mRNA_C-australica_Contig_10184.2.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10184.2.1 vs. uniprot
Match: A0A2E2B3B3_9BACT (LacI family transcriptional regulator n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2E2B3B3_9BACT) HSP 1 Score: 90.5 bits (223), Expect = 3.020e-20 Identity = 44/52 (84.62%), Postives = 49/52 (94.23%), Query Frame = 1 Query: 13 KNMTIKDIARLANVSPGTVDRVIHNRGKVSDKAYAKVSVVLEEIQYKPNEFS 168 K +TIKDIA++ANVSPGTVDRVIHNRGKVSDKA AKVSV+LEEIQYKPN F+ Sbjct: 4 KQITIKDIAKMANVSPGTVDRVIHNRGKVSDKAMAKVSVILEEIQYKPNVFA 55
BLAST of mRNA_C-australica_Contig_10184.2.1 vs. uniprot
Match: A0A5C6HMD6_9BACT (Substrate-binding domain-containing protein n=1 Tax=Bacteroidaceae bacterium HV4-6-C5C TaxID=2600309 RepID=A0A5C6HMD6_9BACT) HSP 1 Score: 76.6 bits (187), Expect = 3.990e-15 Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1 Query: 7 ENKNMTIKDIARLANVSPGTVDRVIHNRGKVSDKAYAKVSVVLEEIQYKPNEFS 168 ENKN TIKDIARLA VS GTVDRV+HNRG VS+ + KV VL+EI YKPN F+ Sbjct: 2 ENKNYTIKDIARLAGVSAGTVDRVLHNRGDVSESSRIKVQTVLDEIDYKPNMFA 55
BLAST of mRNA_C-australica_Contig_10184.2.1 vs. uniprot
Match: A0A5E7XQV8_9BACT (LacI family transcriptional regulator n=1 Tax=Imperialibacter sp. EC-SDR9 TaxID=2038371 RepID=A0A5E7XQV8_9BACT) HSP 1 Score: 76.3 bits (186), Expect = 5.570e-15 Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 1 Query: 7 ENKNMTIKDIARLANVSPGTVDRVIHNRGKVSDKAYAKVSVVLEEIQYKPN 159 ENKN+ IKDIARLA VS GTVDRV+H RGKVSDKA KV +L++I YKPN Sbjct: 2 ENKNIRIKDIARLAGVSVGTVDRVLHKRGKVSDKALEKVHAILDQIDYKPN 52
BLAST of mRNA_C-australica_Contig_10184.2.1 vs. uniprot
Match: UPI001C67FC37 (LacI family DNA-binding transcriptional regulator n=1 Tax=Muricauda sp. W52 TaxID=2864871 RepID=UPI001C67FC37) HSP 1 Score: 75.1 bits (183), Expect = 1.360e-14 Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 1 Query: 13 KNMTIKDIARLANVSPGTVDRVIHNRGKVSDKAYAKVSVVLEEIQYKPN 159 K +TIKDIARLA+VS GTVDRVIHNRGKVS KA+ +V V+EE+QYKPN Sbjct: 3 KKITIKDIARLADVSIGTVDRVIHNRGKVSQKAHDRVHQVMEELQYKPN 51
BLAST of mRNA_C-australica_Contig_10184.2.1 vs. uniprot
Match: UPI000646D910 (substrate-binding domain-containing protein n=1 Tax=Cellulophaga sp. Hel_I_12 TaxID=1249972 RepID=UPI000646D910) HSP 1 Score: 74.3 bits (181), Expect = 2.650e-14 Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 1 Query: 13 KNMTIKDIARLANVSPGTVDRVIHNRGKVSDKAYAKVSVVLEEIQYKPN 159 KN TIKDIA+LA+VS GTVDRV+HNRGKVS A KV+VVL EI YKPN Sbjct: 2 KNYTIKDIAKLADVSKGTVDRVLHNRGKVSQNALDKVNVVLSEIDYKPN 50
BLAST of mRNA_C-australica_Contig_10184.2.1 vs. uniprot
Match: A0A069D4F3_9BACE (Uncharacterized protein n=1 Tax=Bacteroides graminisolvens DSM 19988 = JCM 15093 TaxID=1121097 RepID=A0A069D4F3_9BACE) HSP 1 Score: 68.9 bits (167), Expect = 2.920e-14 Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 1 Query: 7 ENKNMTIKDIARLANVSPGTVDRVIHNRGKVSDKAYAKVSVVLEEIQYKPNEFS 168 + KN TIKDIAR+A VS GTVDRV+HNRG+VS+ KV VL+EI Y PN F+ Sbjct: 2 DKKNYTIKDIARMAGVSAGTVDRVMHNRGEVSEATLKKVQKVLKEIDYHPNMFA 55
BLAST of mRNA_C-australica_Contig_10184.2.1 vs. uniprot
Match: UPI00122EE975 (LacI family transcriptional regulator n=1 Tax=Bacteroides caccae TaxID=47678 RepID=UPI00122EE975) HSP 1 Score: 73.2 bits (178), Expect = 3.680e-14 Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1 Query: 7 ENKNMTIKDIARLANVSPGTVDRVIHNRGKVSDKAYAKVSVVLEEIQYKPNEFS 168 E++N TIKDIAR+A VS GTVDRV+HNRG VS K+ AKV VL+EI Y+PN F+ Sbjct: 2 EDQNYTIKDIARMAGVSAGTVDRVLHNRGDVSSKSKAKVQKVLDEIHYQPNVFA 55
BLAST of mRNA_C-australica_Contig_10184.2.1 vs. uniprot
Match: I9UVM2_9BACE (HTH lacI-type domain-containing protein n=72 Tax=Bacteroidaceae TaxID=815 RepID=I9UVM2_9BACE) HSP 1 Score: 72.8 bits (177), Expect = 1.040e-13 Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1 Query: 7 ENKNMTIKDIARLANVSPGTVDRVIHNRGKVSDKAYAKVSVVLEEIQYKPNEFS 168 E++N TIKDIAR+A VS GTVDRV+HNRG VS K+ AKV VL+EI Y+PN F+ Sbjct: 2 EDQNYTIKDIARMAGVSAGTVDRVLHNRGDVSPKSKAKVQKVLDEIHYQPNVFA 55
BLAST of mRNA_C-australica_Contig_10184.2.1 vs. uniprot
Match: A0A5C6Y721_9FLAO (Substrate-binding domain-containing protein n=1 Tax=Polaribacter sp. IC066 TaxID=57032 RepID=A0A5C6Y721_9FLAO) HSP 1 Score: 72.4 bits (176), Expect = 1.330e-13 Identity = 37/49 (75.51%), Postives = 38/49 (77.55%), Query Frame = 1 Query: 13 KNMTIKDIARLANVSPGTVDRVIHNRGKVSDKAYAKVSVVLEEIQYKPN 159 K TIKDIA LA VS GTVDRVIH RGKVS KAY KV+ VL EI YKPN Sbjct: 2 KKYTIKDIAELAGVSKGTVDRVIHKRGKVSAKAYEKVNAVLNEIDYKPN 50
BLAST of mRNA_C-australica_Contig_10184.2.1 vs. uniprot
Match: A0A840CLB0_9BACT (LacI family transcriptional regulator n=1 Tax=Dysgonomonas hofstadii TaxID=637886 RepID=A0A840CLB0_9BACT) HSP 1 Score: 72.4 bits (176), Expect = 1.410e-13 Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 1 Query: 1 MNENKNMTIKDIARLANVSPGTVDRVIHNRGKVSDKAYAKVSVVLEEIQYKPN 159 M EN+N+ I DIA+LA VSPGTVDRV+HNRGKVS + AKV VL+EI Y+PN Sbjct: 1 MKENENIRIIDIAKLAEVSPGTVDRVLHNRGKVSPEKRAKVEKVLKEINYEPN 53 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10184.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10184.2.1 >prot_C-australica_Contig_10184.2.1 ID=prot_C-australica_Contig_10184.2.1|Name=mRNA_C-australica_Contig_10184.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=56bp MNENKNMTIKDIARLANVSPGTVDRVIHNRGKVSDKAYAKVSVVLEEIQYback to top mRNA from alignment at C-australica_Contig_10184:662..829+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10184.2.1 ID=mRNA_C-australica_Contig_10184.2.1|Name=mRNA_C-australica_Contig_10184.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=168bp|location=Sequence derived from alignment at C-australica_Contig_10184:662..829+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10184:662..829+ >mRNA_C-australica_Contig_10184.2.1 ID=mRNA_C-australica_Contig_10184.2.1|Name=mRNA_C-australica_Contig_10184.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=168bp|location=Sequence derived from alignment at C-australica_Contig_10184:662..829+ (Chrysoparadoxa australica CS_1217)back to top |