mRNA_C-australica_Contig_1019.3.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1019.3.1
Unique NamemRNA_C-australica_Contig_1019.3.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1019.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1019contigC-australica_Contig_1019:3317..8090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2427
Hectar predicted targeting categoryother localisation
Exons18
Cds size2073
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1019.3.1prot_C-australica_Contig_1019.3.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1019 3508..7927 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586753.3288808-UTR-C-australica_Contig_1019:3316..35071682586753.3288808-UTR-C-australica_Contig_1019:3316..3507Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1019 3317..3507 +
1682586753.549514-UTR-C-australica_Contig_1019:7927..80901682586753.549514-UTR-C-australica_Contig_1019:7927..8090Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1019 7928..8090 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586753.3464217-CDS-C-australica_Contig_1019:3507..36211682586753.3464217-CDS-C-australica_Contig_1019:3507..3621Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 3508..3621 +
1682586753.3576474-CDS-C-australica_Contig_1019:3692..38091682586753.3576474-CDS-C-australica_Contig_1019:3692..3809Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 3693..3809 +
1682586753.370905-CDS-C-australica_Contig_1019:3952..40341682586753.370905-CDS-C-australica_Contig_1019:3952..4034Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 3953..4034 +
1682586753.3810148-CDS-C-australica_Contig_1019:4111..41791682586753.3810148-CDS-C-australica_Contig_1019:4111..4179Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 4112..4179 +
1682586753.3944368-CDS-C-australica_Contig_1019:4301..43821682586753.3944368-CDS-C-australica_Contig_1019:4301..4382Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 4302..4382 +
1682586753.4027355-CDS-C-australica_Contig_1019:4612..46751682586753.4027355-CDS-C-australica_Contig_1019:4612..4675Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 4613..4675 +
1682586753.4117174-CDS-C-australica_Contig_1019:4744..48551682586753.4117174-CDS-C-australica_Contig_1019:4744..4855Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 4745..4855 +
1682586753.421249-CDS-C-australica_Contig_1019:4927..50221682586753.421249-CDS-C-australica_Contig_1019:4927..5022Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 4928..5022 +
1682586753.4305847-CDS-C-australica_Contig_1019:5175..52391682586753.4305847-CDS-C-australica_Contig_1019:5175..5239Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 5176..5239 +
1682586753.4390316-CDS-C-australica_Contig_1019:5402..54911682586753.4390316-CDS-C-australica_Contig_1019:5402..5491Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 5403..5491 +
1682586753.4501338-CDS-C-australica_Contig_1019:5764..59921682586753.4501338-CDS-C-australica_Contig_1019:5764..5992Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 5765..5992 +
1682586753.4654033-CDS-C-australica_Contig_1019:6212..62771682586753.4654033-CDS-C-australica_Contig_1019:6212..6277Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 6213..6277 +
1682586753.482436-CDS-C-australica_Contig_1019:6384..65031682586753.482436-CDS-C-australica_Contig_1019:6384..6503Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 6385..6503 +
1682586753.493691-CDS-C-australica_Contig_1019:6658..67781682586753.493691-CDS-C-australica_Contig_1019:6658..6778Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 6659..6778 +
1682586753.5036557-CDS-C-australica_Contig_1019:6872..69591682586753.5036557-CDS-C-australica_Contig_1019:6872..6959Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 6873..6959 +
1682586753.5146363-CDS-C-australica_Contig_1019:7109..72381682586753.5146363-CDS-C-australica_Contig_1019:7109..7238Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 7110..7238 +
1682586753.5320108-CDS-C-australica_Contig_1019:7369..75451682586753.5320108-CDS-C-australica_Contig_1019:7369..7545Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 7370..7545 +
1682586753.5414355-CDS-C-australica_Contig_1019:7662..79271682586753.5414355-CDS-C-australica_Contig_1019:7662..7927Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1019 7663..7927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1019.3.1

>prot_C-australica_Contig_1019.3.1 ID=prot_C-australica_Contig_1019.3.1|Name=mRNA_C-australica_Contig_1019.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=691bp
MPTPEYEEQAAETQASITSCMEGVVEAMMINPVSPKKKSRRRRPSSSDSP
ISNSKVLGPKRFSYGYTTYIREDLAIQGQSTESYVSEPTTTYAWWWRQRN
RTKGELEPCVLYCSAAAGVAGAKEARKALCPLLAAGLSVMALDLWSYGAP
LTLGVGERQHIANALFFLKERGVTEVTLWGHGAGASTVLWYMSSAGDNWE
KDCMPPILGAVLESPLPSFESMLVEALEIAEAAHVSQGGSTFTRNPSLLH
AAVRVLHTDITNHFGVNAFDLRPNSAAVHCDLPCLLAYGSAEAAGPNEVS
AAYGGQLTEVHLDHGRDAAHRSLVREAVAFVSELLKAREKAKAEAEADGV
AGQLDVQEHPPLSKKEGVRCRLAKIMKRKPKRKLSPSRTTTAGLASHPGF
NLAVGAGHASSGDLPTLSALAVEVRYISQQLQGGDLGSDACKALIEPGPL
GPLDPLNESDEAKRVEQRASEEELWDYDDLCPPSPSVVMNTSGVSAIFDL
EDMEQTDRLPTRLFTDHPEDSIWVQDDKLSQDLQLPRTGSAATQILEYTG
TGRHASFLSDEGLTLEDDSEAKHGGEEGRQKSRQRHHKPKAQVSLLAQAA
AARGMESSKGMEQARQRKPSLDSLESSESTATDDLDQFSCSPPSHMAPKP
PHSTATSGCGGLAECDAPAHPHLVDEQESPHIMVKCLDTG*
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mRNA from alignment at C-australica_Contig_1019:3317..8090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1019.3.1 ID=mRNA_C-australica_Contig_1019.3.1|Name=mRNA_C-australica_Contig_1019.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=4774bp|location=Sequence derived from alignment at C-australica_Contig_1019:3317..8090+ (Chrysoparadoxa australica CS_1217)
CGTCTTCCCGACCCCCTACGTTCTACGGTAGCGATTAGCATTCCTTTGGA
CCTCCTTCAGTAAAGCGAAGGCGTAGGAAGAGGTAGAAGAAGTGGCCTCT
CTTTTTCCGGGAGTCGTTGCGGAGGTATAATTCCGGAGTGCAGAGCGCAC
AAAAGGTCTTCTGCAGTCTCTTGCGTGCGACCACTTCAGCTATGCCTACG
CCAGAGTATGAGGAGCAGGCAGCCGAGACTCAAGCGAGCATCACTTCTTG
CATGGAGGGTGTGGTGGAGGCTATGATGATCAATCCCGTCAGTCCTAAGA
AAAAGGTGATTATAATGTGCCAATAACTCCCTCACAGCTCATCCTGACCT
CTCCTCACCTCCTGCGCATGAGATAGTCCCGGAGACGAAGGCCCTCCAGC
AGCGATAGCCCCATTAGCAACAGCAAGGTGTTGGGACCGAAGAGGTTCAG
CTACGGCTACACCACCTACATCAGGGAAGACCTTGCGATACAGGTGAGAG
TCTACCTGGCTCATGGAGAGCTTCCTGCTACCGGGCATCATATTGTTCCA
TGGCTGTGAGGTGGACTGCTGTGACTAGCTGGCTGCTGTATTTCGGCTAA
AGATTCTACTGCCACATGCGCCCACCTCACCTTCAGGGTCAGAGCACTGA
GTCGTATGTGAGTGAGCCAACCACGACATACGCTTGGTGGTGGAGGCAAA
GGAATCGCACAAAGGGCGGTCAGTTACTTCTCCACCATTTATATATATTC
CTGCCTGACCTGCTCCTGGCCTAAGTTTTAGCATTCCTTCATCAGAGCTT
GAGCCATGTGTGCTGTACTGCTCAGCTGCTGCTGGGGTAGCAGGGGCAAA
GGAGGCAAGAAAGGTGGGGAGTGTGGGGCGAAAAGCGCTTACGAGCTGCA
TGCCGAGGGGGGAGATAAGCGTTGAGTGGGTGGAGAAGGGAACAAGCATG
CTTATTACTGCTGCGATTCCTGCTGCTGCCATCAGGCCCTCTGTCCCCTA
CTAGCAGCTGGCCTCTCTGTTATGGCACTTGATCTCTGGTCCTATGGGGC
TCCCCTGACACTTGGGGTGAGGAAGCTCTCTCGCTCTCTTGCACCTCCAT
CCAACCAACCAACATGATCCAGGATTCATGATTCCCATGTTGTTTTACGC
TGCGGAGACTGAACATGGCCTCAAATAACCCCAATAGCCTCAAGAGCTCT
GGATTGACAAGTTTAATTTTCCCTGCTTGATACTCTATTGGAAGATGCTT
CCATTTTGCATTGTTTAAGTGAAATAACTGGGTTGATTGCCATTAGGTGG
GCGAGCGGCAGCATATTGCCAACGCGCTGTTCTTCCTCAAGGAGAGAGGC
GTAACTGAGGTAATAGGGTGGCCCTCCTGCTGACGTGACCACACTTGGCC
TCACTGGACCTCACACTACCTACACCAGGTGACCCTATGGGGACACGGTG
CAGGAGCCTCCACCGTGCTGTGGTATATGTCATCTGCCGGTGACAACTGG
GAAAAGGACTGCATGCCACCTATCTTGGGGGCAGTGCTGGTGAGCTCCCG
CCCATCAGGGCAGTGAAATAAATAAGCCTGTAATGTAGCTGCAACCTGCT
GCCTCTACCAGGAGAGTCCGCTGCCTTCATTTGAGAGCATGCTAGTAGAG
GCTCTGGAGATTGCTGAGGCAGCGCATGTGAGCCAAGGCGGATCAACTTT
CACCAGGTTGTATGCCACACTCTCTTGTTGCATCCCATGCCAGCTCTTAC
TCACCCCATGCCAGCTCTCACTTGTCCCAGCTCCCACGCGTCCCCTTTGC
TTCTCATATGACCTTCTCCCCTCCGCTCCCCTCCCTCCACTGCTCCCACC
TTTAAGCAGGAATCCAAGCCTCCTCCATGCTGCGGTTCGTGTGCTACATA
CCGACATCACCAATCACTTTGGGGTACAGTTCATCAACATCCGTACATGG
CCTTCCAGCAGCAATGGTTAACATGAGCCCTTAAGCAACTTCCTCGGCTC
CACCTAAACCCATATCCTCACTAATCCTAAGTTCCTTACTATTTATAGTA
AACTTACTCCTTCCTTTCCTTCCTTCTCATCCTAAGGTGAACGCGTTTGA
CTTGCGTCCCAACAGTGCAGCTGTGCACTGTGACTTGCCATGCCTACTGG
CATATGGCTCTGCTGAAGCAGCTGGGTAAGCGCCTGGCCTCAAAGACAAG
CTTGTCCCTTACCCTCTCTCTCTTCATAGTCCTCTTGTCATACCAGCTGC
TTCTCCAACCATGACCTTTCAGCTACTCACCTGCAAGCTACCCAGCATCT
CATATCAGTGCAGACGTAACGTTTATTTGTGACCTTAACCCTAACCCCAC
ATCACTACCAAGACTGACACCACTGGCACTGGCACTGGCACTGACGTGAA
ACACTGACAGCTCTGCTCATCGAACACCTTGAATAACATTGATCTCAGGC
CAAATGAAGTGAGCGCAGCATATGGCGGGCAACTGACGGAGGTTCACCTG
GACCATGGGCGTGACGCAGCACACCGGAGTCTGGTGAGGGAGGCCGTAGC
CTTTGTGTCGGAGCTGCTCAAGGCCAGGGAGAAAGCAAAGGCAGAGGCTG
AGGCTGATGGGGTGGCTGGGCAGCTCGACGTGCAGGAGCATCCTCCCTTG
TCTAAGAAGGAGGGAGTGAGATGCAGGTGAGGCCTGTTGCAACGCTTCTT
ACTGACTGTGTTGCTGAGCTGTGTAGGATGATGCCTTAGATACGTATGGT
GGTGACTGAGCTGTGCCAATGGCAGTGGCACCAGAGTGCGAGTAGTACCA
GTAGTACCAGTAGCTGTTAAGCAGGCTCATATGAGTGGGCTGCAGCTAAT
GGGGCTCCTTCCTTGCTCTCCTTACCTTTTGCTCTGGTTTGGCCAGGCTG
GCTAAGATCATGAAAAGGAAGCCAAAGAGAAAGCTGAGCCCCAGCCGTAC
CACCACAGCAGGTTCGCTCAACCCAGAACCACAGAGCAGTGTCAAATGGC
AGTAGCCTATGAACGATGTTGGGCTGATGTGCTGCTTACTTATCCTCTCC
ACTTCCCTTTTGCTCTAGGGCTTGCATCACATCCAGGCTTCAATTTGGCG
GTTGGAGCCGGCCATGCAAGCAGTGGTGACTTACCCACTCTCTCGGCCTT
AGCTGTTGAAGTCAGGTACATCAGCCAGCAGCTGCAGGTAAGTGAAACTC
TGTCCTTCACCATAGCCCTCACCCCGACCCTCACCCTCGCCATGAAGAAA
CCCTTTTATTCATGCTAGGGCTTTCATCTTGCTTAAGATCTTTAACAAGC
ATAATTTTCACCTTACTGCATGCCTGCCTGGGTTATTCCCAGGGTGGTGA
CCTAGGCAGTGATGCATGCAAGGCGTTGATAGAGCCAGGTCCTTTAGGCC
CTCTGGACCCTCTGAACGAGTCTGATGAGGCAAAGAGAGTAGAACAAAGA
GCATCCGAGGAGGTATGGAGACTCTGGCTTGGCGAATGTAGTTGTCTATT
GTTTCTTCTCTTCTCATACCTGGACCCAACCTGATCATGCCTGACATGAC
CTGCAGGAGCTGTGGGACTATGACGATCTGTGCCCTCCGAGCCCCTCCGT
GGTGATGAACACCTCTGGAGTCTCGGCTATATTTGATCTCGAGGTACTTT
GGTCCCTTTGCTGGATAACTCTGTCAGGGGCACTCCCTCATCCCACTTTT
CACACTGTTCAACTCGGCTCACCTCAGCTCAAACTCCATTGATCTGAATA
CACTCAAGTGAATCACCCAATCACCTACCCTTCTGCTCCCAAGGATATGG
AGCAAACAGATAGACTCCCAACACGGCTATTCACCGACCATCCAGAGGAC
TCCATCTGGGTGCAAGATGATAAACTCAGTCAAGACTTGCAGCTTCCCAG
AACAGGCTCAGCAGCCACACAGGTATGAGGCAGCACAAAGCACGCAACAT
GCTGTTACCCAAAGCTGCTCCTCAAGCATGAAGGCTACACTCGCACTGCC
TAAGCTCTCCACTGATGACTGACTACTTCACTGACTGATGCTTGGCCTTG
CAGATACTGGAGTACACAGGCACAGGCAGGCACGCCAGCTTCCTGAGCGA
TGAGGGGCTTACGTTGGAGGACGATAGTGAGGCAAAGCATGGAGGGGAGG
AGGGGAGACAGAAGAGCCGACAGAGGCACCATAAGCCAAAGGCCCAAGTC
TCTTTACTGGCTCAGGCTGCTGCTGCCAGGTGATCTAACAGTGACTGGTC
TTGCCCTGCCTTGACTAAGCGGTCTCTGGAATACAAACCTGGGGCAATAG
CCGGCAATACCCGGCTAATCTTCAACTCCTCTGCCACTAAACCCAGGGGC
ATGGAGAGCAGCAAAGGGATGGAGCAGGCAAGGCAAAGGAAGCCCTCGCT
GGACTCGCTCGAATCCTCCGAGTCAACGGCCACGGATGACTTGGACCAGT
TCAGCTGCTCCCCTCCCTCTCACATGGCACCCAAGCCGCCTCACTCGACT
GCGACTTCTGGCTGTGGAGGCCTGGCTGAGTGTGATGCTCCCGCACATCC
TCACCTTGTGGATGAGCAAGAGAGCCCCCACATCATGGTCAAGTGCCTGG
ACACAGGGTAAGACCTCTTGAGCTCTCGCTGGAGCCACTCTTTCATAGGC
CCTTCCCATTTTCTCATACAAGACTCGTAGACTAAACTCAACCCCCACCG
CCCCCCAACAGGGAAGAGATACCGCTGTCCCAGAGCGTTTGCAGGATCCC
GTCCACTACTACCATGCTGCCTCT
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Coding sequence (CDS) from alignment at C-australica_Contig_1019:3317..8090+

>mRNA_C-australica_Contig_1019.3.1 ID=mRNA_C-australica_Contig_1019.3.1|Name=mRNA_C-australica_Contig_1019.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=2073bp|location=Sequence derived from alignment at C-australica_Contig_1019:3317..8090+ (Chrysoparadoxa australica CS_1217)
ATGCCTACGCCAGAGTATGAGGAGCAGGCAGCCGAGACTCAAGCGAGCAT
CACTTCTTGCATGGAGGGTGTGGTGGAGGCTATGATGATCAATCCCGTCA
GTCCTAAGAAAAAGTCCCGGAGACGAAGGCCCTCCAGCAGCGATAGCCCC
ATTAGCAACAGCAAGGTGTTGGGACCGAAGAGGTTCAGCTACGGCTACAC
CACCTACATCAGGGAAGACCTTGCGATACAGGGTCAGAGCACTGAGTCGT
ATGTGAGTGAGCCAACCACGACATACGCTTGGTGGTGGAGGCAAAGGAAT
CGCACAAAGGGCGAGCTTGAGCCATGTGTGCTGTACTGCTCAGCTGCTGC
TGGGGTAGCAGGGGCAAAGGAGGCAAGAAAGGCCCTCTGTCCCCTACTAG
CAGCTGGCCTCTCTGTTATGGCACTTGATCTCTGGTCCTATGGGGCTCCC
CTGACACTTGGGGTGGGCGAGCGGCAGCATATTGCCAACGCGCTGTTCTT
CCTCAAGGAGAGAGGCGTAACTGAGGTGACCCTATGGGGACACGGTGCAG
GAGCCTCCACCGTGCTGTGGTATATGTCATCTGCCGGTGACAACTGGGAA
AAGGACTGCATGCCACCTATCTTGGGGGCAGTGCTGGAGAGTCCGCTGCC
TTCATTTGAGAGCATGCTAGTAGAGGCTCTGGAGATTGCTGAGGCAGCGC
ATGTGAGCCAAGGCGGATCAACTTTCACCAGGAATCCAAGCCTCCTCCAT
GCTGCGGTTCGTGTGCTACATACCGACATCACCAATCACTTTGGGGTGAA
CGCGTTTGACTTGCGTCCCAACAGTGCAGCTGTGCACTGTGACTTGCCAT
GCCTACTGGCATATGGCTCTGCTGAAGCAGCTGGGCCAAATGAAGTGAGC
GCAGCATATGGCGGGCAACTGACGGAGGTTCACCTGGACCATGGGCGTGA
CGCAGCACACCGGAGTCTGGTGAGGGAGGCCGTAGCCTTTGTGTCGGAGC
TGCTCAAGGCCAGGGAGAAAGCAAAGGCAGAGGCTGAGGCTGATGGGGTG
GCTGGGCAGCTCGACGTGCAGGAGCATCCTCCCTTGTCTAAGAAGGAGGG
AGTGAGATGCAGGCTGGCTAAGATCATGAAAAGGAAGCCAAAGAGAAAGC
TGAGCCCCAGCCGTACCACCACAGCAGGGCTTGCATCACATCCAGGCTTC
AATTTGGCGGTTGGAGCCGGCCATGCAAGCAGTGGTGACTTACCCACTCT
CTCGGCCTTAGCTGTTGAAGTCAGGTACATCAGCCAGCAGCTGCAGGGTG
GTGACCTAGGCAGTGATGCATGCAAGGCGTTGATAGAGCCAGGTCCTTTA
GGCCCTCTGGACCCTCTGAACGAGTCTGATGAGGCAAAGAGAGTAGAACA
AAGAGCATCCGAGGAGGAGCTGTGGGACTATGACGATCTGTGCCCTCCGA
GCCCCTCCGTGGTGATGAACACCTCTGGAGTCTCGGCTATATTTGATCTC
GAGGATATGGAGCAAACAGATAGACTCCCAACACGGCTATTCACCGACCA
TCCAGAGGACTCCATCTGGGTGCAAGATGATAAACTCAGTCAAGACTTGC
AGCTTCCCAGAACAGGCTCAGCAGCCACACAGATACTGGAGTACACAGGC
ACAGGCAGGCACGCCAGCTTCCTGAGCGATGAGGGGCTTACGTTGGAGGA
CGATAGTGAGGCAAAGCATGGAGGGGAGGAGGGGAGACAGAAGAGCCGAC
AGAGGCACCATAAGCCAAAGGCCCAAGTCTCTTTACTGGCTCAGGCTGCT
GCTGCCAGGGGCATGGAGAGCAGCAAAGGGATGGAGCAGGCAAGGCAAAG
GAAGCCCTCGCTGGACTCGCTCGAATCCTCCGAGTCAACGGCCACGGATG
ACTTGGACCAGTTCAGCTGCTCCCCTCCCTCTCACATGGCACCCAAGCCG
CCTCACTCGACTGCGACTTCTGGCTGTGGAGGCCTGGCTGAGTGTGATGC
TCCCGCACATCCTCACCTTGTGGATGAGCAAGAGAGCCCCCACATCATGG
TCAAGTGCCTGGACACAGGGTAA
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