mRNA_C-australica_Contig_1018.4.2 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1018.4.2
Unique NamemRNA_C-australica_Contig_1018.4.2
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_1018.4.2 vs. uniprot
Match: D8LJ34_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ34_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.740e-30
Identity = 83/187 (44.39%), Postives = 110/187 (58.82%), Query Frame = 3
Query:    3 PAVPQLNEGSCSFKVLLRGGAGQR-NMSRVRIFADLKLDGVTVRGSSEVLKACRAAVSVVRQPQEQWYKDEGGKHNKIEIATQVMEKAGANSSNSWIPREGVPLQVTLHYDTGFVVLDQSIMVPQRGNQLVTDKDGQALLKYRILEVSQRHQGKRFVFAIGPDTRAAPTMNDIAPVFTVPVVVLSKR 560
            P  P L +GS +F +LL  G  +  N  +V +          ++  SE +  CR+A++VV QP E WYKDEGGK+N I I   V EK  +       P  GVPL + L Y+ G  V  Q I+  Q   QLVT++ G+A LK++I EVSQRHQ +RF   I PD R AP  +++APV TVPV+VLSKR
Sbjct:  105 PQRPALLDGSTTFHLLLWEGCVRTGNRIKVHVETSSGRGREQIKADSEPIMVCRSALTVVSQPPESWYKDEGGKNNCIAIEATVREKLPSGQVGQAQP--GVPLTLALVYEAGTEVHSQEILQVQSDTQLVTNEHGRANLKFKITEVSQRHQSQRFCVKICPDVRLAPEFSNVAPVVTVPVMVLSKR 289          
BLAST of mRNA_C-australica_Contig_1018.4.2 vs. uniprot
Match: A0A485LTJ6_9STRA (Aste57867_25083 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LTJ6_9STRA)

HSP 1 Score: 112 bits (281), Expect = 3.810e-22
Identity = 88/270 (32.59%), Postives = 129/270 (47.78%), Query Frame = 3
Query:  198 WYKDEGGKHNKIEIATQVMEKAGANSSNSWIPREGVPLQVTLHYDTGFVVLDQSIMVPQRGNQLVTDKDGQALLKYRILEVSQRHQGKRFVFAIGPDTRAAPTMNDIAPVFTVPVVVLSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRGVQAPPLALIAQAPGLQPLPPLPGKPTGKAMQELMQWVAAAASMLHDTLQFQHAGYEVAEDNAVDYSLPIWRCPECRVTRDRSSPDTP-HSSQCRLGGLLDLY 1004
            WYKDEGG+   + +   +++     +SN  +    VPL+VTL Y+    VL Q I+     +Q V D +GQALLK RI +VS+ HQG+ F   + PDT  +P   D+AP ++ P+ V SKR   XXXXXXXX                                 GR  +   +       G QPL P        +M+ ++QW  +  + L   L++Q  GYE   D ++D   P++RCP C   +D  + DT  H S+C +  +L  Y
Sbjct:  142 WYKDEGGRDKCMNLPVHLVD-----ASNQTVGHRPVPLRVTLLYENEHAVLKQDILKLSPDSQRVIDSNGQALLKLRIEDVSKNHQGQAFRLKVEPDTAQSPLFFDVAPDWSTPISVRSKRNKRXXXXXXXXSSHGLGASGIDPLGPDSPRENDD---------HGRPAKRQIMTANGGGVGSQPLHP--------SMEGVLQWTGSVINGLQQ-LEWQLIGYETKLDGSLDRDRPLYRCPACWRYKDMLTMDTQQHESKCLIANVLLTY 388          
BLAST of mRNA_C-australica_Contig_1018.4.2 vs. uniprot
Match: A0A6G0WPZ0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WPZ0_9STRA)

HSP 1 Score: 108 bits (270), Expect = 7.380e-21
Identity = 84/290 (28.97%), Postives = 129/290 (44.48%), Query Frame = 3
Query:  192 EQWYKDEGGKHNKIEIATQVMEKAGANSSNSWIPREGVPLQVTLHYDTGFVVLDQSIMVPQRGNQLVTDKDGQALLKYRILEVSQRHQGKRFVFAIGPDTRAAPTMNDIAPVFTVPVVVLSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRGVQAP-PLALIAQAPGLQPLP-------PLPGK----------PTGKAMQELMQWVAAAASMLHDTLQFQHAGYEVAEDNAVDYSLPIWRCPECRVTRDRSSPDTP-HSSQCRLGGLLDLY 1004
            E WYKDEGG+   + +   +++     ++N  +PR  VPL+VTL Y++   VL Q I+     +Q + D  GQALLK RI +VS+ HQG+ F   + PDT  +P   D+AP ++ P+ V SKR                                           + RG   P P  + + + G+ PL        P P K          P   +M+ +++W ++    L   L++Q  GYE   D  +D   PI+RCP C   +D  + DT  H  +C +  +L  Y
Sbjct:  140 ELWYKDEGGRDKCMNLPVHLVD-----ATNQPVPR-AVPLRVTLLYESEHPVLKQDILKLSPDSQRLIDSHGQALLKLRIEDVSKNHQGQAFRLKVEPDTAQSPLFFDVAPDWSTPISVRSKRN------------------------------------------KRRGGPIPSPHVIASSSSGIDPLDSPREGEDPRPVKRTISPSTASGPLHPSMESILRWTSSVVQGLQQ-LEWQPIGYETRLDGGIDKDRPIYRCPACWRYKDVMTMDTQQHEGKCLIANVLLTY 380          
BLAST of mRNA_C-australica_Contig_1018.4.2 vs. uniprot
Match: A0A024TWZ7_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TWZ7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.870e-17
Identity = 79/290 (27.24%), Postives = 124/290 (42.76%), Query Frame = 3
Query:  192 EQWYKDEGGKHNKIEIATQVMEKAGANSSNSWIPREGVPLQVTLHYDTGFVVLDQSIMVPQRGNQLVTDKDGQALLKYRILEVSQRHQGKRFVFAIGPDTRAAPTMNDIAPVFTVPVVVLSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---RGRGVQAPPLALIAQAPGLQPLPPLPGKPTGKAMQELMQWVAAAASMLH--DTLQFQHAGYEVAEDNAVDYSLPIWRCPECRVTRDRSSPDTP-HSSQCRLGGLLDLYCLRVVPITASLLQ 1043
            E WYKDEGG+   + +   +++     ++N  +    VPL+VTL Y+    VL Q I+     +Q V D +G ALLK RI +VS+ HQG+ F   + PDT  +P   D+AP ++ P+ V SKR                                              R      P  +  +       L P        +M+ +++W     S++H    L++Q  GYE+  D + D   PI+RCP C   +D  + D+  H S+C +  +L  Y    V    +LL+
Sbjct:  145 ELWYKDEGGRDKCMPLPVLLVD-----ATNQPVGHRAVPLRVTLLYENEHAVLKQDILKLSPDSQRVIDNNGMALLKLRIEDVSKNHQGQAFRLKVEPDTAQSPLHFDVAPDWSTPISVRSKRNKRRNGGGTSSTSHHPLIDPLESPRGGEHGHHPGTTAFDMDSRPSKRSANGMMPSSSPTSHGGAPSTLHP--------SMESILRWTT---SVIHGFQQLEWQPIGYEMRLDGSQDKDRPIFRCPACWRYKDTMTMDSQQHESKCLIANVLLTYASDTVGHLDALLK 418          
BLAST of mRNA_C-australica_Contig_1018.4.2 vs. uniprot
Match: A0A7S4D5X0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5X0_HETAK)

HSP 1 Score: 92.4 bits (228), Expect = 8.220e-16
Identity = 72/202 (35.64%), Postives = 100/202 (49.50%), Query Frame = 3
Query:   15 QLNEGSCSFKVLLRGGAGQRNMSRVRIFADLKLDGVTVR-GSSEVLKACRAAVSVVRQPQEQWYKDEGGKHNKIEIATQVMEKAGANSSNSWIPREG------------VPLQVTLHYDTGFVVLDQSIMVPQRGNQLVTDKDGQALLKYRILEVSQRHQGKRF---VFAIGPDTRAAP----TMNDIAPVFTVPVVVLSKR 560
            +L +G C F   L G   +   + V +  D ++  V++   SSE++  C A + VV  P  +WYKDEGGK N I +  ++   AG       +P EG            VPL V L Y+ G  V  Q I+   R ++L       A L++R+ EVSQRHQG+RF   V A  P   AAP      + +APV + P  VLSKR
Sbjct:   92 ELVDGVCRFSFKL-GPNVKLAGNTVAVHVDARVADVSIPPASSELMTICSALLEVVADPPTKWYKDEGGKGNCITLNVRLKGPAGEG-----LPEEGGPAARARPAAQEVPLFVALLYEDGKAVGQQGILQLARDSRLAVGPGAPATLRFRVGEVSQRHQGQRFRIRVQATPPRPGAAPPGAAVFSRVAPVDSAPFTVLSKR 287          
BLAST of mRNA_C-australica_Contig_1018.4.2 vs. uniprot
Match: W4GFW1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GFW1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.490e-15
Identity = 96/311 (30.87%), Postives = 139/311 (44.69%), Query Frame = 3
Query:  192 EQWYKDEGGKHNKIEIATQVMEKAGANSSNSWIPREGVPLQVTLHYDTGFVVLDQSIMVPQRGNQLVTDKDGQALLKYRILEVSQRHQGKRFVFAIGPDTRAAPTMNDIAPVFTVPVVVLSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRGVQAPPLALIAQAPGLQPLPPLPGKPTGK--------AMQELMQWVAAAASMLH--DTLQFQHAGYEVAEDNAVDYSLPIWRCPECRVTRDRSSPDTP-HSSQCRLGGLLDLYCLRVVPITASLLQ----HGIAAPSPVAPA 1079
            E WYKDEGG+   + +   +++     ++N  +    VPL+VTL Y+    VL Q I+     +Q V D  G ALLK RI +VS+ HQG+ F   + PDT  +P   D+AP ++ P+ V SKR                             XXXXXXXXXXXXXX                                        +M+ +++W     S++H    L++Q  GYEV  D + D   PI+RCP C   +D  + D+  H S+C +  +L  Y    V    +LL+    +G A+  P APA
Sbjct:  146 ELWYKDEGGRDKCMPLPVHLVD-----ATNQPVGHRAVPLRVTLLYENEHAVLKQDILKLSPDSQRVIDSTGMALLKLRIEDVSKNHQGQAFRLKVEPDTTQSPLHFDVAPDWSTPISVRSKRNKRRNGGGTLSQHHAPTSSHIDPLESPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALHPSMESILRWTT---SVIHGFQQLEWQPIGYEVRLDGSQDKDRPIFRCPACWRYKDTMTMDSQQHESKCLIANVLLTYASDTVGHLDALLKLTEKYGTASSIPPAPA 448          
BLAST of mRNA_C-australica_Contig_1018.4.2 vs. uniprot
Match: A0A397AVR5_9STRA (Uncharacterized protein n=13 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AVR5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.600e-15
Identity = 97/311 (31.19%), Postives = 140/311 (45.02%), Query Frame = 3
Query:  192 EQWYKDEGGKHNKIEIATQVMEKAGANSSNSWIPREGVPLQVTLHYDTGFVVLDQSIMVPQRGNQLVTDKDGQALLKYRILEVSQRHQGKRFVFAIGPDTRAAPTMNDIAPVFTVPVVVLSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRGVQAPPLALIAQAPGLQPLPPLPGKPTGK------AMQELMQWVAAAASMLH--DTLQFQHAGYEVAEDNAVDYSLPIWRCPECRVTRDRSSPDTP-HSSQCRLGGLLDLYCLRVVPITASLLQ----HGIAA--PSPVAPA 1079
            E WYKDEGG+   + +   +++     ++N  +    VPL+VTL Y+    VL Q I+     +Q V D  G ALLK RI +VS+ HQG+ F   + PDT  +P   D+AP ++ P+ V SKR                             XXXXXXXXXXXXXX                                      +M+ +++W     S++H    L++Q  GYEV  D + D   PI+RCP C   +D  + D+  H S+C +  +L  Y    V    +LL+    +G A+  PSP  PA
Sbjct:  823 ELWYKDEGGRDKCMPLPVHLVD-----ATNQPVGHRAVPLRVTLLYENEHAVLKQDILKLSPDSQRVIDSTGMALLKLRIEDVSKNHQGQAFRLKVEPDTTQSPLHFDVAPDWSTPISVRSKRNKRRNGGGTLSQHHAPTSSHIDPLESPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSALHPSMESILRWTT---SVIHGFQQLEWQPIGYEVRLDGSQDKDRPIFRCPACWRYKDTMTMDSQQHESKCLIANVLLTYASDTVGHLDALLKLTEKYGTASSIPSPALPA 1125          
BLAST of mRNA_C-australica_Contig_1018.4.2 vs. uniprot
Match: A0A6H5JP05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP05_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.150e-13
Identity = 59/198 (29.80%), Postives = 100/198 (50.51%), Query Frame = 3
Query:    3 PAVPQLNEGS--CSFKVLLRGGAG--QRNMSRVRIFADLKLDGVTVRGSSEVLKACRAAVSVVRQPQ----EQWYKDEGGKHNKIEIATQVMEKAGANSSNSWIPREGVPLQVTLHYDTGFVVLDQSIMVPQRGNQLVTDKDGQALLKYRILEVSQRHQGKR----FVFAIGPDTRAAPTMNDIAPVFTVPVVVLSKR 560
            P  P+++ G+  CS ++ +       +R   R+++ AD + D       ++ L   R  + ++  P     +QWYKDEGG+ N +E+   ++  +G       +    VPL++ L YD    V +Q I+     ++LV D+ G+A L+ RI EVS+ HQ +     F   + PD +  P   DI+ V + P+ VLSKR
Sbjct:  102 PVAPKISNGAGKCSIRMKITDDKTTMERRRFRIKVEADGRAD--IEAALTDKLTVIRNRLEILENPDNPVPDQWYKDEGGRENCVELQVHLLGPSGEE-----VKSRRVPLRLVLMYDNMHRVQNQEILKLSPDSKLVIDEHGKATLRVRIEEVSKNHQKQATRIAFRIKVEPDVQEQPLSMDISSVVSKPITVLSKR 292          
BLAST of mRNA_C-australica_Contig_1018.4.2 vs. uniprot
Match: A0A7R9U6U2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6U2_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.260e-11
Identity = 90/366 (24.59%), Postives = 144/366 (39.34%), Query Frame = 3
Query:    9 VPQLNEGSCSFKVLLRGGAGQRNMSR------VRIFADLKLDGVT-------VRGSSEVLKACRAAVSVVRQPQE---QWYKDEGGKHNKIEIATQVMEKAGANSSNSWIPREGVPLQVTLHYDTGFVVLDQSIMVPQRGNQLVTDKDGQALLKYRILEVSQRHQGKRFVFAIGPDTRAAPTMNDIAPVFTVPVVVLSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----RGRGVQAPPLALIAQAPGLQPLPPLPGKPTGKAMQELMQWVAAAASMLHDTLQFQHAGYEV-AEDNAVDYSLPIWRCPECRVTRDRSSPDTPHSSQCRLGGLLDLYCLRVVPITASLL 1040
            + QL EG   F + L+    QR          VR++A   L G         + G S +LK C   +++     +   +WYKDEGG+ N ++I   + +  G    ++    + V + + L Y+ G  V  QSI+   +    +T++ G   +  RI+EVSQRHQGKRF+       +A  +   +A  FT PV VLSKR                                                 G+ +    L   + AP +       G     AM  +  WVA A   L +T ++    YE       +D + P+ RCP C       +P   H + C+L  +L  Y   + P  ++++
Sbjct:   85 ILQLLEGRARFTLTLQTSFLQRVRGEASAVLVVRLYAASPLLGAPEPKSEPLLTGESSLLKICDKCLTINCSENKIPGKWYKDEGGQSNCLQIEITLQDLGGRQIRDA---DKQVNVSLKLLYEDGTEVSSQSILAVAKDTYALTEQ-GYVKILARIMEVSQRHQGKRFII------KAFTSNPGVAAGFTNPVCVLSKRKRHQRKKEENEKRVKDLRRTLQQSPGVPPPAQPAYNAAGVPLGAVAASNGQSITGRALTTPSPAPAVSEFVKRDG--VRDAMSVMCSWVAQAMETLRET-EWVLVSYEQDVRTGQIDRNFPVKRCPSCHALYTIVTPKE-HKAGCKLAKVLRQYDAELRPYFSTIV 436          
BLAST of mRNA_C-australica_Contig_1018.4.2 vs. uniprot
Match: A0A225VT52_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225VT52_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.950e-11
Identity = 50/144 (34.72%), Postives = 79/144 (54.86%), Query Frame = 3
Query:  138 SEVLKACRAAVSVVRQPQEQWYKDEGGKHNKIEIATQVMEKAGANSSNSWIPREGVPLQVTLHYDTGFVVLDQSIM--VPQRGNQLVTDKDGQALLKYRILEVSQRHQGKRFVFAIGPDTRAAPTM-NDIAPVFTVPVVVLSKR 560
            S  +   +  + VV QP + W+KDEGG+   + +A  +M   GA     ++    VPL V L Y++G +VL+QSI+   P     +     G+A + +RI +VS+ HQG+ F+  IGP+ +   +M  DIAP  T  + + SKR
Sbjct:  111 SASVNVVKEKLQVVTQPPDVWFKDEGGREKCMTVALTLMPAPGA-----YLEDRVVPLDVKLLYESGNLVLNQSILRLFPDMRPNMT---HGRATISFRIDDVSKNHQGQSFMLEIGPEQQDGSSMFQDIAPTRTSVIAIRSKR 246          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1018.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ34_ECTSI1.740e-3044.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A485LTJ6_9STRA3.810e-2232.59Aste57867_25083 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0WPZ0_9STRA7.380e-2128.97Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024TWZ7_9STRA2.870e-1727.24Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]
A0A7S4D5X0_HETAK8.220e-1635.64Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W4GFW1_9STRA1.490e-1530.87Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A397AVR5_9STRA2.600e-1531.19Uncharacterized protein n=13 Tax=Aphanomyces astac... [more]
A0A6H5JP05_9PHAE2.150e-1329.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9U6U2_9STRA1.260e-1124.59Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A225VT52_9STRA4.950e-1134.72Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1018contigC-australica_Contig_1018:7807..12557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LJ34
Model size2303
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons24
Evalue2.15e-33
EggNOG OGs28NV4@1|root,2QVF4@2759|Eukaryota
Cds size1776
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1018.4.2prot_C-australica_Contig_1018.4.2Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1018 8406..12390 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586752.8663967-UTR-C-australica_Contig_1018:7806..79021682586752.8663967-UTR-C-australica_Contig_1018:7806..7902Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1018 7807..7902 -
1682586752.8749635-UTR-C-australica_Contig_1018:7972..80371682586752.8749635-UTR-C-australica_Contig_1018:7972..8037Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1018 7973..8037 -
1682586752.88337-UTR-C-australica_Contig_1018:8116..84051682586752.88337-UTR-C-australica_Contig_1018:8116..8405Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1018 8117..8405 -
1682586753.1111245-UTR-C-australica_Contig_1018:12390..124431682586753.1111245-UTR-C-australica_Contig_1018:12390..12443Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1018 12391..12443 -
1682586753.121276-UTR-C-australica_Contig_1018:12533..125571682586753.121276-UTR-C-australica_Contig_1018:12533..12557Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1018 12534..12557 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586752.8918006-CDS-C-australica_Contig_1018:8405..85071682586752.8918006-CDS-C-australica_Contig_1018:8405..8507Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1018 8406..8507 -
1682586752.9022467-CDS-C-australica_Contig_1018:8596..86861682586752.9022467-CDS-C-australica_Contig_1018:8596..8686Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1018 8597..8686 -
1682586752.9120176-CDS-C-australica_Contig_1018:8766..88531682586752.9120176-CDS-C-australica_Contig_1018:8766..8853Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1018 8767..8853 -
1682586752.9195101-CDS-C-australica_Contig_1018:8936..90171682586752.9195101-CDS-C-australica_Contig_1018:8936..9017Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1018 8937..9017 -
1682586752.9280193-CDS-C-australica_Contig_1018:9204..93501682586752.9280193-CDS-C-australica_Contig_1018:9204..9350Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1018 9205..9350 -
1682586752.9369442-CDS-C-australica_Contig_1018:9439..95191682586752.9369442-CDS-C-australica_Contig_1018:9439..9519Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1018 9440..9519 -
1682586752.9463682-CDS-C-australica_Contig_1018:9596..96681682586752.9463682-CDS-C-australica_Contig_1018:9596..9668Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1018 9597..9668 -
1682586752.9563637-CDS-C-australica_Contig_1018:9741..99571682586752.9563637-CDS-C-australica_Contig_1018:9741..9957Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1018 9742..9957 -
1682586752.971796-CDS-C-australica_Contig_1018:10124..102251682586752.971796-CDS-C-australica_Contig_1018:10124..10225Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1018 10125..10225 -
1682586752.982515-CDS-C-australica_Contig_1018:10312..103601682586752.982515-CDS-C-australica_Contig_1018:10312..10360Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1018 10313..10360 -
1682586752.9945414-CDS-C-australica_Contig_1018:10459..105481682586752.9945414-CDS-C-australica_Contig_1018:10459..10548Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1018 10460..10548 -
1682586753.010701-CDS-C-australica_Contig_1018:10672..107061682586753.010701-CDS-C-australica_Contig_1018:10672..10706Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1018 10673..10706 -
1682586753.0223029-CDS-C-australica_Contig_1018:10813..109521682586753.0223029-CDS-C-australica_Contig_1018:10813..10952Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1018 10814..10952 -
1682586753.0313926-CDS-C-australica_Contig_1018:11071..111271682586753.0313926-CDS-C-australica_Contig_1018:11071..11127Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1018 11072..11127 -
1682586753.040755-CDS-C-australica_Contig_1018:11292..113491682586753.040755-CDS-C-australica_Contig_1018:11292..11349Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1018 11293..11349 -
1682586753.0505545-CDS-C-australica_Contig_1018:11460..115411682586753.0505545-CDS-C-australica_Contig_1018:11460..11541Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1018 11461..11541 -
1682586753.0665376-CDS-C-australica_Contig_1018:11650..117241682586753.0665376-CDS-C-australica_Contig_1018:11650..11724Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1018 11651..11724 -
1682586753.0751152-CDS-C-australica_Contig_1018:11820..118721682586753.0751152-CDS-C-australica_Contig_1018:11820..11872Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1018 11821..11872 -
1682586753.0832636-CDS-C-australica_Contig_1018:11986..120351682586753.0832636-CDS-C-australica_Contig_1018:11986..12035Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1018 11987..12035 -
1682586753.0913587-CDS-C-australica_Contig_1018:12182..122711682586753.0913587-CDS-C-australica_Contig_1018:12182..12271Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1018 12183..12271 -
1682586753.101258-CDS-C-australica_Contig_1018:12357..123901682586753.101258-CDS-C-australica_Contig_1018:12357..12390Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1018 12358..12390 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1018.4.2

>prot_C-australica_Contig_1018.4.2 ID=prot_C-australica_Contig_1018.4.2|Name=mRNA_C-australica_Contig_1018.4.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=592bp
MSRVRIFADLKLDGVTVRGSSEVLKACRAAVSVVRQPQEQWYKDEGGKHN
KIEIATQVMEKAGANSSNSWIPREGVPLQVTLHYDTGFVVLDQSIMVPQR
GNQLVTDKDGQALLKYRILEVSQRHQGKRFVFAIGPDTRAAPTMNDIAPV
FTVPVVVLSKRKKKHDRDSGAGAVGAEGRGRGRKQGQAPAHKQSESPPAH
QHSNRGRGVQAPPLALIAQAPGLQPLPPLPGKPTGKAMQELMQWVAAAAS
MLHDTLQFQHAGYEVAEDNAVDYSLPIWRCPECRVTRDRSSPDTPHSSQC
RLGGLLDLYCLRVVPITASLLQHGIAAPSPVAPAPLRRALSSPRGAAVGD
MMVEAANILGALPDGTAATTLTRGDSIYHPGKLAMTLGREESWESTGPPL
RQLSQLSEAAARLQGSEGSAHSSDSEVAAAGPPPDLQGARMPSVAVFLPA
RIPPCPAELGVHYVNRRKRDGKTSGLDESGSPSGVPAFDETKTLLGFYSF
TWDGQQTNVVFRSTEEAKCSSDLQKKLQEELEAELKRPDQEVVHTLDAEQ
GLHKLKEEVFAAMEKFDAAGAFGGQGDAELGPVPTDMQIAA*
back to top

mRNA from alignment at C-australica_Contig_1018:7807..12557-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1018.4.2 ID=mRNA_C-australica_Contig_1018.4.2|Name=mRNA_C-australica_Contig_1018.4.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=4751bp|location=Sequence derived from alignment at C-australica_Contig_1018:7807..12557- (Chrysoparadoxa australica CS_1217)
TACCTGCAGTCCCGCAACTCAACGGTGAGCATTGGGTGGTGCTTGCCCTC CCACGTCCTCCATGGGCATGCTAACTGCTTACTGACTCTTTCCCCTTGGT GATGCGGTGCACAGAGGGCTCATGCAGCTTCAAAGTGTTGCTCAGGGGTG GTGCTGGACAGAGGAACATGAGCAGGGTGAGGATATTTGCAGACCTCAAG GTAAGTCACTCGTGCATTCACTTGCTCAGTCTCATGCATGTATGTTCTCT TCTCCTGCCAAAGAGGCTGACCTGACGCATCAACAGTTGGATGGAGTCAC TGTGAGAGGCAGTAGTGAAGTGCTCAAAGCATGCCGTGCTGCTGTGAGCG TGGTTCGCCAACCGCAAGAGCAATGGTAGGGGATGAGGGAAAGAGAGCAG GCAGGCAGAAAGAAAGTTTCTGCCCGCTTCCAGCCTTCTCTGCTCTGCTT CATCATCCTGACTCGTGACCTGACCTTGGCCTGGCACTTTTGAATTTTGA ACTTTTTGAACTTTTTGTACAGGTACAAAGACGAGGGAGGGAAACACAAC AAAATTGAAATAGCTACCCAGGTAGTACTTCAGCTGCCCTCTCATTTAGT GACACCCTTTCACTTTTTGCTCATCGTAATGAGTGTTTATGTTGACCCTT CATCGAGCTTACTTACTCATGGTACTGACTGGCAGGTCATGGAGAAAGCG GGTGCGAATAGCAGCAACTCCTGGATCCCGCGAGAAGGTTTGTCACTCAA CAGGAGAAAGACTCAGGCCTGCTTGCAGCCTGCTCCTCACGCAACGGTCC TCCTTCGGCTCCTTTTTTTTCTCCTTCTTCCAGGTGTGCCGCTCCAGGTC ACCCTGCACTATGACACAGGCTTTGTTGTGCTGGACCAATCCATCATGGT GCCACAGGTGAGGCAAACACTTGAAGTCCGTCGGTCCCAGTTGAGGCAGC AGCTGAGCTCACCATTGCTCTTCCTTTCACCGTTGCTGTTGCCACTGCTT AAATCCCTGATATTAGCGAGGGAATCAGCTGGTCACAGACAAGGATGGCC AAGCGCTACTCAAGTACAGGATTCTGGAAGTGTCACAACGGCATCAGGTC AACTAAGTCATCTGCTCTCGCTAATCCCAGCCTTGCTCCTTTCTCGCTGC TCCCCCTTGAGGCATTACTCTGTTCATCTAACTGTGATGATACCTTGCCT CATGACAGGGGAAGAGGTTTGTGTTTGCTATCGGTCCAGACACTCGGGCT GCGCCTACCATGAATGTAAAGTGGATGCTCTCCCCCGTATTAAACCACTC CTCTGAACTCATCGTAGTCCATTGCCATCCATTATGAAGCCTCTCCACTG CAGTCCACATAACTGGCAGGCAGGCCAGAATGCAGCAAAAGCAAAGCTCA TATACCTCCTGCGCCGATGCCTGCTCCTAGGATATTGCCCCAGTCTTCAC GGTGCCAGTGGTTGTGTTGAGTAAGCGCAAGAAGAAGTGAGTAGGCCGTC CACCTCACCACCTAATCGGCTCAGCTCATCTCACCTCAAATAAGCAAAGC AAAGAGCCCAGCAGTCAGTCACTTGCGTTACCGCCTTCTCCCCTTCCATT GCAAGGCACGACAGGGACAGTGGAGCCGGTGCAGTGGGAGCAGAGGGAAG AGGGAGAGGCCGCAAGCAGGGCCAAGCACCGGCTCACAAGCAGTCAGAGT CACCTCCGGCACACCAGCATAGTAACAGGGGAAGGGGCGTTCAGGTATAA TAACACGTGCCTTGTCTGGCTGACTCATCAAACTTATCAATTGTGACTAC TTGGCACCCGTTAACTATGGGGCTCTGACACATTTACCGGTGTTTCTGCA GGCACCGCCACTGGCTTTGATTGCGCAAGCACCAGGTAGCGTCTCAGCAC AACAATGGTGCATTGCCAACACGATATGACCCGCATCCTTTGTTTTGGAG TGGTTTGGTGCGAGAGAAGGAAAGAGCGTTCACAACTAAGCAGCTCACTT CCAACGCAGGGCTGCAGCCTCTACCTCCTCTCCCGGGCAAGCCAACCGGG AAAGCCATGCAAGAGCTGATGCAGTGGGTAGCTGCAGCTGCATCCATGGT GAGACCTTAAGGACTAGAGCCATACGCGCCACAGAGTCATTCGCTTAGCC ACCTCATGCGCCTAGCATACTCACCTCTCTTCTTCGCCCTGCTCCAGTTG CATGACACGCTACAGTTCCAGCATGCCGGGTATGAAGTCGCAGAGGTAGG GCCTTTTAACTTCCACTCTAGAGTCACGCTAGCTTGACCCTAATGTTGAC CTAGTCTTGACCTAATCAGACTCAACCTGCAGGACAATGCAGTGGATTAC TCGCTCCCTATTTGGAGATGTCCAGAGTGCAGGGTGACGCGAGATAGGTC CTCACCTGACACACCACACTCATCCCAATGCAGGTCAGTCGGTTACTCAA CTAAGCAAGCCCCATTTGTTTAGCAACCTCACGTTTGTCGACCCTTTGAC CTGGCTTGCCTTGACTTGTTTGACTGTTGCACTCAGGCATTGCATTCACA TTAACCTAACCATCACTCCTCATGCTTATTATGACGATGTTGCAAAACAG GCTTGGCGGTCTGCTGGACCTGTACTGCTTGCGCGTTGTCCCAATCACCG CCTCGTTGCTGCAGCACGGCATTGCAGCTCCTAGTCCGGTGGCTCCGGCA CCTCTGCGCAGGGCTCTATCTTCTCCAAGAGGTGCAGCTGTCGGCGACAT GATGGTGGAGGCAGCCAATATTCTAGGGGCGCTACCTGATGGAACTGCTG CTACTACTCTGACCAGGTGAGTTAGCTCTCACCCTGGGTATTTTTGTCTT ACCTCTTTGGCTTCTCACTTGCCTTTCTCCTTTTGTCAGGGGTGATAGCA TTTATCACCCTGGAAAACTAGCCATGACACTGGGAAGGGAAGAAAGCTGG GAATCCACTGGGTACACTGCTTGCTGCTTGCTCACCGTGTTTCTCTCATA ACACTAACCGTACCCTCTGCCGCTTGTTTATTTGTAAGCCCTCCTCTCAG GCAGCTCTCACAGTTGTCTGAAGCAGCTGCAAGACTGCAAGGCTCGGAAG GGTCTGCGCATAGCTCAGGTGACCCAGCGATAGTTGTCATGACTGAACAC TCTGCTGTGGGATTGAGCGACCAGCGTTTTTGCTCCTTGCTTCCTTGAAA AGAGCAGATAGCGAAGTAGCAGCAGCAGGCCCACCTCCTGATTTGCAAGG TGCCAGGATGCCAAGTGTGGCTGTGTTCCTTCCAGCAAGGATCCCTCCTT GCCCTGCTGAGCTGGGAGTGCACTATGTCAACAGGAGGAAGAGGGATGGC AAGGTTGACAAACTAAGCGCTAGCCTCCACCTCCTTACCCTTACCCTTAC TCTTACTCTTACTCGCCCAAGCCATAACAACCGTAAGGACAAAGGTTGCG TCCAACAATTGACTCAGCATGCGCTCCCATCTCACCACTTTCTGTTTGAC GGCCTGCATTTGCCTGCCTGCACCCTTCTCTCCATTCTAGACTTCAGGAC TGGATGAGAGCGGGAGCCCCAGCGGTGTCCCAGCGTTTGATGAGACCAAA ACCCTACTGGGCTTTTACTCGGTACACGTTTACCTATTTAACTGCTTGCT GGCATGGCTTTGGCAAGCTGGCATCTCACACCTGCCTTGCATCGCATCTC ACAGTTCACCTGGGATGGCCAACAAACCAACGTGGTCTTCCGAAGCACAG AGGAGGCCAAGTGCAGCAGTGACCTCCAGAAGAAGCTGCAGGTGAGATGG ACGAGAGCTCCCCCGTTAAGTAAGCGCTGAACCGTTGGTTGGCTGGCTGG CTGGCCTAACTCTCCTCTCAGGAGGAGCTTGAGGCAGAGCTGAAGAGACC CGACCAAGAGGTTGTTCACACCCTGGACGCAGAGCAAGGGCTGCACAAGC TCAAAGAAGAGGTGGTTTGGTGCACCTGCACCTTGGTCTAACCTTATGAA TTTATTATGCTGACCTGCTCTGACCTGGCCCGCTGCTGCCCTTACCTCAG GTGTTTGCTGCAATGGAAAAGTTTGATGCAGCGGGGGCTTTTGGGGGGCA GGGGGATGCAGAGCTGGGCCCTGTTCCGACTGACATGCAAATTGCTGCCT GATAAACGAAATGGAGGCGTTTGAGCATGAGTGATGAATTGGCGCTCAAT GCTGATGGAACTACTTCGTGGAACTACTTAGTGGAACAAGTAATGGTGTA GCTAGTTAATCAAATTAATGATTTAGTCACCAAAAAGAGAGAGGGAGAAG ATAAAAGAAAGGCTGAGTGCCTGATTGGTTTCCAAGGGTTACTTTTATGA CAGACTAAATGCTCTCTACGTTCGCTGCTTTGTAAGCTTTGGATGTTTCA TGTCGAATGCTCTGCATCTGCTATGCACTTGGAGATCTTGCTAAAAATGA CAGCAGGAAGGAAGGAAGGGTTCGGATTAGAGTGGGAGCCAGGGGTTAAA GGCAGAAGATAAACCTCACCGATTAGATTAATCGGTCTTGCTCTCTTTCT TGGCAGGAGGTGCACTAGGGTCTGGTATGCCTGTGGTGGTGCCGTTTTGA GCCATTGTGAGCTATGCACACCATGGGGTGGGTGATGGAGGATAGAGTAC CTGAGACGGTGTAGATGACTTTGTGCACAGGTGTAAAGGGGTTGAATGCT TCACCAATGTATGACTGAGCGAGCGTCATGGTGCAGAGAAAGCCAACCAC C
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_1018:7807..12557-

>mRNA_C-australica_Contig_1018.4.2 ID=mRNA_C-australica_Contig_1018.4.2|Name=mRNA_C-australica_Contig_1018.4.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1776bp|location=Sequence derived from alignment at C-australica_Contig_1018:7807..12557- (Chrysoparadoxa australica CS_1217)
ATGAGCAGGGTGAGGATATTTGCAGACCTCAAGTTGGATGGAGTCACTGT
GAGAGGCAGTAGTGAAGTGCTCAAAGCATGCCGTGCTGCTGTGAGCGTGG
TTCGCCAACCGCAAGAGCAATGGTACAAAGACGAGGGAGGGAAACACAAC
AAAATTGAAATAGCTACCCAGGTCATGGAGAAAGCGGGTGCGAATAGCAG
CAACTCCTGGATCCCGCGAGAAGGTGTGCCGCTCCAGGTCACCCTGCACT
ATGACACAGGCTTTGTTGTGCTGGACCAATCCATCATGGTGCCACAGCGA
GGGAATCAGCTGGTCACAGACAAGGATGGCCAAGCGCTACTCAAGTACAG
GATTCTGGAAGTGTCACAACGGCATCAGGGGAAGAGGTTTGTGTTTGCTA
TCGGTCCAGACACTCGGGCTGCGCCTACCATGAATGATATTGCCCCAGTC
TTCACGGTGCCAGTGGTTGTGTTGAGTAAGCGCAAGAAGAAGCACGACAG
GGACAGTGGAGCCGGTGCAGTGGGAGCAGAGGGAAGAGGGAGAGGCCGCA
AGCAGGGCCAAGCACCGGCTCACAAGCAGTCAGAGTCACCTCCGGCACAC
CAGCATAGTAACAGGGGAAGGGGCGTTCAGGCACCGCCACTGGCTTTGAT
TGCGCAAGCACCAGGGCTGCAGCCTCTACCTCCTCTCCCGGGCAAGCCAA
CCGGGAAAGCCATGCAAGAGCTGATGCAGTGGGTAGCTGCAGCTGCATCC
ATGTTGCATGACACGCTACAGTTCCAGCATGCCGGGTATGAAGTCGCAGA
GGACAATGCAGTGGATTACTCGCTCCCTATTTGGAGATGTCCAGAGTGCA
GGGTGACGCGAGATAGGTCCTCACCTGACACACCACACTCATCCCAATGC
AGGCTTGGCGGTCTGCTGGACCTGTACTGCTTGCGCGTTGTCCCAATCAC
CGCCTCGTTGCTGCAGCACGGCATTGCAGCTCCTAGTCCGGTGGCTCCGG
CACCTCTGCGCAGGGCTCTATCTTCTCCAAGAGGTGCAGCTGTCGGCGAC
ATGATGGTGGAGGCAGCCAATATTCTAGGGGCGCTACCTGATGGAACTGC
TGCTACTACTCTGACCAGGGGTGATAGCATTTATCACCCTGGAAAACTAG
CCATGACACTGGGAAGGGAAGAAAGCTGGGAATCCACTGGCCCTCCTCTC
AGGCAGCTCTCACAGTTGTCTGAAGCAGCTGCAAGACTGCAAGGCTCGGA
AGGGTCTGCGCATAGCTCAGATAGCGAAGTAGCAGCAGCAGGCCCACCTC
CTGATTTGCAAGGTGCCAGGATGCCAAGTGTGGCTGTGTTCCTTCCAGCA
AGGATCCCTCCTTGCCCTGCTGAGCTGGGAGTGCACTATGTCAACAGGAG
GAAGAGGGATGGCAAGACTTCAGGACTGGATGAGAGCGGGAGCCCCAGCG
GTGTCCCAGCGTTTGATGAGACCAAAACCCTACTGGGCTTTTACTCGTTC
ACCTGGGATGGCCAACAAACCAACGTGGTCTTCCGAAGCACAGAGGAGGC
CAAGTGCAGCAGTGACCTCCAGAAGAAGCTGCAGGAGGAGCTTGAGGCAG
AGCTGAAGAGACCCGACCAAGAGGTTGTTCACACCCTGGACGCAGAGCAA
GGGCTGCACAAGCTCAAAGAAGAGGTGTTTGCTGCAATGGAAAAGTTTGA
TGCAGCGGGGGCTTTTGGGGGGCAGGGGGATGCAGAGCTGGGCCCTGTTC
CGACTGACATGCAAATTGCTGCCTGA
back to top