mRNA_C-australica_Contig_10169.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10169.1.1 vs. uniprot
Match: A0A2E9HV92_9RHOB (Methyl-accepting transducer domain-containing protein n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A2E9HV92_9RHOB) HSP 1 Score: 503 bits (1296), Expect = 1.010e-175 Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 1 Query: 1 LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGLHMVLVVLEGGVLAVAILQRRKAHEQIEQAAIRLETERRMAADAQAEAEAAHRVSQEVIHEVRIALSRLSGRDMTCAIARAFPPTYEIMREDFNTTVETLRDAFLNANDLAGTFTAEALVLAQEMIDMSGQSDLQAKRLAEMTGSAASLLDRLAKTVDQAGQAAAAAEQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVAFQTNLLALNAGVEAARAGQ 831 LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGLHMVLVVLEGGVLAVAILQRRKAHEQIEQAAIRLETERRMAADAQAEAEAAHRVSQEVIHEVRIALSRLSGRDMTCAIARAFPPTYEIMREDFNTTVETLRDAFLNANDLAGTFTAEALVLAQEMIDMSGQSDLQAKRLAEMTGSAASLLDRLAKTVDQAGQAAAAAEQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVAFQTNLLALNAGVEAARAGQ Sbjct: 101 LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGLHMVLVVLEGGVLAVAILQRRKAHEQIEQAAIRLETERRMAADAQAEAEAAHRVSQEVIHEVRIALSRLSGRDMTCAIARAFPPTYEIMREDFNTTVETLRDAFLNANDLAGTFTAEALVLAQEMIDMSGQSDLQAKRLAEMTGSAASLLDRLAKTVDQAGQAAAAAEQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVAFQTNLLALNAGVEAARAGQ 377
BLAST of mRNA_C-australica_Contig_10169.1.1 vs. uniprot
Match: A0A239FQE0_9RHOB (Methyl-accepting chemotaxis protein n=1 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239FQE0_9RHOB) HSP 1 Score: 436 bits (1121), Expect = 3.620e-149 Identity = 244/276 (88.41%), Postives = 256/276 (92.75%), Query Frame = 1 Query: 1 LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGLHMVLVVLEGGVLAVAILQRRKAHEQIEQAAIRLETERRMAADAQAEAEAAHRVSQEVIHEVRIALSRLSGRDMTCAIARAFPPTYEIMREDFNTTVETLRDAFLNANDLAGTFTAEALVLAQEMIDMSGQSDLQAKRLAEMTGSAASLLDRLAKTVDQAGQAAAAAEQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVAFQTNLLALNAGVEAARAG 828 LAIIST RRVR LI ACA+TS FL AAAFYWPTPGLP+ ES AALL GGLH+ LVVLEGGVLAVAILQRRKA EQIEQAAIRLETERRMAADAQAEAE+A RVSQEVI EVRIALSRLSGRDMTC+IAR FP TYEIMREDFNTTVETLRDAFLNA+DLAG FTAEA VLAQEMIDMSG+SD QAK L EMTGS+A+LLDRLAKTV+QAGQAAA+A QARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDV+FQTNLLALNAGVEAARAG Sbjct: 101 LAIISTQRRVRALILACALTSAFLLAAAFYWPTPGLPLVESRAALLQGGLHLALVVLEGGVLAVAILQRRKAREQIEQAAIRLETERRMAADAQAEAESAQRVSQEVIDEVRIALSRLSGRDMTCSIARPFPQTYEIMREDFNTTVETLRDAFLNASDLAGVFTAEAQVLAQEMIDMSGRSDQQAKHLQEMTGSSANLLDRLAKTVEQAGQAAASAGQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVSFQTNLLALNAGVEAARAG 376
BLAST of mRNA_C-australica_Contig_10169.1.1 vs. uniprot
Match: UPI001CD47C30 (methyl-accepting chemotaxis protein n=3 Tax=Rhodobacterales TaxID=204455 RepID=UPI001CD47C30) HSP 1 Score: 324 bits (830), Expect = 3.420e-105 Identity = 185/276 (67.03%), Postives = 217/276 (78.62%), Query Frame = 1 Query: 1 LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGLHMVLVVLEGGVLAVAILQRRKAHEQIEQAAIRLETERRMAADAQAEAEAAHRVSQEVIHEVRIALSRLSGRDMTCAIARAFPPTYEIMREDFNTTVETLRDAFLNANDLAGTFTAEALVLAQEMIDMSGQSDLQAKRLAEMTGSAASLLDRLAKTVDQAGQAAAAAEQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVAFQTNLLALNAGVEAARAG 828 LA++STL V VL WAC +T+V LF W P E G+ LL G LH+ +V+LEGGVLA +++QR+KA E++ Q RLETERRMAADAQAEAEAA+ V+QEVI +VR+AL+RLSGRDMTC I + FP YEIMREDFNTTVETLRD+FL+AN LAG+FT +A LAQ+MI +SGQS Q RLAEMT +A LL TV +A QAA+AA QAR SAERI VTTQA+TAMRGIEDSSR+IS+IVDLIDDVAFQTNLLALNAGVEAARAG Sbjct: 100 LAVVSTLGSVPVLAWACGLTAVHLFGVGTVWLALVWPAGEGGSILLRGLLHLAVVLLEGGVLATSMIQRKKARERLAQTNARLETERRMAADAQAEAEAANIVAQEVIAQVRVALTRLSGRDMTCRIDQPFPEAYEIMREDFNTTVETLRDSFLSANALAGSFTTDAQGLAQDMIALSGQSGNQVDRLAEMTTAATQLLQAFEATVQEAKQAASAAGQARASAERIGTVTTQAITAMRGIEDSSREISQIVDLIDDVAFQTNLLALNAGVEAARAG 375
BLAST of mRNA_C-australica_Contig_10169.1.1 vs. uniprot
Match: A0A238L6Y2_9RHOB (Methyl-accepting chemotaxis protein II n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238L6Y2_9RHOB) HSP 1 Score: 277 bits (708), Expect = 7.120e-87 Identity = 166/277 (59.93%), Postives = 204/277 (73.65%), Query Frame = 1 Query: 1 LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGLHMVLVVLEGGVLAVAILQRRKAHEQIEQAAIRLETERRMAADAQAEAEAAHRVSQEVIHEVRIALSRLSGRDMTCAIARAFPPTYEIMREDFNTTVETLRDAFLNANDLAGTFTAEALVLAQEMIDMSGQSDLQAKRLAEMTGSAASLLDRLAKTVDQAGQAAAAAEQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVAFQTNLLALNAGVEAARAGQ 831 LAI++TLR VR L+ AC +T V L WP P +E AL G LH V+V+LEGGVL +AIL+RR A ++ Q A RL+TERR+A DA+ EAE R ++ VI VR+ALSRL+GRDMTC+I+ FP YE+MR+DFNTTVETLR+AFLNANDL +FT +A LA+E+I SG++ Q +RL M+ AA L + L TV+QA +AA AA QAR SAE VT QA+ AMRGIEDSSR+IS+IVDLIDDV+FQTNLLALNAGVEAARAGQ Sbjct: 100 LAIVATLRSVRALLLACGVTLVHLLLVGQVWPGLVWPPSEPSGAL-RGLLHAVVVMLEGGVLVMAILRRRAAETRVAQTAERLDTERRIAEDARREAEDNIRTTRLVIDAVRVALSRLAGRDMTCSISAPFPAAYEVMRQDFNTTVETLREAFLNANDLGKSFTRDAQSLAEEIIGHSGKTAKQVQRLEGMSADAAKLRELLTATVEQAHKAAEAAGQARGSAEHGGEVTAQAIRAMRGIEDSSREISQIVDLIDDVSFQTNLLALNAGVEAARAGQ 375
BLAST of mRNA_C-australica_Contig_10169.1.1 vs. uniprot
Match: A0A238L688_9RHOB (Methyl-accepting chemotaxis protein I n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238L688_9RHOB) HSP 1 Score: 243 bits (620), Expect = 1.080e-73 Identity = 141/277 (50.90%), Postives = 191/277 (68.95%), Query Frame = 1 Query: 1 LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGLHMVLVVLEGGVLAVAILQRRKAHEQIEQAAIRLETERRMAADAQAEAEAAHRVSQEVIHEVRIALSRLSGRDMTCAIARAFPPTYEIMREDFNTTVETLRDAFLNANDLAGTFTAEALVLAQEMIDMSGQSDLQAKRLAEMTGSAASLLDRLAKTVDQAGQAAAAAEQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVAFQTNLLALNAGVEAARAGQ 831 LAI+ST+ RV VL+WACA+T++ A P P + +L G+H +VV+EG VLA+A++QR + ++E+ A RLETE RMAADAQAE+ AA + EVI +R AL L+ RDMTC I FP YE++R DFN T++ LR AF DL G F E+ L++ + +S +++ QA+ L+EMT + A L++ L +T QA AA++A+ AR+SA R VT +A+ AMR IEDSSRQI++IVDLIDDV+FQTNLLALNAGVEAARAG+ Sbjct: 100 LAIVSTIGRVSVLVWACAVTALHHLALTLVLPVLVYPSVDLWVNILRTGVHGAIVVIEGAVLAIAMVQRNEVMTEVERTAARLETETRMAADAQAESAAAQARADEVIARMRAALGALAQRDMTCRIDDPFPAQYEVLRRDFNLTMDNLRTAFRGVRDLTGAFLTESAELSRAVGGLSDRTEAQAQSLSEMTRTTADLVEALGQTATQARDAASSADDARSSAVRGGQVTERAIAAMRKIEDSSRQIAQIVDLIDDVSFQTNLLALNAGVEAARAGE 376
BLAST of mRNA_C-australica_Contig_10169.1.1 vs. uniprot
Match: A3K668_9RHOB (Methyl-accepting chemotaxis sensory transducer n=1 Tax=Sagittula stellata E-37 TaxID=388399 RepID=A3K668_9RHOB) HSP 1 Score: 205 bits (521), Expect = 5.470e-59 Identity = 125/277 (45.13%), Postives = 177/277 (63.90%), Query Frame = 1 Query: 1 LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGLHMVLVVLEGGVLAVAILQRRKAHEQIEQAAIRLETERRMAADAQAEAEAAHRVSQEVIHEVRIALSRLSGRDMTCAIARAFPPTYEIMREDFNTTVETLRDAFLNANDLAGTFTAEALVLAQEMIDMSGQSDLQAKRLAEMTGSAASLLDRLAKTVDQAGQAAAAAEQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVAFQTNLLALNAGVEAARAGQ 831 LA+++ R+ VLI+AC +T+V FA P P + + LH +V LEG VL +A+ R ++ + LE RMA DA+ + +AAH+ + VI E+RI LSRL+GRD+ I FP YEI+R +FN TV LRDAF NA+ + F+ ++ L+Q M +++ +++Q++ L+EMT + +L+D L+KT +QA AA ++ +AR SA VT A+ AMR IE+SSRQI IVDLIDDV+FQTNLLALNAGVEAARAG+ Sbjct: 100 LAVVAIPGRIDVLIYACIITAVHHFAFTVALPALVYPTGDLMTNVARTALHAAIVALEGVVLGLAVHDRSATLARVHNKSRALEVGTRMAEDARLDVQAAHQSASRVIEEMRIGLSRLAGRDLCFGIRDPFPAQYEILRSEFNVTVSILRDAFANASAVVDGFSTDSQGLSQTMNELAALAEVQSRALSEMTAATETLVDALSKTAEQARDAAQSSGEARDSAVDGTEVTAAAIAAMRAIEESSRQIGTIVDLIDDVSFQTNLLALNAGVEAARAGE 376
BLAST of mRNA_C-australica_Contig_10169.1.1 vs. uniprot
Match: A0A0W7WM04_9RHOB (Uncharacterized protein n=2 Tax=Ponticoccus marisrubri TaxID=1685382 RepID=A0A0W7WM04_9RHOB) HSP 1 Score: 198 bits (503), Expect = 3.020e-56 Identity = 126/276 (45.65%), Postives = 170/276 (61.59%), Query Frame = 1 Query: 1 LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGLHMVLVVLEGGVLAVAILQRRKAHEQIEQAAIRLETERRMAADAQAEAEAAHRVSQEVIHEVRIALSRLSGRDMTCAIARAFPPTYEIMREDFNTTVETLRDAFLNANDLAGTFTAEALVLAQEMIDMSGQSDLQAKRLAEMTGSAASLLDRLAKTVDQAGQAAAAAEQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVAFQTNLLALNAGVEAARAG 828 LAI S V ++ WACA+T++ P P E L LH ++VV+EGGVLAVAI QR ++I +A R+ETER+MAADAQ+EAE++ ++ VI + R AL+RL+ RD+TCA+ P YEI+R DFN V TLR AF A+D+A +F+ +A LA M +S ++ Q RL+ + + +LL+ + T QA AA +A + AM+ IE SSR+IS+IVDLIDDV+FQTNLLALNAGVEAARAG Sbjct: 113 LAIASASGHVGLVAWACALTALHHLGLTLALPALVYPSAELMQNLERTALHGIIVVIEGGVLAVAIAQRNAMTDEIARARDRMETERQMAADAQSEAESSREQARRVIADFRSALARLAARDLTCAMQDPLPAQYEILRTDFNEAVATLRAAFAKADDVADSFSDDAQALAGSMSALSTEAGEQVGRLSNINDTTGALLEMVQDTARQATSAAQSAGXXXXXXXXXXXXXXXXIRAMQAIEHSSREISKIVDLIDDVSFQTNLLALNAGVEAARAG 388
BLAST of mRNA_C-australica_Contig_10169.1.1 vs. uniprot
Match: A0A2K8WGX4_9RHOB (Chemotaxis protein n=2 Tax=Sagittula sp. P11 TaxID=2009329 RepID=A0A2K8WGX4_9RHOB) HSP 1 Score: 192 bits (488), Expect = 5.240e-54 Identity = 122/277 (44.04%), Postives = 167/277 (60.29%), Query Frame = 1 Query: 1 LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGLHMVLVVLEGGVLAVAILQRRKAHEQIEQAAIRLETERRMAADAQAEAEAAHRVSQEVIHEVRIALSRLSGRDMTCAIARAFPPTYEIMREDFNTTVETLRDAFLNANDLAGTFTAEALVLAQEMIDMSGQSDLQAKRLAEMTGSAASLLDRLAKTVDQAGQAAAAAEQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVAFQTNLLALNAGVEAARAGQ 831 LA+I+ R+ VLI+ACA+T++ P P E L LH +VVLEG VL +A R + QI + + LE +MA DA+ E +AAH+ + VI E+RIALSRL+GRD+ I FP YE++R +FN TV TLR+AF +A+D+ G F+ ++ L+ M D++ S++Q++ LAEMT + +L+D L +Q VT A+ AMR IE+ SRQI IVDLIDDV+FQTNLLALNAGVEAARAG+ Sbjct: 113 LAVIAIPGRIDVLIYACAITALHHLLLTVALPALVYPTAELTTNLARTALHGGIVVLEGVVLGLAARDRNASLAQIRRKSRELEIGTQMAEDARLEVQAAHQAASRVIEEMRIALSRLAGRDLCFGIQGPFPAQYEVLRSEFNMTVGTLREAFASASDVVGGFSTDSQSLSHTMNDLAALSEVQSRALAEMTAATETLVDVLXXXXEQXXXXXXXXXXXXXXXXXXXXVTAAAIAAMRAIEEGSRQIESIVDLIDDVSFQTNLLALNAGVEAARAGE 389
BLAST of mRNA_C-australica_Contig_10169.1.1 vs. uniprot
Match: A0A238K6F3_9RHOB (Aerotaxis receptor n=2 Tax=Pelagimonas varians TaxID=696760 RepID=A0A238K6F3_9RHOB) HSP 1 Score: 181 bits (460), Expect = 1.330e-49 Identity = 117/277 (42.24%), Postives = 162/277 (58.48%), Query Frame = 1 Query: 1 LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGLHMVLVVLEGGVLAVAILQRRKAHEQIEQAAIRLETERRMAADAQAEAEAAHRVSQEVIHEVRIALSRLSGRDMTCAIARAFPPTYEIMREDFNTTVETLRDAFLNANDLAGTFTAEALVLAQEMIDMSGQSDLQAKRLAEMTGSAASLLDRLAKTVDQAGQAAAAAEQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVAFQTNLLALNAGVEAARAGQ 831 LA++ST+ R+ VL WA ++T A P+ P L G H +V++E +LA+AI QR +IE + LE E R+ ADA +A+ AH ++ VI +R L++L+GR++TC I FP Y+++REDFN VETLR+AF A+ +A +A+ L + + MS +D QA L +M +A L LAKT +QA AA +A M+ IE SSR+IS+IVDLIDDV+FQTNLLALNAGVEAARAG+ Sbjct: 167 LALVSTMGRIPVLFWASSLTIAHQMVLATVAPSLLFPSAGLVENLTRSGFHSGVVLIEAFILAIAIAQRTADARKIEIKSKELEAETRLTADAHKDAQEAHEKARSVIAALRNTLTQLAGRNLTCHIQDGFPEEYDVLREDFNIAVETLREAFSRADGVADELALDAMQLVKAVHSMSQLTDAQAGSLTDMNTTATELKAALAKTAEQASHAAMSAGXXXXXXXXXXXXXXXXXXXMQMIESSSREISQIVDLIDDVSFQTNLLALNAGVEAARAGE 443
BLAST of mRNA_C-australica_Contig_10169.1.1 vs. uniprot
Match: A0A238W2A2_9RHOB (Methyl-accepting chemotaxis sensory transducer n=1 Tax=Puniceibacterium sediminis TaxID=1608407 RepID=A0A238W2A2_9RHOB) HSP 1 Score: 177 bits (450), Expect = 1.250e-48 Identity = 120/277 (43.32%), Postives = 164/277 (59.21%), Query Frame = 1 Query: 1 LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGLHMVLVVLEGGVLAVAILQRRKAHEQIEQAAIRLETERRMAADAQAEAEAAHRVSQEVIHEVRIALSRLSGRDMTCAIARAFPPTYEIMREDFNTTVETLRDAFLNANDLAGTFTAEALVLAQEMIDMSGQSDLQAKRLAEMTGSAASLLDRLAKTVDQAGQAAAAAEQARTSAERIDAVTTQAVTAMRGIEDSSRQISRIVDLIDDVAFQTNLLALNAGVEAARAGQ 831 LA++ST VLI ACA+T+V + P+ P + L LH +LVVLEGGVL + ILQR K ++ A L+ AA+AQ AE A ++ V+ RI+L RL+ ++ CA+ +FP +YE +R DFN +E LRD NA + F AEA L+ D+S +++ QA L+ G+ L L++T D A AA A AR SAE VT QA+ AM+ IE SSR+I +++ LIDD++FQTNLLALNAGVEAARAG+ Sbjct: 99 LAVVSTRSHAGVLILACAVTAVHHLLLSILLPSLIYPSFDIVENLQRTVLHGLLVVLEGGVLTMTILQRTKLSRDMKSQAEDLQDSSHAAAEAQKRAERAQSEAEGVVSAFRISLQRLADCNLDCALTDSFPESYEELRADFNGAIEMLRDTLQNAAATSHDFDAEARELSAATSDLSTRTERQAGALSGAAGAMQHLNASLSETADGARNAAEMAAAARESAETGTEVTLQAIEAMKLIETSSREILKVIQLIDDISFQTNLLALNAGVEAARAGE 375 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10169.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10169.1.1 >prot_C-australica_Contig_10169.1.1 ID=prot_C-australica_Contig_10169.1.1|Name=mRNA_C-australica_Contig_10169.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=277bp LAIISTLRRVRVLIWACAMTSVFLFAAAFYWPTPGLPMTESGAALLHGGLback to top mRNA from alignment at C-australica_Contig_10169:3..833+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10169.1.1 ID=mRNA_C-australica_Contig_10169.1.1|Name=mRNA_C-australica_Contig_10169.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=831bp|location=Sequence derived from alignment at C-australica_Contig_10169:3..833+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10169:3..833+ >mRNA_C-australica_Contig_10169.1.1 ID=mRNA_C-australica_Contig_10169.1.1|Name=mRNA_C-australica_Contig_10169.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=831bp|location=Sequence derived from alignment at C-australica_Contig_10169:3..833+ (Chrysoparadoxa australica CS_1217)back to top |