mRNA_C-australica_Contig_1016.2.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1016.2.1 vs. uniprot
Match: A0A6U1QLD2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QLD2_9STRA) HSP 1 Score: 221 bits (562), Expect = 4.170e-66 Identity = 119/230 (51.74%), Postives = 160/230 (69.57%), Query Frame = 3 Query: 90 FVAGATGRTGQRVVNELVAVGAEVVAGVRDEQKAA-------------GMLGSASVKAVDWTNKEAIKSAMEGCDAVVCTLGASESEALDFRGPARVDGQMTQDLIAAAKELG-TIKHFTLVTSLGTAKFGMPASILNLFWGILTFKRKSELALVDSGLPYTIVRPGGMEKPEDDYDMAYDVVLRPADSTFGGLVSRKQVAKVVAAAVTNTELSANKVIEVITEEVASPK 737 FVAGA+GRTGQRVV EL+ GA+V AG+R+ A G+ S + +D N+ I A++ CDAVV LGA E+EALD+ P RVDG +TQ+LI A+ E +KHF +V+SLGT K G PAS+LNLFWG+LT+KR+SE L SG+PYTIVRPGGME+P+DD+++ +++ L+ AD+TFGG VSR QVAK+V+A + + +ANK+IEV+ E A K Sbjct: 63 FVAGASGRTGQRVVRELLQSGAKVKAGIRESSNAKAKEIFFNAEFMDQGLTDSLELYPIDLENQSQISEALKDCDAVVSALGALETEALDWTAPYRVDGTLTQNLIKASMEQKEAVKHFIMVSSLGTGKIGFPASVLNLFWGVLTWKRQSEKLLESSGIPYTIVRPGGMERPKDDFELTHNIKLQAADTTFGGNVSRLQVAKLVSAILQQPDTTANKIIEVVAETQAPKK 292
BLAST of mRNA_C-australica_Contig_1016.2.1 vs. uniprot
Match: A0A250X437_9CHLO (NAD(P)-bd_dom domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X437_9CHLO) HSP 1 Score: 214 bits (544), Expect = 4.480e-64 Identity = 118/237 (49.79%), Postives = 157/237 (66.24%), Query Frame = 3 Query: 90 FVAGATGRTGQRVVNELVAVGAEVVAGVRDEQKAAGML--------------GSASVKAVDWTNKEAIKSAMEGCDAVVCTLGASESEALDFRGPARVDGQMTQDLIAAAKELGTIKHFTLVTSLGTAKFGMPASILNLFWGILTFKRKSELALVDSGLPYTIVRPGGMEKPEDDYDMAYDVVLRPADSTFGGLVSRKQVAKVVAAAVTNTELSANKVIEVITEEVASPKVLLHPSM 758 FVAG+TGR G+R+ EL+ G V AG R+ KA G + G V A D + E+IK A+ G VVC +GA E + LD GP R+DG+ T +LI A E +++HF LVTSLGT KFG+PA +LNLFWG+LT+KRK+E AL SG+PYTI+RPGGME+P+DDY ++++ + D+ FGG VSR QVA++VAAA+ L+ANKV+EV+ E A PK L PS+ Sbjct: 89 FVAGSTGRLGERICRELLRSGVRVRAGARNVDKARGNIKHWVASGSLRPSDAGRIEVVAFDLEDSESIKQALNGASRVVCAVGAPEDQVLDSTGPRRIDGEGTINLILTAAEARSVEHFVLVTSLGTGKFGLPAGLLNLFWGVLTWKRKAEEALEMSGMPYTIIRPGGMERPKDDYKNTHNLIFKEKDTAFGGQVSRLQVAELVAAAIQYPTLAANKVLEVVAETTA-PK-LPFPSL 323
BLAST of mRNA_C-australica_Contig_1016.2.1 vs. uniprot
Match: A0A6H5KIF4_9PHAE (MsrB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIF4_9PHAE) HSP 1 Score: 214 bits (544), Expect = 3.570e-63 Identity = 121/231 (52.38%), Postives = 158/231 (68.40%), Query Frame = 3 Query: 90 FVAGATGRTGQRVVNELVAVGAEVVAGVRDEQ----------KA---AGMLGSASVKAVDWTNKEAIKSAMEGCDAVVCTLGASESEALDFRGPARVDGQMTQDLIAAAKELGTIKHFTLVTSLGTAKFGMPASILNLFWGILTFKRKSELALVDSGLPYTIVR--PGGMEKPEDDYDMAYDVVLRPADSTFGGLVSRKQVAKVVAAAVTNTELSANKVIEVITEEVASPK 737 FVAGATGR G+RVV EL+ G EV A VR + KA G+ V VD ++ + AME +VVC LGASESE + +GP +VDG+++Q L+ AAKE ++KHF LVT+LGT KFG PAS LNLFWGIL++KRK+E AL+DSG+PYTI+R PGGMEKP DD++ ++V + D+ FGG+VSR QVAK+ AAAV + S NKV+EV+ E++A K Sbjct: 101 FVAGATGRLGKRVVRELLLDGMEVTAAVRPDSLPKANTLFADKAFMPEGLSSKLEVVGVDPESEFELSKAMEKSQSVVCALGASESEPFNVKGPYQVDGKLSQKLVLAAKETPSVKHFILVTALGTGKFGWPASALNLFWGILSWKRKTEKALIDSGIPYTIIRRAPGGMEKPGDDFEQTHNVRVASKDTLFGGVVSRLQVAKLAAAAVVAPDSSTNKVMEVVAEDLAPKK 331
BLAST of mRNA_C-australica_Contig_1016.2.1 vs. uniprot
Match: E1Z393_CHLVA (NAD(P)-bd_dom domain-containing protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z393_CHLVA) HSP 1 Score: 193 bits (490), Expect = 5.430e-58 Identity = 117/224 (52.23%), Postives = 140/224 (62.50%), Query Frame = 3 Query: 78 NPKTFVAGATGRTGQRVVNELVAVGAEVVAGVRDEQKAAGMLGSASVKAVDWTNKEAI-------KSAMEGCDAVVCTLGASESEALDFRGPARVDGQMTQDLIAAAKELGTIKHFTLVTSLGTAKFGMPASILNLFWGILTFKRKSELALVDSGLPYTIVRPGGMEKPEDDYDMAYDVVLRPADSTFGGLVSRKQVAKVVAAAVTNTELSANKVIEVITEEVA 728 P FVAGATGR G R+V EL+ G +V AGVR +KA L AS + +KE + AM G VVC +GASESE D P R+DG L+ AA G + F LVTSLGT K G PA +LNLF G+L FKRK+E AL SGLPY IVRPGGME+P DDY + ++V L D FGG VSR QVA++VAAAV N EL+ NKV+EV+ E A Sbjct: 1 TPTVFVAGATGRLGARIVRELLGQGFKVRAGVRSAEKAENFLSIAS--SYGLLSKEELGRLQVRRSPAMYGAH-VVCAVGASESELGDLSAPRRIDGDGATRLVQAATTAG-VDQFVLVTSLGTGKIGFPAGVLNLFGGVLVFKRKAEEALEASGLPYVIVRPGGMERPRDDYKLTHNVKLATRDKLFGGQVSRLQVAELVAAAVANPELAENKVLEVVAETAA 220
BLAST of mRNA_C-australica_Contig_1016.2.1 vs. uniprot
Match: A0A7I4A1T1_PHYPA (NAD(P)-bd_dom domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4A1T1_PHYPA) HSP 1 Score: 194 bits (493), Expect = 3.020e-57 Identity = 111/227 (48.90%), Postives = 145/227 (63.88%), Query Frame = 3 Query: 78 NPKTFVAGATGRTGQRVVNELVAVGAEVVAGVRDEQKAAGMLGSASVKAVDWTNK----------EAIKSAMEGCDAVVCTLGASESEALDFRGPARVDGQMTQDLIAAAKELGTIKHFTLVTSLGTAKFGMPASILNLFWGILTFKRKSELALVDSGLPYTIVRPGGMEKPEDDYDMAYDVVLRPADSTFGGLVSRKQVAKVVAAAVTNTELSANKVIEVITEEVA 728 N FVAGATG+ G R V EL+ G +V AGVRD + G A +KA D + +AI+S + VVCT+GASE E D GP R+D + T++LI AA + HF LV+SLGT KFG PASILNLFWG+L +K K+E AL +SGL YTIVRPGGME+P D Y ++++L P D+ GG VS Q+A+++AA V+N +L+ NKV+E I E A Sbjct: 88 NNVVFVAGATGKVGSRTVRELLKSGVQVRAGVRDVSR-----GQAVLKATDKSESLEFVKCDLENDAIESCLGDAGVVVCTIGASEKEISDVTGPYRIDYKATENLIKAATS-AKVNHFILVSSLGTTKFGWPASILNLFWGVLIWKAKAEKALEESGLSYTIVRPGGMERPTDAYKETHNLILAPKDTYSGGQVSSLQIAELIAACVSNLDLAGNKVLEAIAETTA 308
BLAST of mRNA_C-australica_Contig_1016.2.1 vs. uniprot
Match: D7G4L2_ECTSI (MsrB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4L2_ECTSI) HSP 1 Score: 194 bits (493), Expect = 9.100e-57 Identity = 98/181 (54.14%), Postives = 133/181 (73.48%), Query Frame = 3 Query: 195 GMLGSASVKAVDWTNKEAIKSAMEGCDAVVCTLGASESEALDFRGPARVDGQMTQDLIAAAKELGTIKHFTLVTSLGTAKFGMPASILNLFWGILTFKRKSELALVDSGLPYTIVRPGGMEKPEDDYDMAYDVVLRPADSTFGGLVSRKQVAKVVAAAVTNTELSANKVIEVITEEVASPK 737 G+ V VD ++ + AM+ +VVC LGASESE + +GP +VDG+++Q L+ AAKE ++KHF LVT+LGT KFG PAS LNLFWGIL++KRK+E AL+DSG+PYTI+RPGGMEKP DD++ ++V + D+ FGG+VSR QVAK+ AAAV + S NKV+EV+ E++A K Sbjct: 40 GLSSKLEVVGVDPESEFELSKAMDKSQSVVCALGASESEPFNVKGPYQVDGKLSQKLVLAAKETPSVKHFVLVTALGTGKFGWPASALNLFWGILSWKRKTEKALIDSGIPYTILRPGGMEKPGDDFEQTHNVRVASKDTLFGGVVSRLQVAKLAAAAVVAPDSSTNKVMEVVAEDLAPKK 220
BLAST of mRNA_C-australica_Contig_1016.2.1 vs. uniprot
Match: D8RQE1_SELML (NAD(P)-bd_dom domain-containing protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RQE1_SELML) HSP 1 Score: 193 bits (490), Expect = 1.250e-56 Identity = 111/231 (48.05%), Postives = 143/231 (61.90%), Query Frame = 3 Query: 90 FVAGATGRTGQRVVNELVAVGAEVVAGVRDEQKAAGMLGSA------------------SVKAVDWTNKEAIKSAMEGCDAVVCTLGASESEALDFRGPARVDGQMTQDLIAAAKELGTIKHFTLVTSLGTAKFGMPASILNLFWGILTFKRKSELALVDSGLPYTIVRPGGMEKPEDDYDMAYDVVLRPADSTFGGLVSRKQVAKVVAAAVTNTELSANKVIEVITEEVA 728 FVAGATG G R V ELV G V AGVR KA +LG + + D + I+SA+ V+C +GASE E LD GP R+D + T++LIAAAK +KHF LVTSLGT KFG+PAS+LNLFWG+L +K K+E AL+DSGL YTIVRPGGME+P D + +++ L P D+ GG VSR QVA+++A N EL+ +K++E I E A Sbjct: 59 FVAGATGNVGSRTVKELVKSGLRVRAGVRSIDKAESILGVSISYHVCRNEKNYIKDDQLEIIDCDLEKPDEIESALGNSGVVICAIGASEKEVLDVTGPYRIDYEATKNLIAAAKN-AEVKHFILVTSLGTTKFGLPASVLNLFWGVLIWKAKAEKALIDSGLAYTIVRPGGMERPTDAFKETHNLRLAPKDTFTGGQVSRLQVAELLACIANNLELAEDKILEAIAETSA 288
BLAST of mRNA_C-australica_Contig_1016.2.1 vs. uniprot
Match: A0A072UX22_MEDTR (NAD-dependent epimerase/dehydratase family protein n=3 Tax=Medicago truncatula TaxID=3880 RepID=A0A072UX22_MEDTR) HSP 1 Score: 198 bits (503), Expect = 9.160e-56 Identity = 113/231 (48.92%), Postives = 145/231 (62.77%), Query Frame = 3 Query: 90 FVAGATGRTGQRVVNELVAVGAEVVAGVRDEQKAAGMLGSASVKAVDWTN------------------KEAIKSAMEGCDAVVCTLGASESEALDFRGPARVDGQMTQDLIAAAKELGTIKHFTLVTSLGTAKFGMPASILNLFWGILTFKRKSELALVDSGLPYTIVRPGGMEKPEDDYDMAYDVVLRPADSTFGGLVSRKQVAKVVAAAVTNTELSANKVIEVITEEVA 728 FVAGATG+ G R V EL+ +G +V AGVR Q+A ++ S +D T+ E IKSA+ V+CT+GASE E D GP R+D T++L+ AA + + HF LVTSLGT KFG PA+ILNLFWG+L +KRK+E AL+ SGLPYTIVRPGGME+P D Y ++V L D+ FGG VS QVA+++AA N ELS K++EVI E A Sbjct: 85 FVAGATGKVGSRTVRELIKLGFKVRAGVRSAQRAGSLVQSVKQLKLDGTSGGSEAVEKLEIVECDLEKPEQIKSALGNASTVICTIGASEKEIFDITGPYRIDYMATKNLVDAAS-VAKVNHFILVTSLGTNKFGFPAAILNLFWGVLCWKRKAEEALLASGLPYTIVRPGGMERPTDAYKETHNVTLSTEDTLFGGQVSNLQVAELMAAMAKNPELSYCKIVEVIAETTA 314
BLAST of mRNA_C-australica_Contig_1016.2.1 vs. uniprot
Match: A0A8B8LH06_ABRPR (protein TIC 62, chloroplastic isoform X2 n=2 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8LH06_ABRPR) HSP 1 Score: 194 bits (494), Expect = 2.920e-55 Identity = 112/246 (45.53%), Postives = 150/246 (60.98%), Query Frame = 3 Query: 69 EGLNPKT--------FVAGATGRTGQRVVNELVAVGAEVVAGVRDEQKAAGMLGSASVKAVDWTNK------------------EAIKSAMEGCDAVVCTLGASESEALDFRGPARVDGQMTQDLIAAAKELGTIKHFTLVTSLGTAKFGMPASILNLFWGILTFKRKSELALVDSGLPYTIVRPGGMEKPEDDYDMAYDVVLRPADSTFGGLVSRKQVAKVVAAAVTNTELSANKVIEVITEEVA 728 EG+ KT FVAGATGR G R V EL+ +G V AGVRD ++A ++ S +D T+ + I SA+ V+C++GASE E D GP R+D Q T++LI AA + + HF LVTSLGT K G PA+ILNLFWG+L +KRK+E AL+ SG+PYTIVRPGGME+P D + +++ L D+ FGGLVS Q+A+++A N ELS K++EVI E +A Sbjct: 74 EGIPEKTNSKDDNLVFVAGATGRVGSRTVRELIKLGFRVRAGVRDAERAGALVKSVEQLKLDGTSASGETVEKLEIVECDLEKPDQIVSALGNASTVICSIGASEKEVFDITGPFRIDYQATKNLIDAAT-VAKVNHFILVTSLGTNKIGFPAAILNLFWGVLIWKRKAEEALLASGIPYTIVRPGGMERPTDAFKETHNITLSTEDTLFGGLVSNLQIAELMAVMAKNRELSYCKIVEVIAETIA 318
BLAST of mRNA_C-australica_Contig_1016.2.1 vs. uniprot
Match: D8TIU4_VOLCA (NAD(P)-bd_dom domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TIU4_VOLCA) HSP 1 Score: 190 bits (482), Expect = 4.110e-55 Identity = 114/230 (49.57%), Postives = 146/230 (63.48%), Query Frame = 3 Query: 90 FVAGATGRTGQRVVNELVAVGAEVVAGVRDEQKAAGMLGSAS---------VKAV-----DWTNKEAIKSAMEGCDAVVCTLGASESEALDFRGPARVDGQMTQDLIAAAKELGTIKHFTLVTSLGTAKFGMPASILNLFWGILTFKRKSELALVDSGLPYTIVRPGGMEKPEDDYDMAYDVVLRPADSTFGGLVSRKQVAKVVAAAVTNTELSANKVIEVITEEVASPK 737 FVAGATGRTG RVV EL+ G V AG R+ + A L A+ VK V D N E +A+ + VVC +GA E +AL+F P +VDG+ + LI A ELG + F LVTSLGT K G PA +LNLF G+L +KR++E AL SG+ YTIVRPGGME+P DDY +++VL+P DSTFGG VSR QVA++VAA N + NKV+E++ E A P+ Sbjct: 98 FVAGATGRTGARVVRELLESGFTVRAGARNVEAAESALSVAASYGIIKADQVKRVTVVPFDVGNVEGFAAAIGNANKVVCAVGAPEDQALNFSAPKKVDGEGSVALINKAAELG-VTQFVLVTSLGTGKLGWPAGVLNLFGGVLLWKREAEKALEASGMAYTIVRPGGMERPTDDYKKTHNLVLKPRDSTFGGQVSRLQVAELVAATCRNPAAAENKVLELVAETTAPPR 326 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1016.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1016.2.1 >prot_C-australica_Contig_1016.2.1 ID=prot_C-australica_Contig_1016.2.1|Name=mRNA_C-australica_Contig_1016.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=250bp MRSIAVALLACLFYQCWLVEGLNPKTFVAGATGRTGQRVVNELVAVGAEVback to top mRNA from alignment at C-australica_Contig_1016:5756..7309- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1016.2.1 ID=mRNA_C-australica_Contig_1016.2.1|Name=mRNA_C-australica_Contig_1016.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1554bp|location=Sequence derived from alignment at C-australica_Contig_1016:5756..7309- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1016:5756..7309- >mRNA_C-australica_Contig_1016.2.1 ID=mRNA_C-australica_Contig_1016.2.1|Name=mRNA_C-australica_Contig_1016.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=750bp|location=Sequence derived from alignment at C-australica_Contig_1016:5756..7309- (Chrysoparadoxa australica CS_1217)back to top |