mRNA_C-australica_Contig_1018.3.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1018.3.1 vs. uniprot
Match: D7G2H0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2H0_ECTSI) HSP 1 Score: 293 bits (750), Expect = 2.180e-96 Identity = 142/275 (51.64%), Postives = 188/275 (68.36%), Query Frame = 1 Query: 1 WSYGPEICLCVFAVLGAVK----------------------------VKKMEKASGKEIFWAQSLVMTFLVGFGGGILAPFLLGKPPVMLVNDLIVPVVFIAWFLVARAEPLVFAIMNTPVVSQVIYVLGEVFRGNTLCGVVAAANKAIDHGKYYPIPVWGPIVLGTIAGCGGMFLPFDKGLAGIKGGAPWPLQSAFYCAFVYHLGVNDPNVTGFVSDKIGPY-SAETV---KTLVVGFLCTMTLAQSYIGEAFNPFTPVHKVIYTVSGIPDPSA 729 W YG E+CL FA+ + + V+K+EK SGK++FWA+SLVMT+++ FGGGILAPFLLGKPPVM VNDLIVP+V + WF+ RAE +FA++NTP++ QVI VL EVFR N++CG+V +N + GK+YPI +WGPI+LGT+ GCGG+FLP DKGL G+K GAPWPLQSAFY + ++L V DPNV ++ D + + V + +V GFLC + LAQ+ I AFNPFTPVH V+YTV+G+P+P A Sbjct: 12 WEYGAEVCLAAFALFHSAREIKQACDALRLACAGSGALTFKQKAKILVRKIEKDSGKQMFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPLVAVCWFVSNRAEGPIFALINTPIMKQVILVLSEVFRANSMCGIVVLSNSILKPGKHYPIALWGPILLGTVGGCGGLFLPLDKGLKGLKNGAPWPLQSAFYGSMFFNLFVYDPNVGPYLRDAAALFLDGDLVVQGRAIVAGFLCVVALAQTLISPAFNPFTPVHNVVYTVTGVPNPEA 286
BLAST of mRNA_C-australica_Contig_1018.3.1 vs. uniprot
Match: A0A835Z0I7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0I7_9STRA) HSP 1 Score: 270 bits (691), Expect = 1.390e-87 Identity = 128/241 (53.11%), Postives = 169/241 (70.12%), Query Frame = 1 Query: 7 YGPEICLCVFAVLGAVKVKKMEKASGKEIFWAQSLVMTFLVGFGGGILAPFLLGKPPVMLVNDLIVPVVFIAWFLVARAEPLVFAIMNTPVVSQVIYVLGEVFRGNTLCGVVAAANKAIDHGKYYPIPVWGPIVLGTIAGCGGMFLPFDKGLAGIKGGAPWPLQSAFYCAFVYHLGVNDPNVTGFVSDKIGPYSAETVKTLVVGFLCTMTLAQSYIGEAFNPFTPVHKVIYTVSGIPDPSA 729 Y PE+CL ++A++GA +VK K ++WAQSLV+TFL+ FGGGI+APFLLGKPPV+L+NDL+V V +W +V R E V A++ PV+SQ + + EVFR N C +V A K I GKYYPIP WGP++LGTIAGC GMFLPFDKGLA IKGG+PWPLQSAFY + +HL +DP+V ++ G Y+A+ + VV F + Q+Y G FNPF+P+H+V Y +SG+ P A Sbjct: 20 YMPEVCLFIYALVGAARVKS---GPAKNMYWAQSLVLTFLMCFGGGIVAPFLLGKPPVILINDLLVVAVLGSWLVVNRLEEPVGALLRAPVISQALAFMAEVFRANGFCRMVQVAFKEIPAGKYYPIPFWGPVLLGTIAGCAGMFLPFDKGLASIKGGSPWPLQSAFYGSLAFHLLAHDPHVRAALAPYAGDYTADAARACVVAFFAAVATLQTYAGPHFNPFSPLHRVAYAISGVKAPGA 257
BLAST of mRNA_C-australica_Contig_1018.3.1 vs. uniprot
Match: A0A4D9CX56_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CX56_9STRA) HSP 1 Score: 147 bits (371), Expect = 7.450e-38 Identity = 83/242 (34.30%), Postives = 126/242 (52.07%), Query Frame = 1 Query: 1 WSYGPEICLCVFAVLGAVKVKKMEKASGKEIFWAQSLVMTFLVGFGGGILAPFLLGKPPVMLVNDLIVPVVFIAWFLVARAEPLVFAIMNTPVVSQVIYVLGEVFRGNTLCGVVAAANKAIDHGKYYPIPVWGPIVLGTIAGCGGMFLPFDKGLAGIKGGAPWPLQSAFYCAFVYHLGVNDPNVTGFVSDKIGPY---SAETVKTLVVGFLCTMTLAQSYIGEAFNPFTPVHKVIYTVSGIP 717 + Y E+CL F + +++V+ + S W LV+ FL GF GG + P G+ PV+ VNDL+VP+V ++W+LV V ++ T ++ L E++R ++ V A I G YYPI V GP+++GT++G G F+P D+G++ + G P LQ+ YHL +DP + G + E +K L V F M G +NPFTPVH ++Y V GIP Sbjct: 26 YPYEFEVCLFAFCLGASMRVRPSAQYS-----WLHHLVLVFLTGFAGGTIIPMFFGRTPVLFVNDLLVPLVCLSWYLVHYTR--VGGLLQTSPCKFLLVALFEIYRAASILKTVGQAATDIAPGPYYPIAVVGPVLVGTLSGSMGAFMPPDRGISFLATGVPLNLQTTLLACLFYHLAAHDPALPGAYLRGLPALRLSDPENLKALTVFFFVAMAFLSLVKGPDYNPFTPVHTLLYQVLGIP 260
BLAST of mRNA_C-australica_Contig_1018.3.1 vs. uniprot
Match: A0A7S2SKA8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKA8_9STRA) HSP 1 Score: 135 bits (341), Expect = 1.540e-34 Identity = 82/248 (33.06%), Postives = 127/248 (51.21%), Query Frame = 1 Query: 7 YGPEICLCVFAVLGAVKVKKMEKASGKEIFWAQSLVMTFLVGFGGGILAPFLLGKPPVMLVNDLIVPVVFIAWF-LVARAEPLVFAIM-NTPVVSQVIYVLGEVFRGNTLCGVVAAANKAIDHGKYYPIPVWGPIVLGTIAGCGGMFLPFDKGLAGIKGGAPWPLQSAFYCAFVYHLGVNDPNVTGFVSDKIGPYSAETVKTLVVGFLCTMTLA------QSYIGEAFNPFTPVHKVIYTVSGIPDPS 726 Y E L F A K ++ E+ + FW SLV T + +GGGI+ P +LG P + ND + +V +W+ L PLV ++ N+ V+ ++ + E R N + AN + +YPIP+WGPI+ G I+GC G F+ GL ++ W +QS+FY A YH+ VNDP + G + K+ A + LV C L +++ G FNPF PVH ++Y ++G +P+ Sbjct: 69 YSLEFLLWGFTTWMAYKFRRQERVQAERYFWLNSLVRTAIACYGGGIIVPMMLGMKPFPIENDAAITLVLFSWWTLHGTPAPLVTWVLDNSTVLRCFLFFIFEALRCNVVVKWCIIANSMLAPSVHYPIPIWGPILCGGISGCFGGFILGGVGL--VQSEVSWLIQSSFYAAAYYHITVNDP-IVGPILGKLHISGAGS-DPLVARMTCIFALGAVAVLQEAFFGAHFNPFAPVHHLLYKITGAHNPA 312
BLAST of mRNA_C-australica_Contig_1018.3.1 vs. uniprot
Match: A0A7R9U3G1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3G1_9STRA) HSP 1 Score: 128 bits (322), Expect = 5.540e-32 Identity = 76/223 (34.08%), Postives = 111/223 (49.78%), Query Frame = 1 Query: 19 ICLCVFAVLGAVKVKKMEKASGKEIFWAQSLVMTFLVGFGGGILAPFLLGKPPVMLVNDLIVPVVFIAWFLVARAEPLVFAIMNTPVVSQVIYVLGEVFRGNTLCGVVAAANKAIDHGKYYPIPVWGPIVLGTIAGCGGMFLPFDKGLAGIKGGAPWPLQSAFYCAFVYHLGVNDPNVTGFVSDKI----GPYSAETVKTLVVGFLCTMTLAQSYIGEAFNPF 675 +C F +GA K + S W +SL+ TFL FGGG L P +LGKPPV L +D++ + +AW L P+ + + + + G +F+ C V A K + YPIP+ GPIVLG + GGMFLPFDKGLA + G + C+ +H+ VND + GF+ + GP + ET VG+ L + + +F+PF Sbjct: 38 LCAFCFIFMGARAAAKAKSGS-----WVESLIRTFLTAFGGGTLVPLILGKPPVFLDSDVLFCMTLLAWAL-THLTPVGRWVEYNQALRLPLNLGGYIFKAVKCCSTVNTAAKVLSASALYPIPLMGPIVLGVLGSTGGMFLPFDKGLAAVSKGLSVAFEIPLACSAFFHIIVNDQS--GFLGTTLRQLTGPVTNETAVLAAVGWFAGTYLTKELLDSSFDPF 252
BLAST of mRNA_C-australica_Contig_1018.3.1 vs. uniprot
Match: A0A6H5JUV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV5_9PHAE) HSP 1 Score: 130 bits (327), Expect = 8.450e-32 Identity = 79/246 (32.11%), Postives = 124/246 (50.41%), Query Frame = 1 Query: 1 WSYGPEICLCVFAVLGAVKVKKMEKASGKEIFWAQSLVMTFLVGFGGGILAPFLLGKPPVMLVNDLIVPVVFIAWFLVARAEPLVFAIMNTPVVSQVIYVLGEVFRGNTLCGVVAAANKAIDHGKYYPIPVWGPIVLGTIAGCGGMFLPFDKGLAGIKGGAPWPLQSAFYCAFVYHLGVNDPNVTG-FVSDKIGPYSA--ETVKTLVVGFLCTMTLAQSYIGEAFNPFTPVHKV----IYTVSGIP 717 W Y E L F+++ + VK K++ E V T + G G++ P L+ PP+ L NDL+V + + + + +P V + TP + + + +L R N +C +V A YYPI ++GPI++G G GG +P DKGL+ I PW +Q F A YH+ ND + G V +G +A E ++ + V F +T+ Q+Y FNPFTP H+ +Y V+G+P Sbjct: 17 WPYSSEFYL--FSLVTSACVKARGKSTKFEGLLLPMFVHTLMCTTGSGVVGPLLMRDPPLFLNNDLLVTCIMVFFLVSVVFDPYVVNFIKTPHLWKAMALLSTTSRMNKICFIVDYALTKFPPSPYYPIALFGPIMIGLARGIGGSLVPADKGLSSISKDLPWAVQLCFSVATFYHIVANDTYILGGMVRGALGLENATREDIRLIAVTFGVVVTVIQTYYAPKFNPFTPAHQATSPALYAVTGMP 260
BLAST of mRNA_C-australica_Contig_1018.3.1 vs. uniprot
Match: D7FML9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FML9_ECTSI) HSP 1 Score: 118 bits (296), Expect = 2.000e-27 Identity = 65/185 (35.14%), Postives = 99/185 (53.51%), Query Frame = 1 Query: 172 PPVMLVNDLIVPVVFIAWFLVARAEPLVFAIMNTPVVSQVIYVLGEVFRGNTLCGVVAAANKAIDHGKYYPIPVWGPIVLGTIAGCGGMFLPFDKGLAGIKGGAPWPLQSAFYCAFVYHLGVNDPNVTG-FVSDKIGPYSA--ETVKTLVVGFLCTMTLAQSYIGEAFNPFTPVHKVIYTVSGIP 717 PP+ L NDL+V + + + +P V + TP + + + +L R N +C +V A YYPI ++GPI++G G GG +P DKGL+ I PW +Q F A YH+ ND + G V +G +A E ++ + V F +T+ Q+Y FNPFTP H+ +YTV+G+P Sbjct: 4 PPLFLNNDLLVTCIMVFFLFSVVFDPYVVNFIKTPHLWKAMALLSTTSRMNKICFIVDYALTKFPPSPYYPIALFGPIMIGLARGIGGSLVPADKGLSSISKDLPWAVQLCFSVATFYHVVANDTYILGGMVRGALGLENATREDIRLIAVTFGVVVTVIQTYYAPKFNPFTPAHQALYTVTGMP 188
BLAST of mRNA_C-australica_Contig_1018.3.1 vs. uniprot
Match: A0A7S1RES9_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RES9_ALECA) HSP 1 Score: 100 bits (248), Expect = 3.550e-21 Identity = 57/170 (33.53%), Postives = 89/170 (52.35%), Query Frame = 1 Query: 52 VKVKKMEKASGKEIFWAQSLVMTFLVGFGGGILAPFLLGKPPVMLVNDLIVPVVFIAWFLVARAEPLVFA----IMNTPVVSQVIYVLGEVFRGNTLCGVVAAANKAIDH------GKYYPIPVWGPIVLGTIAGCGGMFLPFDKGLAGIKGGAPWPLQSAFYCAFVYHL 531 +KV + + FW ++LV T + FGGG LAP ++ PV L + + AW+ V P+V I + V+ +L +F+ + G + A KA+DH +Y+ +P+ GP+V G + GCGG FLPFDKGL I+ G WP+ +AF+ +Y+ Sbjct: 94 LKVAQDVREQVVNFFWPKALVTTAIAAFGGGFLAPLIVAHCPVPLREETFFWFLVFAWY-VTHHVPVVSVTWCEIAKSKAGWTVLTILFGIFKTQQIVGSIELAAKAVDHEPLMPHSRYFFVPMAGPLVCGFLGGCGGAFLPFDKGLRPIEEGKQWPVSAAFFATVIYYF 262
BLAST of mRNA_C-australica_Contig_1018.3.1 vs. uniprot
Match: A0A7S1VWR2_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1VWR2_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 1.970e-20 Identity = 64/171 (37.43%), Postives = 89/171 (52.05%), Query Frame = 1 Query: 64 KMEKASGKEIFWAQSLVMTFLVGFGGGILAPFLLGKPPVMLVNDLIVPVVFIAWFLVARAEPLVFAIMN-TPVVSQVIYVLGEVFRGNTLCGVVAAANKAIDHGKYYPIPVWGPIVLGTIAGCGGMFLPFDKGLAGIKGGAPWPLQSAFYCAFVYHLGVNDPNVTGFVSDK 573 K+ KA K + L+ L GGGIL P L K PV L ND P+ + F + P+V +MN +PVV ++ V E+ R + AA+ AI + P++GPI+ GT+AGCGG FLP +KGL I G P+ SAF A + HL +N G ++ K Sbjct: 49 KVFKAVPKTASVSYKLISMILACTGGGILVPIFLNKVPVPLANDAY-PIAILTSFAIHYYFPVVAEVMNLSPVVKSLVVVFYELIRAKVVLTFTLAASAAIAP-TTFSFPLFGPIMCGTVAGCGGAFLPMNKGLDPITSGLQPPMSSAFVGATLVHLFLNTSLSDGVINAK 217
BLAST of mRNA_C-australica_Contig_1018.3.1 vs. uniprot
Match: A0A6T1L8M4_9DINO (Hypothetical protein n=4 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A6T1L8M4_9DINO) HSP 1 Score: 97.1 bits (240), Expect = 2.900e-20 Identity = 59/181 (32.60%), Postives = 94/181 (51.93%), Query Frame = 1 Query: 16 EICLCVFAVLGAVKVKKMEKASGKEIFWAQSLVMTFLVGFGGGILAPFLLGKPPVMLVNDLIVPVVFIAWFLVARAEPLVFA---IMNTPVVSQVIYVLGEVFRGNTLCGVVAAANKAIDH------GKYYPIPVWGPIVLGTIAGCGGMFLPFDKGLAGIKGGAPWPLQSAFYCAFVYHL 531 E+ + F + A V+ E+ +G +FW ++LV T + FGGG LAP ++ PV L + ++ +AW++ L A I V+ VL +F+ + G + A KA+DH +Y+ +P P++ G + GCGG FLPFDKGL I G WP+ +AF+ +Y+ Sbjct: 54 EVTVAGFMLKVAQDVR--EQVAG--LFWPKALVTTGIAAFGGGFLAPLVVAHCPVPLREETFFWILVVAWYVTHHVPYLSAAWCEIATAKPGKTVLTVLFCIFKTQQIVGSIELAAKAVDHEPLMPHSRYFFVPCAAPLLCGFLGGCGGAFLPFDKGLRPISEGKAWPVSAAFFTTAIYYF 230 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1018.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1018.3.1 >prot_C-australica_Contig_1018.3.1 ID=prot_C-australica_Contig_1018.3.1|Name=mRNA_C-australica_Contig_1018.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=254bp WSYGPEICLCVFAVLGAVKVKKMEKASGKEIFWAQSLVMTFLVGFGGGILback to top mRNA from alignment at C-australica_Contig_1018:6498..8030+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1018.3.1 ID=mRNA_C-australica_Contig_1018.3.1|Name=mRNA_C-australica_Contig_1018.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1533bp|location=Sequence derived from alignment at C-australica_Contig_1018:6498..8030+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1018:6498..8030+ >mRNA_C-australica_Contig_1018.3.1 ID=mRNA_C-australica_Contig_1018.3.1|Name=mRNA_C-australica_Contig_1018.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=762bp|location=Sequence derived from alignment at C-australica_Contig_1018:6498..8030+ (Chrysoparadoxa australica CS_1217)back to top |