mRNA_C-australica_Contig_10169.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10169.1.1
Unique NamemRNA_C-australica_Contig_10169.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10169.1.1 vs. uniprot
Match: A0A2E9HV92_9RHOB (Methyl-accepting transducer domain-containing protein n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A2E9HV92_9RHOB)

HSP 1 Score: 503 bits (1296), Expect = 1.010e-175
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 1
Query:    1 LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGLHMVLVVLEGGVLAVAILQRRKAHEQIEQAAIRLETERRMAADAQAEAEAAHRVSQEVIHEVRIALSRLSGRDMTCAIARAFPPTYEIMREDFNTTVETLRDAFLNANDLAGTFTAEALVLAQEMIDMSGQSDLQAKRLAEMTGSAASLLDRLAKTVDQAGQAAAAAEQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVAFQTNLLALNAGVEAARAGQ 831
            LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGLHMVLVVLEGGVLAVAILQRRKAHEQIEQAAIRLETERRMAADAQAEAEAAHRVSQEVIHEVRIALSRLSGRDMTCAIARAFPPTYEIMREDFNTTVETLRDAFLNANDLAGTFTAEALVLAQEMIDMSGQSDLQAKRLAEMTGSAASLLDRLAKTVDQAGQAAAAAEQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVAFQTNLLALNAGVEAARAGQ
Sbjct:  101 LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGLHMVLVVLEGGVLAVAILQRRKAHEQIEQAAIRLETERRMAADAQAEAEAAHRVSQEVIHEVRIALSRLSGRDMTCAIARAFPPTYEIMREDFNTTVETLRDAFLNANDLAGTFTAEALVLAQEMIDMSGQSDLQAKRLAEMTGSAASLLDRLAKTVDQAGQAAAAAEQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVAFQTNLLALNAGVEAARAGQ 377          
BLAST of mRNA_C-australica_Contig_10169.1.1 vs. uniprot
Match: A0A239FQE0_9RHOB (Methyl-accepting chemotaxis protein n=1 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239FQE0_9RHOB)

HSP 1 Score: 436 bits (1121), Expect = 3.620e-149
Identity = 244/276 (88.41%), Postives = 256/276 (92.75%), Query Frame = 1
Query:    1 LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGLHMVLVVLEGGVLAVAILQRRKAHEQIEQAAIRLETERRMAADAQAEAEAAHRVSQEVIHEVRIALSRLSGRDMTCAIARAFPPTYEIMREDFNTTVETLRDAFLNANDLAGTFTAEALVLAQEMIDMSGQSDLQAKRLAEMTGSAASLLDRLAKTVDQAGQAAAAAEQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVAFQTNLLALNAGVEAARAG 828
            LAIIST RRVR LI ACA+TS FL AAAFYWPTPGLP+ ES AALL GGLH+ LVVLEGGVLAVAILQRRKA EQIEQAAIRLETERRMAADAQAEAE+A RVSQEVI EVRIALSRLSGRDMTC+IAR FP TYEIMREDFNTTVETLRDAFLNA+DLAG FTAEA VLAQEMIDMSG+SD QAK L EMTGS+A+LLDRLAKTV+QAGQAAA+A QARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDV+FQTNLLALNAGVEAARAG
Sbjct:  101 LAIISTQRRVRALILACALTSAFLLAAAFYWPTPGLPLVESRAALLQGGLHLALVVLEGGVLAVAILQRRKAREQIEQAAIRLETERRMAADAQAEAESAQRVSQEVIDEVRIALSRLSGRDMTCSIARPFPQTYEIMREDFNTTVETLRDAFLNASDLAGVFTAEAQVLAQEMIDMSGRSDQQAKHLQEMTGSSANLLDRLAKTVEQAGQAAASAGQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVSFQTNLLALNAGVEAARAG 376          
BLAST of mRNA_C-australica_Contig_10169.1.1 vs. uniprot
Match: UPI001CD47C30 (methyl-accepting chemotaxis protein n=3 Tax=Rhodobacterales TaxID=204455 RepID=UPI001CD47C30)

HSP 1 Score: 324 bits (830), Expect = 3.420e-105
Identity = 185/276 (67.03%), Postives = 217/276 (78.62%), Query Frame = 1
Query:    1 LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGLHMVLVVLEGGVLAVAILQRRKAHEQIEQAAIRLETERRMAADAQAEAEAAHRVSQEVIHEVRIALSRLSGRDMTCAIARAFPPTYEIMREDFNTTVETLRDAFLNANDLAGTFTAEALVLAQEMIDMSGQSDLQAKRLAEMTGSAASLLDRLAKTVDQAGQAAAAAEQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVAFQTNLLALNAGVEAARAG 828
            LA++STL  V VL WAC +T+V LF     W     P  E G+ LL G LH+ +V+LEGGVLA +++QR+KA E++ Q   RLETERRMAADAQAEAEAA+ V+QEVI +VR+AL+RLSGRDMTC I + FP  YEIMREDFNTTVETLRD+FL+AN LAG+FT +A  LAQ+MI +SGQS  Q  RLAEMT +A  LL     TV +A QAA+AA QAR SAERI  VTTQA+TAMRGIEDSSR+IS+IVDLIDDVAFQTNLLALNAGVEAARAG
Sbjct:  100 LAVVSTLGSVPVLAWACGLTAVHLFGVGTVWLALVWPAGEGGSILLRGLLHLAVVLLEGGVLATSMIQRKKARERLAQTNARLETERRMAADAQAEAEAANIVAQEVIAQVRVALTRLSGRDMTCRIDQPFPEAYEIMREDFNTTVETLRDSFLSANALAGSFTTDAQGLAQDMIALSGQSGNQVDRLAEMTTAATQLLQAFEATVQEAKQAASAAGQARASAERIGTVTTQAITAMRGIEDSSREISQIVDLIDDVAFQTNLLALNAGVEAARAG 375          
BLAST of mRNA_C-australica_Contig_10169.1.1 vs. uniprot
Match: A0A238L6Y2_9RHOB (Methyl-accepting chemotaxis protein II n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238L6Y2_9RHOB)

HSP 1 Score: 277 bits (708), Expect = 7.120e-87
Identity = 166/277 (59.93%), Postives = 204/277 (73.65%), Query Frame = 1
Query:    1 LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGLHMVLVVLEGGVLAVAILQRRKAHEQIEQAAIRLETERRMAADAQAEAEAAHRVSQEVIHEVRIALSRLSGRDMTCAIARAFPPTYEIMREDFNTTVETLRDAFLNANDLAGTFTAEALVLAQEMIDMSGQSDLQAKRLAEMTGSAASLLDRLAKTVDQAGQAAAAAEQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVAFQTNLLALNAGVEAARAGQ 831
            LAI++TLR VR L+ AC +T V L      WP    P +E   AL  G LH V+V+LEGGVL +AIL+RR A  ++ Q A RL+TERR+A DA+ EAE   R ++ VI  VR+ALSRL+GRDMTC+I+  FP  YE+MR+DFNTTVETLR+AFLNANDL  +FT +A  LA+E+I  SG++  Q +RL  M+  AA L + L  TV+QA +AA AA QAR SAE    VT QA+ AMRGIEDSSR+IS+IVDLIDDV+FQTNLLALNAGVEAARAGQ
Sbjct:  100 LAIVATLRSVRALLLACGVTLVHLLLVGQVWPGLVWPPSEPSGAL-RGLLHAVVVMLEGGVLVMAILRRRAAETRVAQTAERLDTERRIAEDARREAEDNIRTTRLVIDAVRVALSRLAGRDMTCSISAPFPAAYEVMRQDFNTTVETLREAFLNANDLGKSFTRDAQSLAEEIIGHSGKTAKQVQRLEGMSADAAKLRELLTATVEQAHKAAEAAGQARGSAEHGGEVTAQAIRAMRGIEDSSREISQIVDLIDDVSFQTNLLALNAGVEAARAGQ 375          
BLAST of mRNA_C-australica_Contig_10169.1.1 vs. uniprot
Match: A0A238L688_9RHOB (Methyl-accepting chemotaxis protein I n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238L688_9RHOB)

HSP 1 Score: 243 bits (620), Expect = 1.080e-73
Identity = 141/277 (50.90%), Postives = 191/277 (68.95%), Query Frame = 1
Query:    1 LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGLHMVLVVLEGGVLAVAILQRRKAHEQIEQAAIRLETERRMAADAQAEAEAAHRVSQEVIHEVRIALSRLSGRDMTCAIARAFPPTYEIMREDFNTTVETLRDAFLNANDLAGTFTAEALVLAQEMIDMSGQSDLQAKRLAEMTGSAASLLDRLAKTVDQAGQAAAAAEQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVAFQTNLLALNAGVEAARAGQ 831
            LAI+ST+ RV VL+WACA+T++   A     P    P  +    +L  G+H  +VV+EG VLA+A++QR +   ++E+ A RLETE RMAADAQAE+ AA   + EVI  +R AL  L+ RDMTC I   FP  YE++R DFN T++ LR AF    DL G F  E+  L++ +  +S +++ QA+ L+EMT + A L++ L +T  QA  AA++A+ AR+SA R   VT +A+ AMR IEDSSRQI++IVDLIDDV+FQTNLLALNAGVEAARAG+
Sbjct:  100 LAIVSTIGRVSVLVWACAVTALHHLALTLVLPVLVYPSVDLWVNILRTGVHGAIVVIEGAVLAIAMVQRNEVMTEVERTAARLETETRMAADAQAESAAAQARADEVIARMRAALGALAQRDMTCRIDDPFPAQYEVLRRDFNLTMDNLRTAFRGVRDLTGAFLTESAELSRAVGGLSDRTEAQAQSLSEMTRTTADLVEALGQTATQARDAASSADDARSSAVRGGQVTERAIAAMRKIEDSSRQIAQIVDLIDDVSFQTNLLALNAGVEAARAGE 376          
BLAST of mRNA_C-australica_Contig_10169.1.1 vs. uniprot
Match: A3K668_9RHOB (Methyl-accepting chemotaxis sensory transducer n=1 Tax=Sagittula stellata E-37 TaxID=388399 RepID=A3K668_9RHOB)

HSP 1 Score: 205 bits (521), Expect = 5.470e-59
Identity = 125/277 (45.13%), Postives = 177/277 (63.90%), Query Frame = 1
Query:    1 LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGLHMVLVVLEGGVLAVAILQRRKAHEQIEQAAIRLETERRMAADAQAEAEAAHRVSQEVIHEVRIALSRLSGRDMTCAIARAFPPTYEIMREDFNTTVETLRDAFLNANDLAGTFTAEALVLAQEMIDMSGQSDLQAKRLAEMTGSAASLLDRLAKTVDQAGQAAAAAEQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVAFQTNLLALNAGVEAARAGQ 831
            LA+++   R+ VLI+AC +T+V  FA     P    P  +    +    LH  +V LEG VL +A+  R     ++   +  LE   RMA DA+ + +AAH+ +  VI E+RI LSRL+GRD+   I   FP  YEI+R +FN TV  LRDAF NA+ +   F+ ++  L+Q M +++  +++Q++ L+EMT +  +L+D L+KT +QA  AA ++ +AR SA     VT  A+ AMR IE+SSRQI  IVDLIDDV+FQTNLLALNAGVEAARAG+
Sbjct:  100 LAVVAIPGRIDVLIYACIITAVHHFAFTVALPALVYPTGDLMTNVARTALHAAIVALEGVVLGLAVHDRSATLARVHNKSRALEVGTRMAEDARLDVQAAHQSASRVIEEMRIGLSRLAGRDLCFGIRDPFPAQYEILRSEFNVTVSILRDAFANASAVVDGFSTDSQGLSQTMNELAALAEVQSRALSEMTAATETLVDALSKTAEQARDAAQSSGEARDSAVDGTEVTAAAIAAMRAIEESSRQIGTIVDLIDDVSFQTNLLALNAGVEAARAGE 376          
BLAST of mRNA_C-australica_Contig_10169.1.1 vs. uniprot
Match: A0A0W7WM04_9RHOB (Uncharacterized protein n=2 Tax=Ponticoccus marisrubri TaxID=1685382 RepID=A0A0W7WM04_9RHOB)

HSP 1 Score: 198 bits (503), Expect = 3.020e-56
Identity = 126/276 (45.65%), Postives = 170/276 (61.59%), Query Frame = 1
Query:    1 LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGLHMVLVVLEGGVLAVAILQRRKAHEQIEQAAIRLETERRMAADAQAEAEAAHRVSQEVIHEVRIALSRLSGRDMTCAIARAFPPTYEIMREDFNTTVETLRDAFLNANDLAGTFTAEALVLAQEMIDMSGQSDLQAKRLAEMTGSAASLLDRLAKTVDQAGQAAAAAEQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVAFQTNLLALNAGVEAARAG 828
            LAI S    V ++ WACA+T++         P    P  E    L    LH ++VV+EGGVLAVAI QR    ++I +A  R+ETER+MAADAQ+EAE++   ++ VI + R AL+RL+ RD+TCA+    P  YEI+R DFN  V TLR AF  A+D+A +F+ +A  LA  M  +S ++  Q  RL+ +  +  +LL+ +  T  QA  AA +A                 + AM+ IE SSR+IS+IVDLIDDV+FQTNLLALNAGVEAARAG
Sbjct:  113 LAIASASGHVGLVAWACALTALHHLGLTLALPALVYPSAELMQNLERTALHGIIVVIEGGVLAVAIAQRNAMTDEIARARDRMETERQMAADAQSEAESSREQARRVIADFRSALARLAARDLTCAMQDPLPAQYEILRTDFNEAVATLRAAFAKADDVADSFSDDAQALAGSMSALSTEAGEQVGRLSNINDTTGALLEMVQDTARQATSAAQSAGXXXXXXXXXXXXXXXXIRAMQAIEHSSREISKIVDLIDDVSFQTNLLALNAGVEAARAG 388          
BLAST of mRNA_C-australica_Contig_10169.1.1 vs. uniprot
Match: A0A2K8WGX4_9RHOB (Chemotaxis protein n=2 Tax=Sagittula sp. P11 TaxID=2009329 RepID=A0A2K8WGX4_9RHOB)

HSP 1 Score: 192 bits (488), Expect = 5.240e-54
Identity = 122/277 (44.04%), Postives = 167/277 (60.29%), Query Frame = 1
Query:    1 LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGLHMVLVVLEGGVLAVAILQRRKAHEQIEQAAIRLETERRMAADAQAEAEAAHRVSQEVIHEVRIALSRLSGRDMTCAIARAFPPTYEIMREDFNTTVETLRDAFLNANDLAGTFTAEALVLAQEMIDMSGQSDLQAKRLAEMTGSAASLLDRLAKTVDQAGQAAAAAEQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVAFQTNLLALNAGVEAARAGQ 831
            LA+I+   R+ VLI+ACA+T++         P    P  E    L    LH  +VVLEG VL +A   R  +  QI + +  LE   +MA DA+ E +AAH+ +  VI E+RIALSRL+GRD+   I   FP  YE++R +FN TV TLR+AF +A+D+ G F+ ++  L+  M D++  S++Q++ LAEMT +  +L+D L    +Q                    VT  A+ AMR IE+ SRQI  IVDLIDDV+FQTNLLALNAGVEAARAG+
Sbjct:  113 LAVIAIPGRIDVLIYACAITALHHLLLTVALPALVYPTAELTTNLARTALHGGIVVLEGVVLGLAARDRNASLAQIRRKSRELEIGTQMAEDARLEVQAAHQAASRVIEEMRIALSRLAGRDLCFGIQGPFPAQYEVLRSEFNMTVGTLREAFASASDVVGGFSTDSQSLSHTMNDLAALSEVQSRALAEMTAATETLVDVLXXXXEQXXXXXXXXXXXXXXXXXXXXVTAAAIAAMRAIEEGSRQIESIVDLIDDVSFQTNLLALNAGVEAARAGE 389          
BLAST of mRNA_C-australica_Contig_10169.1.1 vs. uniprot
Match: A0A238K6F3_9RHOB (Aerotaxis receptor n=2 Tax=Pelagimonas varians TaxID=696760 RepID=A0A238K6F3_9RHOB)

HSP 1 Score: 181 bits (460), Expect = 1.330e-49
Identity = 117/277 (42.24%), Postives = 162/277 (58.48%), Query Frame = 1
Query:    1 LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGLHMVLVVLEGGVLAVAILQRRKAHEQIEQAAIRLETERRMAADAQAEAEAAHRVSQEVIHEVRIALSRLSGRDMTCAIARAFPPTYEIMREDFNTTVETLRDAFLNANDLAGTFTAEALVLAQEMIDMSGQSDLQAKRLAEMTGSAASLLDRLAKTVDQAGQAAAAAEQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVAFQTNLLALNAGVEAARAGQ 831
            LA++ST+ R+ VL WA ++T       A   P+   P       L   G H  +V++E  +LA+AI QR     +IE  +  LE E R+ ADA  +A+ AH  ++ VI  +R  L++L+GR++TC I   FP  Y+++REDFN  VETLR+AF  A+ +A     +A+ L + +  MS  +D QA  L +M  +A  L   LAKT +QA  AA +A                    M+ IE SSR+IS+IVDLIDDV+FQTNLLALNAGVEAARAG+
Sbjct:  167 LALVSTMGRIPVLFWASSLTIAHQMVLATVAPSLLFPSAGLVENLTRSGFHSGVVLIEAFILAIAIAQRTADARKIEIKSKELEAETRLTADAHKDAQEAHEKARSVIAALRNTLTQLAGRNLTCHIQDGFPEEYDVLREDFNIAVETLREAFSRADGVADELALDAMQLVKAVHSMSQLTDAQAGSLTDMNTTATELKAALAKTAEQASHAAMSAGXXXXXXXXXXXXXXXXXXXMQMIESSSREISQIVDLIDDVSFQTNLLALNAGVEAARAGE 443          
BLAST of mRNA_C-australica_Contig_10169.1.1 vs. uniprot
Match: A0A238W2A2_9RHOB (Methyl-accepting chemotaxis sensory transducer n=1 Tax=Puniceibacterium sediminis TaxID=1608407 RepID=A0A238W2A2_9RHOB)

HSP 1 Score: 177 bits (450), Expect = 1.250e-48
Identity = 120/277 (43.32%), Postives = 164/277 (59.21%), Query Frame = 1
Query:    1 LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGLHMVLVVLEGGVLAVAILQRRKAHEQIEQAAIRLETERRMAADAQAEAEAAHRVSQEVIHEVRIALSRLSGRDMTCAIARAFPPTYEIMREDFNTTVETLRDAFLNANDLAGTFTAEALVLAQEMIDMSGQSDLQAKRLAEMTGSAASLLDRLAKTVDQAGQAAAAAEQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVAFQTNLLALNAGVEAARAGQ 831
            LA++ST     VLI ACA+T+V     +   P+   P  +    L    LH +LVVLEGGVL + ILQR K    ++  A  L+     AA+AQ  AE A   ++ V+   RI+L RL+  ++ CA+  +FP +YE +R DFN  +E LRD   NA   +  F AEA  L+    D+S +++ QA  L+   G+   L   L++T D A  AA  A  AR SAE    VT QA+ AM+ IE SSR+I +++ LIDD++FQTNLLALNAGVEAARAG+
Sbjct:   99 LAVVSTRSHAGVLILACAVTAVHHLLLSILLPSLIYPSFDIVENLQRTVLHGLLVVLEGGVLTMTILQRTKLSRDMKSQAEDLQDSSHAAAEAQKRAERAQSEAEGVVSAFRISLQRLADCNLDCALTDSFPESYEELRADFNGAIEMLRDTLQNAAATSHDFDAEARELSAATSDLSTRTERQAGALSGAAGAMQHLNASLSETADGARNAAEMAAAARESAETGTEVTLQAIEAMKLIETSSREILKVIQLIDDISFQTNLLALNAGVEAARAGE 375          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10169.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E9HV92_9RHOB1.010e-175100.00Methyl-accepting transducer domain-containing prot... [more]
A0A239FQE0_9RHOB3.620e-14988.41Methyl-accepting chemotaxis protein n=1 Tax=Antarc... [more]
UPI001CD47C303.420e-10567.03methyl-accepting chemotaxis protein n=3 Tax=Rhodob... [more]
A0A238L6Y2_9RHOB7.120e-8759.93Methyl-accepting chemotaxis protein II n=1 Tax=Mal... [more]
A0A238L688_9RHOB1.080e-7350.90Methyl-accepting chemotaxis protein I n=1 Tax=Mali... [more]
A3K668_9RHOB5.470e-5945.13Methyl-accepting chemotaxis sensory transducer n=1... [more]
A0A0W7WM04_9RHOB3.020e-5645.65Uncharacterized protein n=2 Tax=Ponticoccus marisr... [more]
A0A2K8WGX4_9RHOB5.240e-5444.04Chemotaxis protein n=2 Tax=Sagittula sp. P11 TaxID... [more]
A0A238K6F3_9RHOB1.330e-4942.24Aerotaxis receptor n=2 Tax=Pelagimonas varians Tax... [more]
A0A238W2A2_9RHOB1.250e-4843.32Methyl-accepting chemotaxis sensory transducer n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10169contigC-australica_Contig_10169:3..833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog388399.SSE37_06264
PFAMsMCPsignal
Model size831
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03406
KEGG Pathwayko02020,ko02030,map02020,map02030
Hectar predicted targeting categorysignal peptide
Exons1
Evalue8.97e-60
EggNOG OGsCOG0840@1|root,COG0840@2|Bacteria,1MU9B@1224|Proteobacteria,2TQQE@28211|Alphaproteobacteria
Descriptionmethyl-accepting chemotaxis protein
Cds size831
COG categoryNT
BRITEko00000,ko00001,ko02035
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586751.4782426-CDS-C-australica_Contig_10169:2..8331682586751.4782426-CDS-C-australica_Contig_10169:2..833Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10169 3..833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10169.1.1prot_C-australica_Contig_10169.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10169 3..833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10169.1.1

>prot_C-australica_Contig_10169.1.1 ID=prot_C-australica_Contig_10169.1.1|Name=mRNA_C-australica_Contig_10169.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=277bp
LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGL
HMVLVVLEGGVLAVAILQRRKAHEQIEQAAIRLETERRMAADAQAEAEAA
HRVSQEVIHEVRIALSRLSGRDMTCAIARAFPPTYEIMREDFNTTVETLR
DAFLNANDLAGTFTAEALVLAQEMIDMSGQSDLQAKRLAEMTGSAASLLD
RLAKTVDQAGQAAAAAEQARTSAERIDAVTTQAVTAMRGIEDSSRQISRI
VDLIDDVAFQTNLLALNAGVEAARAGQ
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mRNA from alignment at C-australica_Contig_10169:3..833+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10169.1.1 ID=mRNA_C-australica_Contig_10169.1.1|Name=mRNA_C-australica_Contig_10169.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=831bp|location=Sequence derived from alignment at C-australica_Contig_10169:3..833+ (Chrysoparadoxa australica CS_1217)
TTGGCGATCATCTCGACCCTGCGGCGGGTGCGTGTGCTGATCTGGGCCTG TGCGATGACATCGGTCTTTCTGTTCGCAGCGGCGTTCTACTGGCCGACGC CGGGACTGCCGATGACAGAAAGCGGCGCGGCACTGTTGCACGGCGGGTTG CACATGGTGCTTGTGGTGCTCGAAGGCGGGGTATTGGCAGTCGCGATCTT GCAACGGCGCAAAGCGCACGAACAGATCGAACAGGCCGCAATTCGGCTGG AGACAGAGCGCCGCATGGCCGCAGATGCTCAGGCGGAGGCGGAAGCAGCA CATCGCGTGTCGCAAGAGGTCATTCATGAGGTGCGCATTGCGCTGTCACG GCTGAGCGGGCGGGACATGACCTGCGCGATTGCCCGTGCCTTTCCTCCGA CTTACGAGATCATGCGCGAGGATTTCAACACCACTGTCGAAACCCTGCGC GACGCCTTTTTGAACGCCAATGATCTTGCCGGGACCTTCACCGCAGAGGC GCTGGTGTTGGCACAAGAGATGATCGACATGTCCGGCCAGTCCGATCTAC AGGCAAAGCGTCTGGCTGAAATGACAGGCTCTGCCGCCAGCCTTCTCGAC AGGTTGGCCAAGACCGTGGATCAGGCCGGTCAGGCCGCCGCCGCAGCCGA ACAGGCGCGCACCAGCGCAGAGCGGATTGATGCCGTGACCACCCAGGCGG TGACCGCCATGCGCGGGATTGAGGACAGCTCACGCCAGATTTCCCGGATC GTCGATCTGATTGACGATGTGGCGTTCCAGACCAATCTGCTGGCGCTGAA TGCCGGGGTTGAGGCGGCGCGCGCCGGGCAG
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Coding sequence (CDS) from alignment at C-australica_Contig_10169:3..833+

>mRNA_C-australica_Contig_10169.1.1 ID=mRNA_C-australica_Contig_10169.1.1|Name=mRNA_C-australica_Contig_10169.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=831bp|location=Sequence derived from alignment at C-australica_Contig_10169:3..833+ (Chrysoparadoxa australica CS_1217)
TTGGCGATCATCTCGACCCTGCGGCGGGTGCGTGTGCTGATCTGGGCCTG
TGCGATGACATCGGTCTTTCTGTTCGCAGCGGCGTTCTACTGGCCGACGC
CGGGACTGCCGATGACAGAAAGCGGCGCGGCACTGTTGCACGGCGGGTTG
CACATGGTGCTTGTGGTGCTCGAAGGCGGGGTATTGGCAGTCGCGATCTT
GCAACGGCGCAAAGCGCACGAACAGATCGAACAGGCCGCAATTCGGCTGG
AGACAGAGCGCCGCATGGCCGCAGATGCTCAGGCGGAGGCGGAAGCAGCA
CATCGCGTGTCGCAAGAGGTCATTCATGAGGTGCGCATTGCGCTGTCACG
GCTGAGCGGGCGGGACATGACCTGCGCGATTGCCCGTGCCTTTCCTCCGA
CTTACGAGATCATGCGCGAGGATTTCAACACCACTGTCGAAACCCTGCGC
GACGCCTTTTTGAACGCCAATGATCTTGCCGGGACCTTCACCGCAGAGGC
GCTGGTGTTGGCACAAGAGATGATCGACATGTCCGGCCAGTCCGATCTAC
AGGCAAAGCGTCTGGCTGAAATGACAGGCTCTGCCGCCAGCCTTCTCGAC
AGGTTGGCCAAGACCGTGGATCAGGCCGGTCAGGCCGCCGCCGCAGCCGA
ACAGGCGCGCACCAGCGCAGAGCGGATTGATGCCGTGACCACCCAGGCGG
TGACCGCCATGCGCGGGATTGAGGACAGCTCACGCCAGATTTCCCGGATC
GTCGATCTGATTGACGATGTGGCGTTCCAGACCAATCTGCTGGCGCTGAA
TGCCGGGGTTGAGGCGGCGCGCGCCGGGCAG
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