australica_Contig_10192.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=831bp|location=Sequence derived from alignment at C-australica_Contig_10192:3..833+ (Chrysoparadoxa australica CS_1217)
CGCACCAACAGCGTGATCATCGCCGGCGACCCGACCAGCCGCCTGCGGCT GCGGGCCATCATTGCCGACCTGGATACCCCGGTGGATCAGGACGGCGGCA CCCAGGTGATCTACCTCGATTACGCGGATGCCGAGACCCTGGCCCCGATC CTCCAGACATTCGCCGAAAACCAGTCACAGCAAGGCAATCGCGGCGGCAA CAGTAACAACGCCAGCCAATCGGCCAGCATCAATGTCATCGCCGAGCCCG GCGCAAACGCCATCGTGGTCAACGCCCCCGCCGACGCAATGCGGGAAATC CGCACGGTGATCGATCAGCTCGACATCCGCCGTGGCCAAGTGCTGGTGGA GGCGATCATCGCCGAAGTCAGCATGGACCGGTCACGCCAGCTGGGTATCG ACACGGCCGTGTTCGACGATAACACCGCGGTGGCCGGCAGCATTCTGGAT AACAGCACGCTGGAAGCCATTCCGGCTCTGGCGGGAAATGGCACGCCGCT GGGCCTGATCCAGCAGGGGCTGAATTTCGGCATCGGCGACCTGAACTCGG ACGGCACCAGCTTCGCCGTGTTGCTCAAAGCCCTGTCGGGCGACTCCAAT ACCAACGTACTGTCCACCCCGTCGCATCTGACGCGCGACAACGAGGAGGC CGAAATCCAGGTCGGCCAGGAAGTGCCGTTCATCACCGGTAACTTCACCA ATACCGGTACGGGCGGCGGTGGCACCGGCGGTAACCTCAACCCGTTCCAG ACTGTTGAACGCCGCGACGTGGGCCTGACGCTGACGCTGACGCCACAGAT AAACGCGGGCAATACCATCCAGTTGACCCTG
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Coding sequence (CDS) from alignment at C-australica_Contig_10192:3..833+

>mRNA_C-australica_Contig_10192.1.1 ID=mRNA_C-australica_Contig_10192.1.1|Name=mRNA_C-australica_Contig_10192.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=831bp|location=Sequence derived from alignment at C-australica_Contig_10192:3..833+ (Chrysoparadoxa australica CS_1217)
CGCACCAACAGCGTGATCATCGCCGGCGACCCGACCAGCCGCCTGCGGCT
GCGGGCCATCATTGCCGACCTGGATACCCCGGTGGATCAGGACGGCGGCA
CCCAGGTGATCTACCTCGATTACGCGGATGCCGAGACCCTGGCCCCGATC
CTCCAGACATTCGCCGAAAACCAGTCACAGCAAGGCAATCGCGGCGGCAA
CAGTAACAACGCCAGCCAATCGGCCAGCATCAATGTCATCGCCGAGCCCG
GCGCAAACGCCATCGTGGTCAACGCCCCCGCCGACGCAATGCGGGAAATC
CGCACGGTGATCGATCAGCTCGACATCCGCCGTGGCCAAGTGCTGGTGGA
GGCGATCATCGCCGAAGTCAGCATGGACCGGTCACGCCAGCTGGGTATCG
ACACGGCCGTGTTCGACGATAACACCGCGGTGGCCGGCAGCATTCTGGAT
AACAGCACGCTGGAAGCCATTCCGGCTCTGGCGGGAAATGGCACGCCGCT
GGGCCTGATCCAGCAGGGGCTGAATTTCGGCATCGGCGACCTGAACTCGG
ACGGCACCAGCTTCGCCGTGTTGCTCAAAGCCCTGTCGGGCGACTCCAAT
ACCAACGTACTGTCCACCCCGTCGCATCTGACGCGCGACAACGAGGAGGC
CGAAATCCAGGTCGGCCAGGAAGTGCCGTTCATCACCGGTAACTTCACCA
ATACCGGTACGGGCGGCGGTGGCACCGGCGGTAACCTCAACCCGTTCCAG
ACTGTTGAACGCCGCGACGTGGGCCTGACGCTGACGCTGACGCCACAGAT
AAACGCGGGCAATACCATCCAGTTGACCCTG
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