mRNA_C-australica_Contig_1018.7.2 (mRNA) Chrysoparadoxa australica CS_1217
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Overview
Homology
BLAST of mRNA_C-australica_Contig_1018.7.2 vs. uniprot
Match: A0A835ZE93_9STRA (BED-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE93_9STRA) HSP 1 Score: 153 bits (386), Expect = 1.530e-37 Identity = 67/101 (66.34%), Postives = 86/101 (85.15%), Query Frame = 2
Query: 8 KKKPAEADDQSQLLWCFYCDREFEHEAVLIQHQKAKHFKCLMCTKKLSTASGLLIHCKQVHKESISIVQNAKEGRESIEFEVYGMEGIPPEFIAERALKRA 310
KKK + +++ + WCFYCDR F+HE VLIQHQKAKHFKCL+C KKL+TA GL++HC+QVHKE+++ VQNAKEGRES E+E++GMEGIP E IAERA ++A
Sbjct: 3 KKKKQKVEEEKEQPWCFYCDRVFDHEEVLIQHQKAKHFKCLVCNKKLTTAGGLVVHCQQVHKETVTQVQNAKEGRESAEYEIFGMEGIPAEAIAERAARKA 103
BLAST of mRNA_C-australica_Contig_1018.7.2 vs. uniprot
Match: A0A8B8N7B5_9MYRT (protein SUPPRESSOR OF FRI 4-like n=1 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8N7B5_9MYRT) HSP 1 Score: 127 bits (318), Expect = 6.670e-32 Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = 2
Query: 5 KKKKPAEADDQSQLLWCFYCDREFEHEAVLIQHQKAKHFKCLMCTKKLSTASGLLIHCKQVHKESISIVQNAKEGRESIEFEVYGMEGIPPEFIA 289
KKKK A S +WC+YCDREF+ E +L+QHQKAKHFKC C KKLSTASG+ IH QVHKE+I V NAK GRES E E+YGM+GIPP+ +A
Sbjct: 3 KKKKRA-----SSKVWCYYCDREFDDEKILVQHQKAKHFKCHACHKKLSTASGMAIHVLQVHKEAIIKVPNAKPGRESTEIEIYGMQGIPPDVLA 92
BLAST of mRNA_C-australica_Contig_1018.7.2 vs. uniprot
Match: A0A6H5KJ22_9PHAE (BED-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ22_9PHAE) HSP 1 Score: 133 bits (334), Expect = 6.930e-32 Identity = 62/103 (60.19%), Postives = 79/103 (76.70%), Query Frame = 2
Query: 5 KKKKPAEADDQSQLLWCFYCDREFEHEAVLIQHQKAKHFKCLMCTKKLSTASGLLIHCKQVHKESISIVQNAKEGRESIEFEVYGMEGIPPEFIAERALKRAK 313
KKKK A D+++ WC+YCDR FEHE VLI HQK KH C+ C KKLSTA GL++H +QVH+E+IS V NAKEGR+S++ E+YG+ GIP E AERA K+A+
Sbjct: 3 KKKKQKVAKDETEA-WCYYCDRVFEHEEVLILHQKTKHLSCMFCKKKLSTAGGLVVHAQQVHRETISEVPNAKEGRKSVDLEIYGINGIPAEAWAERAAKKAR 104
BLAST of mRNA_C-australica_Contig_1018.7.2 vs. uniprot
Match: A0A0L0G6N8_9EUKA (BED-type domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G6N8_9EUKA) HSP 1 Score: 136 bits (342), Expect = 1.880e-31 Identity = 72/143 (50.35%), Postives = 90/143 (62.94%), Query Frame = 2
Query: 2 KKKKKPAEADDQSQLLWCFYCDREFEHEAVLIQHQKAKHFKCLMCTKKLSTASGLLIHCKQVHKESISIVQNAKEGRESIEFEVYGMEGIPPEFIAERALKRAKGPDGKPFQPPLPEQVEAKQAAGQPGYPQPGYGGTAYGMP 430
KKK KP Q WC+YCDREF+ E VLI HQKAKHFKC++C+KKL+TA G++IHC QVHKE + V NAKEGR S++ EV+GMEGIP + ++A++R P P Q KQ PG P + YGMP
Sbjct: 4 KKKSKP-------QKPWCYYCDREFDDEKVLIMHQKAKHFKCIVCSKKLNTAGGMVIHCMQVHKEQVKSVPNAKEGRTSVDLEVFGMEGIPASALQQKAVERGLAPQDGPEQ--------KKQKLDSPG---PNAQQSNYGMP 128
BLAST of mRNA_C-australica_Contig_1018.7.2 vs. uniprot
Match: A0A834FYY0_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834FYY0_RHOSS) HSP 1 Score: 125 bits (315), Expect = 1.920e-31 Identity = 58/95 (61.05%), Postives = 73/95 (76.84%), Query Frame = 2
Query: 5 KKKKPAEADDQSQLLWCFYCDREFEHEAVLIQHQKAKHFKCLMCTKKLSTASGLLIHCKQVHKESISIVQNAKEGRESIEFEVYGMEGIPPEFIA 289
KKKK A + +WC+YCDREF+ E +L+QHQKAKHFKC +C KKLSTA G++IH QVHKES+ V NAK GRES + E+YGM+GIPP+ +A
Sbjct: 3 KKKKRAALKE----VWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKESVPKVPNAKPGRESTDIEIYGMQGIPPDVLA 93
BLAST of mRNA_C-australica_Contig_1018.7.2 vs. uniprot
Match: A0A1Q3BMZ7_CEPFO (BED-type domain-containing protein (Fragment) n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3BMZ7_CEPFO) HSP 1 Score: 125 bits (315), Expect = 5.300e-31 Identity = 53/81 (65.43%), Postives = 67/81 (82.72%), Query Frame = 2
Query: 47 LWCFYCDREFEHEAVLIQHQKAKHFKCLMCTKKLSTASGLLIHCKQVHKESISIVQNAKEGRESIEFEVYGMEGIPPEFIA 289
+WC+YCDREF+ E +L+QHQKAKHFKC +C KKLSTA G+ IH QVHKES++ V NAK GRES + E+YGM+GIPP+ +A
Sbjct: 12 VWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKSGRESTDIEIYGMQGIPPDVLA 92
BLAST of mRNA_C-australica_Contig_1018.7.2 vs. uniprot
Match: T1E1I5_SILLA (C2H2-type zinc finger protein (Fragment) n=1 Tax=Silene latifolia TaxID=37657 RepID=T1E1I5_SILLA) HSP 1 Score: 124 bits (311), Expect = 5.370e-31 Identity = 54/85 (63.53%), Postives = 69/85 (81.18%), Query Frame = 2
Query: 35 QSQLLWCFYCDREFEHEAVLIQHQKAKHFKCLMCTKKLSTASGLLIHCKQVHKESISIVQNAKEGRESIEFEVYGMEGIPPEFIA 289
Q+ ++C+YCDREF+ E +L+QHQKAKHFKC C KKLSTA G++IH QVHKES++ V NAKEGRES E E+YGM+GIP + +A
Sbjct: 8 QNDKVFCYYCDREFDDEKILVQHQKAKHFKCHACNKKLSTAGGMVIHVLQVHKESVTKVPNAKEGRESTEIEIYGMQGIPADVLA 92
BLAST of mRNA_C-australica_Contig_1018.7.2 vs. uniprot
Match: A0A1V9YNY6_9STRA (C2H2-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YNY6_9STRA) HSP 1 Score: 127 bits (318), Expect = 3.540e-30 Identity = 64/118 (54.24%), Postives = 82/118 (69.49%), Query Frame = 2
Query: 2 KKKKKPAEADDQSQLLWCFYCDREFEHEAVLIQHQKAKHFKCLMCTKKLSTASGLLIHCKQVHKESISIVQNAKEGRESIEFEVYGMEGIP--PEFIAERALKRAK--GPDGKPFQPP 343
KKK+K + + ++C+YC+R FE E VLI HQK++HFKC C KKLSTASG+++HC QVHKE+I V NAK GR+S+E EVYGMEG+P E A+ KR + GP PF PP
Sbjct: 3 KKKRKDGIDEPKIAKVYCYYCERIFEDEKVLIMHQKSRHFKCNFCNKKLSTASGMVVHCAQVHKETILTVPNAKPGRDSVEIEVYGMEGVPGYAEAQAQDPSKRLRVDGPPAHPFVPP 120
BLAST of mRNA_C-australica_Contig_1018.7.2 vs. uniprot
Match: A0A2G3A9J0_CAPAN (Protein SUPPRESSOR OF FRI 4 n=4 Tax=Capsicum TaxID=4071 RepID=A0A2G3A9J0_CAPAN) HSP 1 Score: 130 bits (326), Expect = 3.730e-30 Identity = 60/95 (63.16%), Postives = 75/95 (78.95%), Query Frame = 2
Query: 5 KKKKPAEADDQSQLLWCFYCDREFEHEAVLIQHQKAKHFKCLMCTKKLSTASGLLIHCKQVHKESISIVQNAKEGRESIEFEVYGMEGIPPEFIA 289
KKKK + +D +WC+YCDREF+ E +L+QHQKAKHFKC +C KKLSTA G+ IH QVHKE++S V NAKEGRES + EVYGM+GIPP+ +A
Sbjct: 3 KKKKRSSSDK----VWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKETVSKVPNAKEGRESTDIEVYGMQGIPPDVLA 93
BLAST of mRNA_C-australica_Contig_1018.7.2 vs. uniprot
Match: A0A7S3YKR3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YKR3_HETAK) HSP 1 Score: 123 bits (308), Expect = 3.870e-30 Identity = 57/101 (56.44%), Postives = 75/101 (74.26%), Query Frame = 2
Query: 2 KKKKKPAEADDQSQLLWCFYCDREFEHEAVLIQHQKAKHFKCLMCTKKLSTASGLLIHCKQVHKESISIVQNAKEGRESIEFEVYGMEGIPPEFIAERALK 304
KKKKK A +++ WCFYC+R FE E VLIQHQK+KHFKC +C KKLSTA G+++HC QVHKE+I V NA + R++ ++E+YGMEG+P E + E K
Sbjct: 3 KKKKKTAVREEEKP--WCFYCERIFEDEKVLIQHQKSKHFKCHVCNKKLSTAGGMVVHCLQVHKETIKNVHNAIKERDTTDYEIYGMEGVPQEAVDEHRAK 101 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1018.7.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1018.7.2 >prot_C-australica_Contig_1018.7.2 ID=prot_C-australica_Contig_1018.7.2|Name=mRNA_C-australica_Contig_1018.7.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=309bp MCTKKLSTASGLLIHCKQVHKESISIVQNAKEGRESIEFEVYGMEGIPPEback to top mRNA from alignment at C-australica_Contig_1018:13532..16164+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1018.7.2 ID=mRNA_C-australica_Contig_1018.7.2|Name=mRNA_C-australica_Contig_1018.7.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2633bp|location=Sequence derived from alignment at C-australica_Contig_1018:13532..16164+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1018:13532..16164+ >mRNA_C-australica_Contig_1018.7.2 ID=mRNA_C-australica_Contig_1018.7.2|Name=mRNA_C-australica_Contig_1018.7.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=927bp|location=Sequence derived from alignment at C-australica_Contig_1018:13532..16164+ (Chrysoparadoxa australica CS_1217)back to top |