mRNA_C-australica_Contig_1018.4.2 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1018.4.2 vs. uniprot
Match: D8LJ34_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ34_ECTSI) HSP 1 Score: 140 bits (352), Expect = 1.740e-30 Identity = 83/187 (44.39%), Postives = 110/187 (58.82%), Query Frame = 3 Query: 3 PAVPQLNEGSCSFKVLLRGGAGQR-NMSRVRIFADLKLDGVTVRGSSEVLKACRAAVSVVRQPQEQWYKDEGGKHNKIEIATQVMEKAGANSSNSWIPREGVPLQVTLHYDTGFVVLDQSIMVPQRGNQLVTDKDGQALLKYRILEVSQRHQGKRFVFAIGPDTRAAPTMNDIAPVFTVPVVVLSKR 560 P P L +GS +F +LL G + N +V + ++ SE + CR+A++VV QP E WYKDEGGK+N I I V EK + P GVPL + L Y+ G V Q I+ Q QLVT++ G+A LK++I EVSQRHQ +RF I PD R AP +++APV TVPV+VLSKR Sbjct: 105 PQRPALLDGSTTFHLLLWEGCVRTGNRIKVHVETSSGRGREQIKADSEPIMVCRSALTVVSQPPESWYKDEGGKNNCIAIEATVREKLPSGQVGQAQP--GVPLTLALVYEAGTEVHSQEILQVQSDTQLVTNEHGRANLKFKITEVSQRHQSQRFCVKICPDVRLAPEFSNVAPVVTVPVMVLSKR 289
BLAST of mRNA_C-australica_Contig_1018.4.2 vs. uniprot
Match: A0A485LTJ6_9STRA (Aste57867_25083 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LTJ6_9STRA) HSP 1 Score: 112 bits (281), Expect = 3.810e-22 Identity = 88/270 (32.59%), Postives = 129/270 (47.78%), Query Frame = 3 Query: 198 WYKDEGGKHNKIEIATQVMEKAGANSSNSWIPREGVPLQVTLHYDTGFVVLDQSIMVPQRGNQLVTDKDGQALLKYRILEVSQRHQGKRFVFAIGPDTRAAPTMNDIAPVFTVPVVVLSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRGVQAPPLALIAQAPGLQPLPPLPGKPTGKAMQELMQWVAAAASMLHDTLQFQHAGYEVAEDNAVDYSLPIWRCPECRVTRDRSSPDTP-HSSQCRLGGLLDLY 1004 WYKDEGG+ + + +++ +SN + VPL+VTL Y+ VL Q I+ +Q V D +GQALLK RI +VS+ HQG+ F + PDT +P D+AP ++ P+ V SKR XXXXXXXX GR + + G QPL P +M+ ++QW + + L L++Q GYE D ++D P++RCP C +D + DT H S+C + +L Y Sbjct: 142 WYKDEGGRDKCMNLPVHLVD-----ASNQTVGHRPVPLRVTLLYENEHAVLKQDILKLSPDSQRVIDSNGQALLKLRIEDVSKNHQGQAFRLKVEPDTAQSPLFFDVAPDWSTPISVRSKRNKRXXXXXXXXSSHGLGASGIDPLGPDSPRENDD---------HGRPAKRQIMTANGGGVGSQPLHP--------SMEGVLQWTGSVINGLQQ-LEWQLIGYETKLDGSLDRDRPLYRCPACWRYKDMLTMDTQQHESKCLIANVLLTY 388
BLAST of mRNA_C-australica_Contig_1018.4.2 vs. uniprot
Match: A0A6G0WPZ0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WPZ0_9STRA) HSP 1 Score: 108 bits (270), Expect = 7.380e-21 Identity = 84/290 (28.97%), Postives = 129/290 (44.48%), Query Frame = 3 Query: 192 EQWYKDEGGKHNKIEIATQVMEKAGANSSNSWIPREGVPLQVTLHYDTGFVVLDQSIMVPQRGNQLVTDKDGQALLKYRILEVSQRHQGKRFVFAIGPDTRAAPTMNDIAPVFTVPVVVLSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRGVQAP-PLALIAQAPGLQPLP-------PLPGK----------PTGKAMQELMQWVAAAASMLHDTLQFQHAGYEVAEDNAVDYSLPIWRCPECRVTRDRSSPDTP-HSSQCRLGGLLDLY 1004 E WYKDEGG+ + + +++ ++N +PR VPL+VTL Y++ VL Q I+ +Q + D GQALLK RI +VS+ HQG+ F + PDT +P D+AP ++ P+ V SKR + RG P P + + + G+ PL P P K P +M+ +++W ++ L L++Q GYE D +D PI+RCP C +D + DT H +C + +L Y Sbjct: 140 ELWYKDEGGRDKCMNLPVHLVD-----ATNQPVPR-AVPLRVTLLYESEHPVLKQDILKLSPDSQRLIDSHGQALLKLRIEDVSKNHQGQAFRLKVEPDTAQSPLFFDVAPDWSTPISVRSKRN------------------------------------------KRRGGPIPSPHVIASSSSGIDPLDSPREGEDPRPVKRTISPSTASGPLHPSMESILRWTSSVVQGLQQ-LEWQPIGYETRLDGGIDKDRPIYRCPACWRYKDVMTMDTQQHEGKCLIANVLLTY 380
BLAST of mRNA_C-australica_Contig_1018.4.2 vs. uniprot
Match: A0A024TWZ7_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TWZ7_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 2.870e-17 Identity = 79/290 (27.24%), Postives = 124/290 (42.76%), Query Frame = 3 Query: 192 EQWYKDEGGKHNKIEIATQVMEKAGANSSNSWIPREGVPLQVTLHYDTGFVVLDQSIMVPQRGNQLVTDKDGQALLKYRILEVSQRHQGKRFVFAIGPDTRAAPTMNDIAPVFTVPVVVLSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---RGRGVQAPPLALIAQAPGLQPLPPLPGKPTGKAMQELMQWVAAAASMLH--DTLQFQHAGYEVAEDNAVDYSLPIWRCPECRVTRDRSSPDTP-HSSQCRLGGLLDLYCLRVVPITASLLQ 1043 E WYKDEGG+ + + +++ ++N + VPL+VTL Y+ VL Q I+ +Q V D +G ALLK RI +VS+ HQG+ F + PDT +P D+AP ++ P+ V SKR R P + + L P +M+ +++W S++H L++Q GYE+ D + D PI+RCP C +D + D+ H S+C + +L Y V +LL+ Sbjct: 145 ELWYKDEGGRDKCMPLPVLLVD-----ATNQPVGHRAVPLRVTLLYENEHAVLKQDILKLSPDSQRVIDNNGMALLKLRIEDVSKNHQGQAFRLKVEPDTAQSPLHFDVAPDWSTPISVRSKRNKRRNGGGTSSTSHHPLIDPLESPRGGEHGHHPGTTAFDMDSRPSKRSANGMMPSSSPTSHGGAPSTLHP--------SMESILRWTT---SVIHGFQQLEWQPIGYEMRLDGSQDKDRPIFRCPACWRYKDTMTMDSQQHESKCLIANVLLTYASDTVGHLDALLK 418
BLAST of mRNA_C-australica_Contig_1018.4.2 vs. uniprot
Match: A0A7S4D5X0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5X0_HETAK) HSP 1 Score: 92.4 bits (228), Expect = 8.220e-16 Identity = 72/202 (35.64%), Postives = 100/202 (49.50%), Query Frame = 3 Query: 15 QLNEGSCSFKVLLRGGAGQRNMSRVRIFADLKLDGVTVR-GSSEVLKACRAAVSVVRQPQEQWYKDEGGKHNKIEIATQVMEKAGANSSNSWIPREG------------VPLQVTLHYDTGFVVLDQSIMVPQRGNQLVTDKDGQALLKYRILEVSQRHQGKRF---VFAIGPDTRAAP----TMNDIAPVFTVPVVVLSKR 560 +L +G C F L G + + V + D ++ V++ SSE++ C A + VV P +WYKDEGGK N I + ++ AG +P EG VPL V L Y+ G V Q I+ R ++L A L++R+ EVSQRHQG+RF V A P AAP + +APV + P VLSKR Sbjct: 92 ELVDGVCRFSFKL-GPNVKLAGNTVAVHVDARVADVSIPPASSELMTICSALLEVVADPPTKWYKDEGGKGNCITLNVRLKGPAGEG-----LPEEGGPAARARPAAQEVPLFVALLYEDGKAVGQQGILQLARDSRLAVGPGAPATLRFRVGEVSQRHQGQRFRIRVQATPPRPGAAPPGAAVFSRVAPVDSAPFTVLSKR 287
BLAST of mRNA_C-australica_Contig_1018.4.2 vs. uniprot
Match: W4GFW1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GFW1_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 1.490e-15 Identity = 96/311 (30.87%), Postives = 139/311 (44.69%), Query Frame = 3 Query: 192 EQWYKDEGGKHNKIEIATQVMEKAGANSSNSWIPREGVPLQVTLHYDTGFVVLDQSIMVPQRGNQLVTDKDGQALLKYRILEVSQRHQGKRFVFAIGPDTRAAPTMNDIAPVFTVPVVVLSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRGVQAPPLALIAQAPGLQPLPPLPGKPTGK--------AMQELMQWVAAAASMLH--DTLQFQHAGYEVAEDNAVDYSLPIWRCPECRVTRDRSSPDTP-HSSQCRLGGLLDLYCLRVVPITASLLQ----HGIAAPSPVAPA 1079 E WYKDEGG+ + + +++ ++N + VPL+VTL Y+ VL Q I+ +Q V D G ALLK RI +VS+ HQG+ F + PDT +P D+AP ++ P+ V SKR XXXXXXXXXXXXXX +M+ +++W S++H L++Q GYEV D + D PI+RCP C +D + D+ H S+C + +L Y V +LL+ +G A+ P APA Sbjct: 146 ELWYKDEGGRDKCMPLPVHLVD-----ATNQPVGHRAVPLRVTLLYENEHAVLKQDILKLSPDSQRVIDSTGMALLKLRIEDVSKNHQGQAFRLKVEPDTTQSPLHFDVAPDWSTPISVRSKRNKRRNGGGTLSQHHAPTSSHIDPLESPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALHPSMESILRWTT---SVIHGFQQLEWQPIGYEVRLDGSQDKDRPIFRCPACWRYKDTMTMDSQQHESKCLIANVLLTYASDTVGHLDALLKLTEKYGTASSIPPAPA 448
BLAST of mRNA_C-australica_Contig_1018.4.2 vs. uniprot
Match: A0A397AVR5_9STRA (Uncharacterized protein n=13 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AVR5_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 2.600e-15 Identity = 97/311 (31.19%), Postives = 140/311 (45.02%), Query Frame = 3 Query: 192 EQWYKDEGGKHNKIEIATQVMEKAGANSSNSWIPREGVPLQVTLHYDTGFVVLDQSIMVPQRGNQLVTDKDGQALLKYRILEVSQRHQGKRFVFAIGPDTRAAPTMNDIAPVFTVPVVVLSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRGVQAPPLALIAQAPGLQPLPPLPGKPTGK------AMQELMQWVAAAASMLH--DTLQFQHAGYEVAEDNAVDYSLPIWRCPECRVTRDRSSPDTP-HSSQCRLGGLLDLYCLRVVPITASLLQ----HGIAA--PSPVAPA 1079 E WYKDEGG+ + + +++ ++N + VPL+VTL Y+ VL Q I+ +Q V D G ALLK RI +VS+ HQG+ F + PDT +P D+AP ++ P+ V SKR XXXXXXXXXXXXXX +M+ +++W S++H L++Q GYEV D + D PI+RCP C +D + D+ H S+C + +L Y V +LL+ +G A+ PSP PA Sbjct: 823 ELWYKDEGGRDKCMPLPVHLVD-----ATNQPVGHRAVPLRVTLLYENEHAVLKQDILKLSPDSQRVIDSTGMALLKLRIEDVSKNHQGQAFRLKVEPDTTQSPLHFDVAPDWSTPISVRSKRNKRRNGGGTLSQHHAPTSSHIDPLESPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSALHPSMESILRWTT---SVIHGFQQLEWQPIGYEVRLDGSQDKDRPIFRCPACWRYKDTMTMDSQQHESKCLIANVLLTYASDTVGHLDALLKLTEKYGTASSIPSPALPA 1125
BLAST of mRNA_C-australica_Contig_1018.4.2 vs. uniprot
Match: A0A6H5JP05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP05_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 2.150e-13 Identity = 59/198 (29.80%), Postives = 100/198 (50.51%), Query Frame = 3 Query: 3 PAVPQLNEGS--CSFKVLLRGGAG--QRNMSRVRIFADLKLDGVTVRGSSEVLKACRAAVSVVRQPQ----EQWYKDEGGKHNKIEIATQVMEKAGANSSNSWIPREGVPLQVTLHYDTGFVVLDQSIMVPQRGNQLVTDKDGQALLKYRILEVSQRHQGKR----FVFAIGPDTRAAPTMNDIAPVFTVPVVVLSKR 560 P P+++ G+ CS ++ + +R R+++ AD + D ++ L R + ++ P +QWYKDEGG+ N +E+ ++ +G + VPL++ L YD V +Q I+ ++LV D+ G+A L+ RI EVS+ HQ + F + PD + P DI+ V + P+ VLSKR Sbjct: 102 PVAPKISNGAGKCSIRMKITDDKTTMERRRFRIKVEADGRAD--IEAALTDKLTVIRNRLEILENPDNPVPDQWYKDEGGRENCVELQVHLLGPSGEE-----VKSRRVPLRLVLMYDNMHRVQNQEILKLSPDSKLVIDEHGKATLRVRIEEVSKNHQKQATRIAFRIKVEPDVQEQPLSMDISSVVSKPITVLSKR 292
BLAST of mRNA_C-australica_Contig_1018.4.2 vs. uniprot
Match: A0A7R9U6U2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6U2_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.260e-11 Identity = 90/366 (24.59%), Postives = 144/366 (39.34%), Query Frame = 3 Query: 9 VPQLNEGSCSFKVLLRGGAGQRNMSR------VRIFADLKLDGVT-------VRGSSEVLKACRAAVSVVRQPQE---QWYKDEGGKHNKIEIATQVMEKAGANSSNSWIPREGVPLQVTLHYDTGFVVLDQSIMVPQRGNQLVTDKDGQALLKYRILEVSQRHQGKRFVFAIGPDTRAAPTMNDIAPVFTVPVVVLSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----RGRGVQAPPLALIAQAPGLQPLPPLPGKPTGKAMQELMQWVAAAASMLHDTLQFQHAGYEV-AEDNAVDYSLPIWRCPECRVTRDRSSPDTPHSSQCRLGGLLDLYCLRVVPITASLL 1040 + QL EG F + L+ QR VR++A L G + G S +LK C +++ + +WYKDEGG+ N ++I + + G ++ + V + + L Y+ G V QSI+ + +T++ G + RI+EVSQRHQGKRF+ +A + +A FT PV VLSKR G+ + L + AP + G AM + WVA A L +T ++ YE +D + P+ RCP C +P H + C+L +L Y + P ++++ Sbjct: 85 ILQLLEGRARFTLTLQTSFLQRVRGEASAVLVVRLYAASPLLGAPEPKSEPLLTGESSLLKICDKCLTINCSENKIPGKWYKDEGGQSNCLQIEITLQDLGGRQIRDA---DKQVNVSLKLLYEDGTEVSSQSILAVAKDTYALTEQ-GYVKILARIMEVSQRHQGKRFII------KAFTSNPGVAAGFTNPVCVLSKRKRHQRKKEENEKRVKDLRRTLQQSPGVPPPAQPAYNAAGVPLGAVAASNGQSITGRALTTPSPAPAVSEFVKRDG--VRDAMSVMCSWVAQAMETLRET-EWVLVSYEQDVRTGQIDRNFPVKRCPSCHALYTIVTPKE-HKAGCKLAKVLRQYDAELRPYFSTIV 436
BLAST of mRNA_C-australica_Contig_1018.4.2 vs. uniprot
Match: A0A225VT52_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225VT52_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 4.950e-11 Identity = 50/144 (34.72%), Postives = 79/144 (54.86%), Query Frame = 3 Query: 138 SEVLKACRAAVSVVRQPQEQWYKDEGGKHNKIEIATQVMEKAGANSSNSWIPREGVPLQVTLHYDTGFVVLDQSIM--VPQRGNQLVTDKDGQALLKYRILEVSQRHQGKRFVFAIGPDTRAAPTM-NDIAPVFTVPVVVLSKR 560 S + + + VV QP + W+KDEGG+ + +A +M GA ++ VPL V L Y++G +VL+QSI+ P + G+A + +RI +VS+ HQG+ F+ IGP+ + +M DIAP T + + SKR Sbjct: 111 SASVNVVKEKLQVVTQPPDVWFKDEGGREKCMTVALTLMPAPGA-----YLEDRVVPLDVKLLYESGNLVLNQSILRLFPDMRPNMT---HGRATISFRIDDVSKNHQGQSFMLEIGPEQQDGSSMFQDIAPTRTSVIAIRSKR 246 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1018.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1018.4.2 >prot_C-australica_Contig_1018.4.2 ID=prot_C-australica_Contig_1018.4.2|Name=mRNA_C-australica_Contig_1018.4.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=592bp MSRVRIFADLKLDGVTVRGSSEVLKACRAAVSVVRQPQEQWYKDEGGKHNback to top mRNA from alignment at C-australica_Contig_1018:7807..12557- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1018.4.2 ID=mRNA_C-australica_Contig_1018.4.2|Name=mRNA_C-australica_Contig_1018.4.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=4751bp|location=Sequence derived from alignment at C-australica_Contig_1018:7807..12557- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1018:7807..12557- >mRNA_C-australica_Contig_1018.4.2 ID=mRNA_C-australica_Contig_1018.4.2|Name=mRNA_C-australica_Contig_1018.4.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1776bp|location=Sequence derived from alignment at C-australica_Contig_1018:7807..12557- (Chrysoparadoxa australica CS_1217)back to top |