mRNA_C-australica_Contig_10171.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10171.2.1
Unique NamemRNA_C-australica_Contig_10171.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_10171.2.1 vs. uniprot
Match: A0A2E9I5T7_9RHOB (AsnC family transcriptional regulator n=1 Tax=Mameliella sp. TaxID=1924940 RepID=A0A2E9I5T7_9RHOB)

HSP 1 Score: 290 bits (742), Expect = 4.390e-99
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1 
Query:    1 LDETDKRILRVIQRKGRISNADLSEAVNLSPSACHRRVQRLETDGYVKDYVALLDARRMGLPATVFVEIKLTAQADEVLDAFEKAVARVPSVLECHLMAGTADYILKVVAEDTEDFARIHRQYLTRLPGVAQMQSSFALRTVFRTTALPV 450
            LDETDKRILRVIQRKGRISNADLSEAVNLSPSACHRRVQRLETDGYVKDYVALLDARRMGLPATVFVEIKLTAQADEVLDAFEKAVARVPSVLECHLMAGTADYILKVVAEDTEDFARIHRQYLTRLPGVAQMQSSFALRTVFRTTALPV
Sbjct:    3 LDETDKRILRVIQRKGRISNADLSEAVNLSPSACHRRVQRLETDGYVKDYVALLDARRMGLPATVFVEIKLTAQADEVLDAFEKAVARVPSVLECHLMAGTADYILKVVAEDTEDFARIHRQYLTRLPGVAQMQSSFALRTVFRTTALPV 152
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BLAST of mRNA_C-australica_Contig_10171.2.1 vs. uniprot
Match: A0A238JAD8_9RHOB (Leucine-responsive regulatory protein n=9 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A238JAD8_9RHOB)

HSP 1 Score: 268 bits (684), Expect = 3.070e-90
Identity = 135/150 (90.00%), Postives = 145/150 (96.67%), Query Frame = 1 
Query:    1 LDETDKRILRVIQRKGRISNADLSEAVNLSPSACHRRVQRLETDGYVKDYVALLDARRMGLPATVFVEIKLTAQADEVLDAFEKAVARVPSVLECHLMAGTADYILKVVAEDTEDFARIHRQYLTRLPGVAQMQSSFALRTVFRTTALPV 450
            LDETD+RILRV+QRKGRISNADLSE VNLS SACHRRVQRLE DGYV+DYVALL+AR++G+P TVFVEIKL+AQADEVL+AFEKAVARVP VLECHLMAGTADYILKVVAEDTEDFARIHRQYLTRLPGVAQMQSSFALRTVF+TTALPV
Sbjct:    3 LDETDRRILRVLQRKGRISNADLSEEVNLSASACHRRVQRLEADGYVRDYVALLNARKLGMPTTVFVEIKLSAQADEVLEAFEKAVARVPDVLECHLMAGTADYILKVVAEDTEDFARIHRQYLTRLPGVAQMQSSFALRTVFKTTALPV 152
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BLAST of mRNA_C-australica_Contig_10171.2.1 vs. uniprot
Match: A0A0B3S4T6_9RHOB (AsnC family transcriptional regulator n=6 Tax=Rhodobacterales TaxID=204455 RepID=A0A0B3S4T6_9RHOB)

HSP 1 Score: 268 bits (684), Expect = 3.070e-90
Identity = 135/150 (90.00%), Postives = 146/150 (97.33%), Query Frame = 1 
Query:    1 LDETDKRILRVIQRKGRISNADLSEAVNLSPSACHRRVQRLETDGYVKDYVALLDARRMGLPATVFVEIKLTAQADEVLDAFEKAVARVPSVLECHLMAGTADYILKVVAEDTEDFARIHRQYLTRLPGVAQMQSSFALRTVFRTTALPV 450
            LDETD+RILRV+QRKGRISNADLSE V+LS SACHRRVQRLET+GYV+DYVALLDARRMG P+TVFVEI LTAQADEVL+AFEKAV+RVP++LECHLMAGTADYILKVVAEDTEDFARIHRQYL+RLPGVAQMQSSFALRTVFRTTALPV
Sbjct:    3 LDETDRRILRVLQRKGRISNADLSEEVHLSASACHRRVQRLETEGYVRDYVALLDARRMGFPSTVFVEITLTAQADEVLEAFEKAVSRVPAILECHLMAGTADYILKVVAEDTEDFARIHRQYLSRLPGVAQMQSSFALRTVFRTTALPV 152
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BLAST of mRNA_C-australica_Contig_10171.2.1 vs. uniprot
Match: A0A0P1G8Z3_9RHOB (Leucine-responsive regulatory protein n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A0P1G8Z3_9RHOB)

HSP 1 Score: 268 bits (684), Expect = 3.070e-90
Identity = 135/150 (90.00%), Postives = 145/150 (96.67%), Query Frame = 1 
Query:    1 LDETDKRILRVIQRKGRISNADLSEAVNLSPSACHRRVQRLETDGYVKDYVALLDARRMGLPATVFVEIKLTAQADEVLDAFEKAVARVPSVLECHLMAGTADYILKVVAEDTEDFARIHRQYLTRLPGVAQMQSSFALRTVFRTTALPV 450
            LDETDKRILRVIQR+GRISNA+LSE VNLSPSACHRRVQRLETDGYV+DYVALL+AR++GLP TVFVEI L AQADEVL+AFE AVARVP+VLECHLMAGTADYILKV+AEDTEDFARIHRQYLTRLPGVAQMQSSFALRTVF+TTALPV
Sbjct:    3 LDETDKRILRVIQRRGRISNAELSEEVNLSPSACHRRVQRLETDGYVRDYVALLNARKLGLPTTVFVEITLNAQADEVLEAFETAVARVPAVLECHLMAGTADYILKVIAEDTEDFARIHRQYLTRLPGVAQMQSSFALRTVFKTTALPV 152
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BLAST of mRNA_C-australica_Contig_10171.2.1 vs. uniprot
Match: A0A238KXZ2_9RHOB (Leucine-responsive regulatory protein n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238KXZ2_9RHOB)

HSP 1 Score: 263 bits (673), Expect = 1.460e-88
Identity = 132/150 (88.00%), Postives = 144/150 (96.00%), Query Frame = 1 
Query:    1 LDETDKRILRVIQRKGRISNADLSEAVNLSPSACHRRVQRLETDGYVKDYVALLDARRMGLPATVFVEIKLTAQADEVLDAFEKAVARVPSVLECHLMAGTADYILKVVAEDTEDFARIHRQYLTRLPGVAQMQSSFALRTVFRTTALPV 450
            LDETD+RILRV+QRKGRISNADLSE V+LS SACHRRVQRLE +GY++DYVALLD RR+GLP TVFVEIKLTAQA+EVLDAFEKAV+RVP VLECHLMAGTADYILKVVAEDTEDFARIHRQYLTRLPGVAQMQSSFAL+TVF+TTALP+
Sbjct:    3 LDETDRRILRVLQRKGRISNADLSEEVHLSASACHRRVQRLEAEGYLRDYVALLDERRLGLPTTVFVEIKLTAQANEVLDAFEKAVSRVPDVLECHLMAGTADYILKVVAEDTEDFARIHRQYLTRLPGVAQMQSSFALKTVFKTTALPI 152
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BLAST of mRNA_C-australica_Contig_10171.2.1 vs. uniprot
Match: UPI001C389DB0 (Lrp/AsnC family transcriptional regulator n=1 Tax=Thalassococcus sp. CAU 1522 TaxID=2851652 RepID=UPI001C389DB0)

HSP 1 Score: 263 bits (673), Expect = 1.460e-88
Identity = 132/150 (88.00%), Postives = 144/150 (96.00%), Query Frame = 1 
Query:    1 LDETDKRILRVIQRKGRISNADLSEAVNLSPSACHRRVQRLETDGYVKDYVALLDARRMGLPATVFVEIKLTAQADEVLDAFEKAVARVPSVLECHLMAGTADYILKVVAEDTEDFARIHRQYLTRLPGVAQMQSSFALRTVFRTTALPV 450
            LDE D+RILR +Q+ GR+SNADLSE VNLSPSACHRRVQRLE DG ++DYVAL+DAR++GLPATVFVEIKL+AQADEVLDAFEKAVARVP+VLECHLMAGTADYILKVVAEDTEDFARIHRQYLTRLPGVAQMQSSFALRTVF+TTALPV
Sbjct:    3 LDEIDRRILRALQKHGRMSNADLSEQVNLSPSACHRRVQRLEDDGLIRDYVALVDARKLGLPATVFVEIKLSAQADEVLDAFEKAVARVPAVLECHLMAGTADYILKVVAEDTEDFARIHRQYLTRLPGVAQMQSSFALRTVFKTTALPV 152
[Close]
BLAST of mRNA_C-australica_Contig_10171.2.1 vs. uniprot
Match: A0A8J8B7M6_9RHOB (Lrp/AsnC family transcriptional regulator n=1 Tax=Aestuariicoccus sp. KMU-90 TaxID=2827239 RepID=A0A8J8B7M6_9RHOB)

HSP 1 Score: 261 bits (666), Expect = 1.700e-87
Identity = 129/149 (86.58%), Postives = 144/149 (96.64%), Query Frame = 1 
Query:    4 DETDKRILRVIQRKGRISNADLSEAVNLSPSACHRRVQRLETDGYVKDYVALLDARRMGLPATVFVEIKLTAQADEVLDAFEKAVARVPSVLECHLMAGTADYILKVVAEDTEDFARIHRQYLTRLPGVAQMQSSFALRTVFRTTALPV 450
            DETD RILR +QR+GR+SNADLSEAVNLSPSACHRRVQRLE++G+++DYVALLDAR+MGLP TVFVEI L+AQAD+VL+AFEKAVARVP+VLECHLMAGTADYILKV+A DTEDFARIHRQYLTRLPGVAQMQSSFALRTVF+TTALPV
Sbjct:    4 DETDLRILRALQRRGRMSNADLSEAVNLSPSACHRRVQRLESEGFIRDYVALLDARKMGLPTTVFVEITLSAQADDVLEAFEKAVARVPAVLECHLMAGTADYILKVIAADTEDFARIHRQYLTRLPGVAQMQSSFALRTVFKTTALPV 152
[Close]
BLAST of mRNA_C-australica_Contig_10171.2.1 vs. uniprot
Match: A3K3F9_9RHOB (Transcriptional regulator, AsnC family protein n=6 Tax=Roseobacteraceae TaxID=2854170 RepID=A3K3F9_9RHOB)

HSP 1 Score: 260 bits (665), Expect = 3.880e-87
Identity = 129/150 (86.00%), Postives = 143/150 (95.33%), Query Frame = 1 
Query:    1 LDETDKRILRVIQRKGRISNADLSEAVNLSPSACHRRVQRLETDGYVKDYVALLDARRMGLPATVFVEIKLTAQADEVLDAFEKAVARVPSVLECHLMAGTADYILKVVAEDTEDFARIHRQYLTRLPGVAQMQSSFALRTVFRTTALPV 450
            LDETD+R+LRV+QRKGR+SNADLSE VNLSPSACHRRVQRLE DGY++DYVALLDAR++ LP TVFVEI L AQADEVL+AFE AV+RVP+VLECHLMAGTADYILKVVAEDTED+ARIHRQYLTRLPGVAQMQSSFAL+TVF+TTALPV
Sbjct:   17 LDETDRRLLRVLQRKGRMSNADLSEQVNLSPSACHRRVQRLEADGYIRDYVALLDARKLSLPTTVFVEITLQAQADEVLEAFETAVSRVPAVLECHLMAGTADYILKVVAEDTEDYARIHRQYLTRLPGVAQMQSSFALKTVFKTTALPV 166
[Close]
BLAST of mRNA_C-australica_Contig_10171.2.1 vs. uniprot
Match: A0A7W6GSQ7_9RHOB (Lrp/AsnC family leucine-responsive transcriptional regulator n=1 Tax=Sagittula marina TaxID=943940 RepID=A0A7W6GSQ7_9RHOB)

HSP 1 Score: 259 bits (661), Expect = 9.840e-87
Identity = 128/150 (85.33%), Postives = 143/150 (95.33%), Query Frame = 1 
Query:    1 LDETDKRILRVIQRKGRISNADLSEAVNLSPSACHRRVQRLETDGYVKDYVALLDARRMGLPATVFVEIKLTAQADEVLDAFEKAVARVPSVLECHLMAGTADYILKVVAEDTEDFARIHRQYLTRLPGVAQMQSSFALRTVFRTTALPV 450
            LDETD+RIL+V+QRKGR+SNA+LSE VNLS SACHRRVQRLETDGY++DYVAL+DAR+MGLP TVFVEI L+ QAD+VLDAFE AV RVP+VLECHLMAGTADYILKV+A+DTEDFARIHRQYLTRLPGVAQMQSSFALRTVF+TTALPV
Sbjct:    3 LDETDRRILKVLQRKGRMSNAELSEHVNLSASACHRRVQRLETDGYIRDYVALVDARKMGLPTTVFVEITLSTQADDVLDAFETAVQRVPAVLECHLMAGTADYILKVIAQDTEDFARIHRQYLTRLPGVAQMQSSFALRTVFKTTALPV 152
[Close]
BLAST of mRNA_C-australica_Contig_10171.2.1 vs. uniprot
Match: X6KWG5_9RHOB (AsnC family transcriptional regulator n=1 Tax=Rhodobacteraceae bacterium PD-2 TaxID=1169855 RepID=X6KWG5_9RHOB)

HSP 1 Score: 259 bits (661), Expect = 9.840e-87
Identity = 130/150 (86.67%), Postives = 142/150 (94.67%), Query Frame = 1 
Query:    1 LDETDKRILRVIQRKGRISNADLSEAVNLSPSACHRRVQRLETDGYVKDYVALLDARRMGLPATVFVEIKLTAQADEVLDAFEKAVARVPSVLECHLMAGTADYILKVVAEDTEDFARIHRQYLTRLPGVAQMQSSFALRTVFRTTALPV 450
            LDETD+RILRV+QR+GRISNADLS AVNLS S+CHRRVQRLE +GYV+DYVALLDARR+G+P TVFVEI L+AQADEVL+AFE AVARVP VLECHLMAGTADYILK+VA DTEDFARIHRQYLTRLPGVAQMQSSFALRTVF+TTALPV
Sbjct:    3 LDETDRRILRVLQRRGRISNADLSGAVNLSASSCHRRVQRLEAEGYVRDYVALLDARRLGMPTTVFVEITLSAQADEVLEAFETAVARVPDVLECHLMAGTADYILKIVAADTEDFARIHRQYLTRLPGVAQMQSSFALRTVFKTTALPV 152
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10171.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E9I5T7_9RHOB4.390e-99100.00AsnC family transcriptional regulator n=1 Tax=Mame... [more]
A0A238JAD8_9RHOB3.070e-9090.00Leucine-responsive regulatory protein n=9 Tax=Rose... [more]
A0A0B3S4T6_9RHOB3.070e-9090.00AsnC family transcriptional regulator n=6 Tax=Rhod... [more]
A0A0P1G8Z3_9RHOB3.070e-9090.00Leucine-responsive regulatory protein n=2 Tax=Rose... [more]
A0A238KXZ2_9RHOB1.460e-8888.00Leucine-responsive regulatory protein n=1 Tax=Mali... [more]
UPI001C389DB01.460e-8888.00Lrp/AsnC family transcriptional regulator n=1 Tax=... [more]
A0A8J8B7M6_9RHOB1.700e-8786.58Lrp/AsnC family transcriptional regulator n=1 Tax=... [more]
A3K3F9_9RHOB3.880e-8786.00Transcriptional regulator, AsnC family protein n=6... [more]
A0A7W6GSQ7_9RHOB9.840e-8785.33Lrp/AsnC family leucine-responsive transcriptional... [more]
X6KWG5_9RHOB9.840e-8786.67AsnC family transcriptional regulator n=1 Tax=Rhod... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10171contigC-australica_Contig_10171:383..835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1121479.AUBS01000005_gene2636
Preferred namealdR
PFAMsAsnC_trans_reg,HTH_24
Model size453
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03719
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.85e-89
EggNOG OGsCOG1522@1|root,COG1522@2|Bacteria,1RI7R@1224|Proteobacteria,2U9CC@28211|Alphaproteobacteria
Descriptiontranscriptional regulator
Cds size453
COG categoryK
BRITEko00000,ko03000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586752.2986324-CDS-C-australica_Contig_10171:382..8351682586752.2986324-CDS-C-australica_Contig_10171:382..835Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10171 383..835 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10171.2.1prot_C-australica_Contig_10171.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10171 383..835 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10171.2.1

>prot_C-australica_Contig_10171.2.1 ID=prot_C-australica_Contig_10171.2.1|Name=mRNA_C-australica_Contig_10171.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=151bp
LDETDKRILRVIQRKGRISNADLSEAVNLSPSACHRRVQRLETDGYVKDY
VALLDARRMGLPATVFVEIKLTAQADEVLDAFEKAVARVPSVLECHLMAG
TADYILKVVAEDTEDFARIHRQYLTRLPGVAQMQSSFALRTVFRTTALPV
*
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mRNA from alignment at C-australica_Contig_10171:383..835-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10171.2.1 ID=mRNA_C-australica_Contig_10171.2.1|Name=mRNA_C-australica_Contig_10171.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=453bp|location=Sequence derived from alignment at C-australica_Contig_10171:383..835- (Chrysoparadoxa australica CS_1217)
CTTGACGAGACAGACAAGCGTATCTTGCGCGTGATCCAGCGCAAGGGGCG
CATTTCGAATGCCGACCTGTCGGAGGCCGTCAACCTGTCTCCCTCAGCCT
GTCACCGGCGGGTGCAGCGATTGGAAACCGACGGCTATGTGAAGGACTAT
GTCGCCCTGCTGGATGCGCGGCGGATGGGACTGCCTGCGACAGTCTTTGT
CGAGATCAAGCTGACGGCGCAGGCCGATGAGGTTCTGGATGCCTTCGAGA
AGGCGGTGGCGCGAGTGCCTTCGGTGCTGGAGTGTCATCTGATGGCCGGG
ACGGCGGATTACATTTTGAAGGTGGTGGCCGAAGATACAGAGGATTTCGC
CCGCATCCACCGGCAGTACCTGACCCGGCTGCCGGGCGTGGCGCAGATGC
AGAGTTCCTTTGCGTTGCGCACGGTATTTCGGACGACGGCGCTGCCAGTC
TGA
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Coding sequence (CDS) from alignment at C-australica_Contig_10171:383..835-

>mRNA_C-australica_Contig_10171.2.1 ID=mRNA_C-australica_Contig_10171.2.1|Name=mRNA_C-australica_Contig_10171.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=453bp|location=Sequence derived from alignment at C-australica_Contig_10171:383..835- (Chrysoparadoxa australica CS_1217)
CTTGACGAGACAGACAAGCGTATCTTGCGCGTGATCCAGCGCAAGGGGCG
CATTTCGAATGCCGACCTGTCGGAGGCCGTCAACCTGTCTCCCTCAGCCT
GTCACCGGCGGGTGCAGCGATTGGAAACCGACGGCTATGTGAAGGACTAT
GTCGCCCTGCTGGATGCGCGGCGGATGGGACTGCCTGCGACAGTCTTTGT
CGAGATCAAGCTGACGGCGCAGGCCGATGAGGTTCTGGATGCCTTCGAGA
AGGCGGTGGCGCGAGTGCCTTCGGTGCTGGAGTGTCATCTGATGGCCGGG
ACGGCGGATTACATTTTGAAGGTGGTGGCCGAAGATACAGAGGATTTCGC
CCGCATCCACCGGCAGTACCTGACCCGGCTGCCGGGCGTGGCGCAGATGC
AGAGTTCCTTTGCGTTGCGCACGGTATTTCGGACGACGGCGCTGCCAGTC
TGA
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