mRNA_C-australica_Contig_1018.6.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1018.6.1
Unique NamemRNA_C-australica_Contig_1018.6.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1018.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1018contigC-australica_Contig_1018:12760..13336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size298
Hectar predicted targeting categoryother localisation
Exons3
Cds size279
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586752.4009595-UTR-C-australica_Contig_1018:12759..127771682586752.4009595-UTR-C-australica_Contig_1018:12759..12777Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1018 12760..12777 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586752.409165-CDS-C-australica_Contig_1018:12777..128791682586752.409165-CDS-C-australica_Contig_1018:12777..12879Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1018 12778..12879 -
1682586752.4222474-CDS-C-australica_Contig_1018:13055..131881682586752.4222474-CDS-C-australica_Contig_1018:13055..13188Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1018 13056..13188 -
1682586752.4319506-CDS-C-australica_Contig_1018:13292..133361682586752.4319506-CDS-C-australica_Contig_1018:13292..13336Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1018 13293..13336 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1018.6.1prot_C-australica_Contig_1018.6.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1018 12778..13336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1018.6.1

>prot_C-australica_Contig_1018.6.1 ID=prot_C-australica_Contig_1018.6.1|Name=mRNA_C-australica_Contig_1018.6.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=93bp
EVVISGNSQEPGGDSASSQPIVVGNLHGSTLDYIRRWQARKEPHHWMARA
TTPREQPLKVPMLLPIVSCALTSGAEKSTSSWTCHWTLRCIC*
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mRNA from alignment at C-australica_Contig_1018:12760..13336-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1018.6.1 ID=mRNA_C-australica_Contig_1018.6.1|Name=mRNA_C-australica_Contig_1018.6.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=577bp|location=Sequence derived from alignment at C-australica_Contig_1018:12760..13336- (Chrysoparadoxa australica CS_1217)
GAAGTTGTTATTTCAGGAAATTCCCAAGAACCCGGGGGGGACAGGTTTGC
TTGCACCCATTCCTGACCACATTCGCCTTGCCAAACCACCCCCAAGCCTT
TCTTTTGGAAGTGAGCAGTGCTTGATCGATCCCCTCTCCCCACCCCAGTG
CGTCGAGCCAGCCAATTGTTGTGGGAAACTTGCACGGCTCCACTCTTGAT
TACATCAGGAGATGGCAAGCAAGAAAAGAGCCGCACCACTGGATGGCGCG
AGCCACGACTCCAAGAGAGCAGCCTTTGAAGGTGCAAACTACAAATTATT
ATTCAACAGCAACACGGCCAGCTTGTTCTGGGCTTTGCAGTCTGCAGCTT
AACCTTGAAATGTCCCCATTGGTCATGCTCAAAGAAATCCATGCATCAGC
TCCCCTTGCTATTTGCTGGACCAGCTCTTACTCTCCCAATTTTTCCCTCT
TCTGCAGGTGCCGATGCTCCTACCCATAGTCAGTTGCGCCTTGACATCAG
GAGCAGAGAAATCTACCTCTTCATGGACTTGCCACTGGACATTGAGGTGC
ATTTGTTGAGCCAGGAAGACCAGCTGT
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Coding sequence (CDS) from alignment at C-australica_Contig_1018:12760..13336-

>mRNA_C-australica_Contig_1018.6.1 ID=mRNA_C-australica_Contig_1018.6.1|Name=mRNA_C-australica_Contig_1018.6.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=279bp|location=Sequence derived from alignment at C-australica_Contig_1018:12760..13336- (Chrysoparadoxa australica CS_1217)
GAAGTTGTTATTTCAGGAAATTCCCAAGAACCCGGGGGGGACAGTGCGTC
GAGCCAGCCAATTGTTGTGGGAAACTTGCACGGCTCCACTCTTGATTACA
TCAGGAGATGGCAAGCAAGAAAAGAGCCGCACCACTGGATGGCGCGAGCC
ACGACTCCAAGAGAGCAGCCTTTGAAGGTGCCGATGCTCCTACCCATAGT
CAGTTGCGCCTTGACATCAGGAGCAGAGAAATCTACCTCTTCATGGACTT
GCCACTGGACATTGAGGTGCATTTGTTGA
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