mRNA_C-australica_Contig_10184.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10184.2.1
Unique NamemRNA_C-australica_Contig_10184.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10184.2.1 vs. uniprot
Match: A0A2E2B3B3_9BACT (LacI family transcriptional regulator n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2E2B3B3_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 3.020e-20
Identity = 44/52 (84.62%), Postives = 49/52 (94.23%), Query Frame = 1
Query:   13 KNMTIKDIARLANVSPGTVDRVIHNRGKVSDKAYAKVSVVLEEIQYKPNEFS 168
            K +TIKDIA++ANVSPGTVDRVIHNRGKVSDKA AKVSV+LEEIQYKPN F+
Sbjct:    4 KQITIKDIAKMANVSPGTVDRVIHNRGKVSDKAMAKVSVILEEIQYKPNVFA 55          
BLAST of mRNA_C-australica_Contig_10184.2.1 vs. uniprot
Match: A0A5C6HMD6_9BACT (Substrate-binding domain-containing protein n=1 Tax=Bacteroidaceae bacterium HV4-6-C5C TaxID=2600309 RepID=A0A5C6HMD6_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 3.990e-15
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1
Query:    7 ENKNMTIKDIARLANVSPGTVDRVIHNRGKVSDKAYAKVSVVLEEIQYKPNEFS 168
            ENKN TIKDIARLA VS GTVDRV+HNRG VS+ +  KV  VL+EI YKPN F+
Sbjct:    2 ENKNYTIKDIARLAGVSAGTVDRVLHNRGDVSESSRIKVQTVLDEIDYKPNMFA 55          
BLAST of mRNA_C-australica_Contig_10184.2.1 vs. uniprot
Match: A0A5E7XQV8_9BACT (LacI family transcriptional regulator n=1 Tax=Imperialibacter sp. EC-SDR9 TaxID=2038371 RepID=A0A5E7XQV8_9BACT)

HSP 1 Score: 76.3 bits (186), Expect = 5.570e-15
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 1
Query:    7 ENKNMTIKDIARLANVSPGTVDRVIHNRGKVSDKAYAKVSVVLEEIQYKPN 159
            ENKN+ IKDIARLA VS GTVDRV+H RGKVSDKA  KV  +L++I YKPN
Sbjct:    2 ENKNIRIKDIARLAGVSVGTVDRVLHKRGKVSDKALEKVHAILDQIDYKPN 52          
BLAST of mRNA_C-australica_Contig_10184.2.1 vs. uniprot
Match: UPI001C67FC37 (LacI family DNA-binding transcriptional regulator n=1 Tax=Muricauda sp. W52 TaxID=2864871 RepID=UPI001C67FC37)

HSP 1 Score: 75.1 bits (183), Expect = 1.360e-14
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 1
Query:   13 KNMTIKDIARLANVSPGTVDRVIHNRGKVSDKAYAKVSVVLEEIQYKPN 159
            K +TIKDIARLA+VS GTVDRVIHNRGKVS KA+ +V  V+EE+QYKPN
Sbjct:    3 KKITIKDIARLADVSIGTVDRVIHNRGKVSQKAHDRVHQVMEELQYKPN 51          
BLAST of mRNA_C-australica_Contig_10184.2.1 vs. uniprot
Match: UPI000646D910 (substrate-binding domain-containing protein n=1 Tax=Cellulophaga sp. Hel_I_12 TaxID=1249972 RepID=UPI000646D910)

HSP 1 Score: 74.3 bits (181), Expect = 2.650e-14
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 1
Query:   13 KNMTIKDIARLANVSPGTVDRVIHNRGKVSDKAYAKVSVVLEEIQYKPN 159
            KN TIKDIA+LA+VS GTVDRV+HNRGKVS  A  KV+VVL EI YKPN
Sbjct:    2 KNYTIKDIAKLADVSKGTVDRVLHNRGKVSQNALDKVNVVLSEIDYKPN 50          
BLAST of mRNA_C-australica_Contig_10184.2.1 vs. uniprot
Match: A0A069D4F3_9BACE (Uncharacterized protein n=1 Tax=Bacteroides graminisolvens DSM 19988 = JCM 15093 TaxID=1121097 RepID=A0A069D4F3_9BACE)

HSP 1 Score: 68.9 bits (167), Expect = 2.920e-14
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    7 ENKNMTIKDIARLANVSPGTVDRVIHNRGKVSDKAYAKVSVVLEEIQYKPNEFS 168
            + KN TIKDIAR+A VS GTVDRV+HNRG+VS+    KV  VL+EI Y PN F+
Sbjct:    2 DKKNYTIKDIARMAGVSAGTVDRVMHNRGEVSEATLKKVQKVLKEIDYHPNMFA 55          
BLAST of mRNA_C-australica_Contig_10184.2.1 vs. uniprot
Match: UPI00122EE975 (LacI family transcriptional regulator n=1 Tax=Bacteroides caccae TaxID=47678 RepID=UPI00122EE975)

HSP 1 Score: 73.2 bits (178), Expect = 3.680e-14
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1
Query:    7 ENKNMTIKDIARLANVSPGTVDRVIHNRGKVSDKAYAKVSVVLEEIQYKPNEFS 168
            E++N TIKDIAR+A VS GTVDRV+HNRG VS K+ AKV  VL+EI Y+PN F+
Sbjct:    2 EDQNYTIKDIARMAGVSAGTVDRVLHNRGDVSSKSKAKVQKVLDEIHYQPNVFA 55          
BLAST of mRNA_C-australica_Contig_10184.2.1 vs. uniprot
Match: I9UVM2_9BACE (HTH lacI-type domain-containing protein n=72 Tax=Bacteroidaceae TaxID=815 RepID=I9UVM2_9BACE)

HSP 1 Score: 72.8 bits (177), Expect = 1.040e-13
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1
Query:    7 ENKNMTIKDIARLANVSPGTVDRVIHNRGKVSDKAYAKVSVVLEEIQYKPNEFS 168
            E++N TIKDIAR+A VS GTVDRV+HNRG VS K+ AKV  VL+EI Y+PN F+
Sbjct:    2 EDQNYTIKDIARMAGVSAGTVDRVLHNRGDVSPKSKAKVQKVLDEIHYQPNVFA 55          
BLAST of mRNA_C-australica_Contig_10184.2.1 vs. uniprot
Match: A0A5C6Y721_9FLAO (Substrate-binding domain-containing protein n=1 Tax=Polaribacter sp. IC066 TaxID=57032 RepID=A0A5C6Y721_9FLAO)

HSP 1 Score: 72.4 bits (176), Expect = 1.330e-13
Identity = 37/49 (75.51%), Postives = 38/49 (77.55%), Query Frame = 1
Query:   13 KNMTIKDIARLANVSPGTVDRVIHNRGKVSDKAYAKVSVVLEEIQYKPN 159
            K  TIKDIA LA VS GTVDRVIH RGKVS KAY KV+ VL EI YKPN
Sbjct:    2 KKYTIKDIAELAGVSKGTVDRVIHKRGKVSAKAYEKVNAVLNEIDYKPN 50          
BLAST of mRNA_C-australica_Contig_10184.2.1 vs. uniprot
Match: A0A840CLB0_9BACT (LacI family transcriptional regulator n=1 Tax=Dysgonomonas hofstadii TaxID=637886 RepID=A0A840CLB0_9BACT)

HSP 1 Score: 72.4 bits (176), Expect = 1.410e-13
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 1
Query:    1 MNENKNMTIKDIARLANVSPGTVDRVIHNRGKVSDKAYAKVSVVLEEIQYKPN 159
            M EN+N+ I DIA+LA VSPGTVDRV+HNRGKVS +  AKV  VL+EI Y+PN
Sbjct:    1 MKENENIRIIDIAKLAEVSPGTVDRVLHNRGKVSPEKRAKVEKVLKEINYEPN 53          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10184.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E2B3B3_9BACT3.020e-2084.62LacI family transcriptional regulator n=1 Tax=Phyc... [more]
A0A5C6HMD6_9BACT3.990e-1570.37Substrate-binding domain-containing protein n=1 Ta... [more]
A0A5E7XQV8_9BACT5.570e-1572.55LacI family transcriptional regulator n=1 Tax=Impe... [more]
UPI001C67FC371.360e-1475.51LacI family DNA-binding transcriptional regulator ... [more]
UPI000646D9102.650e-1475.51substrate-binding domain-containing protein n=1 Ta... [more]
A0A069D4F3_9BACE2.920e-1462.96Uncharacterized protein n=1 Tax=Bacteroides gramin... [more]
UPI00122EE9753.680e-1466.67LacI family transcriptional regulator n=1 Tax=Bact... [more]
I9UVM2_9BACE1.040e-1366.67HTH lacI-type domain-containing protein n=72 Tax=B... [more]
A0A5C6Y721_9FLAO1.330e-1375.51Substrate-binding domain-containing protein n=1 Ta... [more]
A0A840CLB0_9BACT1.410e-1367.92LacI family transcriptional regulator n=1 Tax=Dysg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10184contigC-australica_Contig_10184:662..829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog411901.BACCAC_00627
PFAMsLacI,Peripla_BP_4
Model size168
Max annot lvl976|Bacteroidetes
KEGG koko:K02529
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.2e-14
EggNOG OGsCOG1879@1|root,COG1879@2|Bacteria,4NIC9@976|Bacteroidetes,2G054@200643|Bacteroidia,4APPK@815|Bacteroidaceae
DescriptionPsort location Cytoplasmic, score
Cds size168
COG categoryK
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586753.2556002-CDS-C-australica_Contig_10184:661..8291682586753.2556002-CDS-C-australica_Contig_10184:661..829Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10184 662..829 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10184.2.1prot_C-australica_Contig_10184.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10184 662..829 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10184.2.1

>prot_C-australica_Contig_10184.2.1 ID=prot_C-australica_Contig_10184.2.1|Name=mRNA_C-australica_Contig_10184.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=56bp
MNENKNMTIKDIARLANVSPGTVDRVIHNRGKVSDKAYAKVSVVLEEIQY
KPNEFS
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mRNA from alignment at C-australica_Contig_10184:662..829+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10184.2.1 ID=mRNA_C-australica_Contig_10184.2.1|Name=mRNA_C-australica_Contig_10184.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=168bp|location=Sequence derived from alignment at C-australica_Contig_10184:662..829+ (Chrysoparadoxa australica CS_1217)
ATGAATGAGAATAAAAACATGACCATTAAAGACATTGCCAGGTTGGCCAA TGTTTCTCCTGGCACCGTCGACAGAGTCATTCATAATCGGGGTAAGGTTT CTGACAAGGCCTATGCGAAGGTTAGTGTAGTCTTAGAAGAAATACAATAC AAGCCGAATGAGTTTTCG
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Coding sequence (CDS) from alignment at C-australica_Contig_10184:662..829+

>mRNA_C-australica_Contig_10184.2.1 ID=mRNA_C-australica_Contig_10184.2.1|Name=mRNA_C-australica_Contig_10184.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=168bp|location=Sequence derived from alignment at C-australica_Contig_10184:662..829+ (Chrysoparadoxa australica CS_1217)
ATGAATGAGAATAAAAACATGACCATTAAAGACATTGCCAGGTTGGCCAA
TGTTTCTCCTGGCACCGTCGACAGAGTCATTCATAATCGGGGTAAGGTTT
CTGACAAGGCCTATGCGAAGGTTAGTGTAGTCTTAGAAGAAATACAATAC
AAGCCGAATGAGTTTTCG
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