mRNA_C-australica_Contig_1015.2.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_1015.2.1 vs. uniprot
Match: D8LKP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP8_ECTSI) HSP 1 Score: 255 bits (652), Expect = 2.430e-67 Identity = 133/231 (57.58%), Postives = 156/231 (67.53%), Query Frame = 2 Query: 239 IGQPLGSPYVMQSNRAKQKKGTGRVTVKGSKKGSIAPKYTTHPNP----------SMPAMSGEIVISREEQAMLDAAWSKEMDEVLREGVLRYGVSWDMVAGHMRPADVTVKQCEARWQMVRNNPVKGPWATEEDELLRRLVAIHGSKKWSQIAQQFPGRSGKQCRERWLNHLDTRVKKSFWTEEEDRVLCEAQRRLGNKWSEISRLLPGRAENAVKNRFNSIITKRLSQE 901
+ PLGSP + Q+ RAKQKKG G G A + +P + I ++ E +L A W +EMDE+LREGVLRYG W+ V+ HM P + ++ E RWQMV+ NPVKGPW+ EED LL+ LV +G KKWS IA QFPGRSGKQCRERWLNHLDTRVKKS WT ED LCEAQ RLGNKWSEIS+LLPGRAENAVKNRFNSIITKRL+ +
Sbjct: 6 LKSPLGSPAMQQTVRAKQKKGAGGEGTASGTGGKAAAERKAAARAWEANNKRRSIPLPPVGPGIEVTAAEAMILGARWDREMDEMLREGVLRYGADWEEVSTHMAPHECPKEEVEKRWQMVKANPVKGPWSPEEDSLLKVLVDEYGRKKWSLIATQFPGRSGKQCRERWLNHLDTRVKKSAWTGAEDMKLCEAQGRLGNKWSEISKLLPGRAENAVKNRFNSIITKRLASQ 236
BLAST of mRNA_C-australica_Contig_1015.2.1 vs. uniprot
Match: A0A835Z962_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z962_9STRA) HSP 1 Score: 212 bits (539), Expect = 3.180e-60 Identity = 102/161 (63.35%), Postives = 126/161 (78.26%), Query Frame = 2 Query: 425 MLDAAWSKEMDEVLREGVLRYGVS-WDMVAGHMRPA-----DVTVKQCEARWQMVRNNPVKGPWATEEDELLRRLVAIHGSKKWSQIAQQFPGRSGKQCRERWLNHLDTRVKKSFWTEEEDRVLCEAQRRLGNKWSEISRLLPGRAENAVKNRFNSIITKR 889
ML+A W+K+MD+ LREGVLRYG+S W V HM+ DV +C RWQ++ + PVKGPWA+EED++LR LV +G+KKWS +A PGR+GKQCRERWLNHLD RV K+ WT EED +L +AQR LGN+WS+ISR+LPGRAENAVKNRFNS+ITKR
Sbjct: 1 MLNAKWTKDMDDTLREGVLRYGMSEWPKVMAHMQVQSHVLEDVESLECHQRWQIICDLPVKGPWASEEDDVLRALVKQYGNKKWSHVATGLPGRTGKQCRERWLNHLDIRVMKTSWTPEEDELLFDAQRELGNQWSKISRMLPGRAENAVKNRFNSLITKR 161
BLAST of mRNA_C-australica_Contig_1015.2.1 vs. uniprot
Match: F0YHL4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHL4_AURAN) HSP 1 Score: 201 bits (510), Expect = 1.880e-56 Identity = 102/159 (64.15%), Postives = 121/159 (76.10%), Query Frame = 2 Query: 440 WSKEMDEVLREGVLRYGVS-WDMVAGHMRPA------DVTVKQCEARWQ-MVRNNPVKGPWATEEDELLRRLVAIHGSKKWSQIAQQFPGRSGKQCRERWLNHLDTRVKKSFWTEEEDRVLCEAQRRLGNKWSEISRLLPGRAENAVKNRFNSIITKRL 892
W++E D VLREGVLR+G S W+ V+ H+ P +CEARW+ +VR+ VKGPW EED LLR+LV G K+W+ IA PGR+GKQCRERWLNHLDTRV KS WT +ED VL EAQ+R+GNKWSEI+RLLPGRAENAVKNRFNS+ITKRL
Sbjct: 1 WTEEEDAVLREGVLRFGTSAWEDVSRHLLPPVQGGPQKRQAPECEARWEAVVRHTAVKGPWLPEEDSLLRQLVNKFGPKRWALIASHIPGRAGKQCRERWLNHLDTRVIKSDWTPDEDAVLLEAQQRVGNKWSEIARLLPGRAENAVKNRFNSLITKRL 159
BLAST of mRNA_C-australica_Contig_1015.2.1 vs. uniprot
Match: A0A7S2WV82_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV82_9STRA) HSP 1 Score: 218 bits (555), Expect = 7.260e-56 Identity = 103/155 (66.45%), Postives = 128/155 (82.58%), Query Frame = 2 Query: 437 AWSKEMDEVLREGVLRYGVS-WDMVAGHMRPA-DVTVKQCEARWQMVRNNPVKGPWATEEDELLRRLVAIHGSKKWSQIAQQFPGRSGKQCRERWLNHLDTRVKKSFWTEEEDRVLCEAQRRLGNKWSEISRLLPGRAENAVKNRFNSIITKRLS 895
AW +E D VLRE VLR+GVS W V+ HM P+ + QCE RW++V+NNPVKGPW EED+LLR LV G K+WS+IA++ PGR+GKQCRERWLNHLD+ VKKS WT EED++L EAQRR+GN+WSEI+R+LPGRAENAVKNR+NS+ITK+L+
Sbjct: 136 AWGEEEDAVLREAVLRFGVSNWPAVSSHMLPSCHRSADQCEIRWRVVKNNPVKGPWLPEEDQLLRDLVGQFGPKQWSKIAEKIPGRAGKQCRERWLNHLDSSVKKSDWTPEEDKILLEAQRRVGNRWSEIARMLPGRAENAVKNRYNSLITKKLT 290
BLAST of mRNA_C-australica_Contig_1015.2.1 vs. uniprot
Match: W7TQR3_9STRA (Myb-related protein a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQR3_9STRA) HSP 1 Score: 199 bits (505), Expect = 3.410e-50 Identity = 93/159 (58.49%), Postives = 116/159 (72.96%), Query Frame = 2 Query: 440 WSKEMDEVLREGVLRYGVS-WDMVAGHMRPADVTVKQCEARWQMVRNNPVKGPWATEEDELLRRLVAIHGS--KKWSQIAQQFPGRSGKQCRERWLNHLDTRVKKSFWTEEEDRVLCEAQRRLGNKWSEISRLLPGRAENAVKNRFNSIITKRLSQEHG 907
W+ E D++LRE +LR G W + HM P + +C RW +++ PVKGPW+ EED LL+ LV +G KKWS +AQ PGR+GKQCRERWLNHLD VKK W E ED +LC+AQRRLGNKWSEI++LLPGRAEN+VKNRFNS+IT+R S +G
Sbjct: 149 WTSEQDDLLREAILRNGTDKWAAITEHMLPFSFSSDECAVRWDEIKDVPVKGPWSVEEDALLQLLVGRYGPRPKKWSMLAQHIPGRAGKQCRERWLNHLDRSVKKGEWEEGEDAILCDAQRRLGNKWSEIAKLLPGRAENSVKNRFNSLITRRNSHRYG 307
BLAST of mRNA_C-australica_Contig_1015.2.1 vs. uniprot
Match: A0A8J2SUI4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SUI4_9STRA) HSP 1 Score: 194 bits (494), Expect = 2.940e-49 Identity = 99/160 (61.88%), Postives = 118/160 (73.75%), Query Frame = 2 Query: 440 WSKEMDEVLREGVLRYGVS-WDMVAGHMRPA------DVTVKQCEARWQM-VRNNPVKGPWATEEDELLRRLVAIHGSKKWSQIAQQFPGRSGKQCRERWLNHLDTRVKKSFWTEEEDRVLCEAQRRLGNKWSEISRLLPGRAENAVKNRFNSIITKRLS 895
W++E D VLREGVLR+G W VA H+ P T C+ARW VR+ VKGPW EED LLR+LVA G K+W+ IA PGR+GKQCRERWLNHLD+RV KS WT +ED +L +AQ+R+GNKWSEI+R LPGRAENAVKNRFNS+ITKRL+
Sbjct: 60 WTEEEDAVLREGVLRFGTGDWSKVARHLLPPINGGPQKRTPDDCQARWDAAVRHAAVKGPWLPEEDNLLRQLVAKFGPKRWALIASHIPGRAGKQCRERWLNHLDSRVVKSDWTPDEDAILLDAQQRVGNKWSEIARGLPGRAENAVKNRFNSLITKRLT 219
BLAST of mRNA_C-australica_Contig_1015.2.1 vs. uniprot
Match: D7FZ02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ02_ECTSI) HSP 1 Score: 186 bits (473), Expect = 3.860e-47 Identity = 89/161 (55.28%), Postives = 119/161 (73.91%), Query Frame = 2 Query: 440 WSKEMDEVLREGVLRYG--VSWDMVAGHMR--PADVTVKQCEARWQMVRNNPVKGPWATEEDELLRRLVAIHGSKKWSQIAQQFPGRSGKQCRERWLNHLDTRVKKSFWTEEEDRVLCEAQRRLGNKWSEISRLLPGRAENAVKNRFNSIITKRLSQEHGN 910
WS++ D VLR+ VLR ++W+ +A + VT +C RW V+ PVKGPW++EED+ L+RLV GSKKW+ +A+ FPGRSGKQCRERW NH+D RVKK W+ EED++LCEAQR+LGNKWSE+S++L GR+ENA+KNRFNS+ K L++ N
Sbjct: 12 WSRDTDLVLRDLVLRSSEEINWNQIATAIEWDSGAVTPSECRERWNYVKETPVKGPWSSEEDDHLKRLVDEFGSKKWNLLARAFPGRSGKQCRERWHNHVDGRVKKGEWSAEEDQILCEAQRQLGNKWSEMSKILVGRSENAIKNRFNSLNAKGLAEMRAN 172
BLAST of mRNA_C-australica_Contig_1015.2.1 vs. uniprot
Match: D8MAX1_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8MAX1_BLAHO) HSP 1 Score: 185 bits (469), Expect = 1.430e-46 Identity = 88/151 (58.28%), Postives = 111/151 (73.51%), Query Frame = 2 Query: 440 WSKEMDEVLREGVLRYGVS-WDMVAGHMRPADVTVKQCEARW-QMVRNNPVKGPWATEEDELLRRLVAIHGSKKWSQIAQQFPGRSGKQCRERWLNHLDTRVKKSFWTEEEDRVLCEAQRRLGNKWSEISRLLPGRAENAVKNRFNSIITK 886
W++E+DE++RE V RYG + W V +R +T +QC+ RW Q++R+ VKGPW+ EED+LLR LV HG KKWS IA GR GKQCRERWLNHL V K WTEEED +L AQ ++GNKWS IS+LLPGR+ENAVKNR+NSI ++
Sbjct: 12 WTRELDEMIREAVARYGSNDWSKVCQKLRTQQITPEQCQMRWEQVLRDQTVKGPWSEEEDKLLRSLVEKHGPKKWSTIASHINGRIGKQCRERWLNHLSPDVSKDVWTEEEDEILINAQFQMGNKWSFISKLLPGRSENAVKNRYNSIASR 162
BLAST of mRNA_C-australica_Contig_1015.2.1 vs. uniprot
Match: K8YTL3_NANGC (V-myb myeloblastosis viral oncogene-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YTL3_NANGC) HSP 1 Score: 187 bits (474), Expect = 7.410e-46 Identity = 88/152 (57.89%), Postives = 110/152 (72.37%), Query Frame = 2 Query: 461 VLREGVLRYGVS-WDMVAGHMRPADVTVKQCEARWQMVRNNPVKGPWATEEDELLRRLVAIHGS--KKWSQIAQQFPGRSGKQCRERWLNHLDTRVKKSFWTEEEDRVLCEAQRRLGNKWSEISRLLPGRAENAVKNRFNSIITKRLSQEHG 907
+ E +LR G W + HM P + +C RW +++ PVKGPW+ EED LL++LV +G KKWS +AQ PGR+GKQCRERWLNHLD VKK W E ED +LC+AQRRLGNKWSEI++LLPGRAEN+VKNRFNS+IT+R S +G
Sbjct: 27 ICSEAILRNGTDKWAAITEHMLPFSFSSDECAVRWDEIKDVPVKGPWSVEEDALLQQLVGRYGPRPKKWSMLAQHIPGRAGKQCRERWLNHLDRSVKKGEWEEGEDAILCDAQRRLGNKWSEIAKLLPGRAENSVKNRFNSLITRRNSHRYG 178
BLAST of mRNA_C-australica_Contig_1015.2.1 vs. uniprot
Match: A0A196SGZ8_BLAHN (Transcriptional activator Myb n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SGZ8_BLAHN) HSP 1 Score: 177 bits (450), Expect = 3.730e-44 Identity = 88/161 (54.66%), Postives = 114/161 (70.81%), Query Frame = 2 Query: 413 EEQAMLDAA-WSKEMDEVLREGVLRYGVS-WDMVAGHMRPADVTVKQCEARWQMV-RNNPVKGPWATEEDELLRRLVAIHGSKKWSQIAQQFPGRSGKQCRERWLNHLDTRVKKSFWTEEEDRVLCEAQRRLGNKWSEISRLLPGRAENAVKNRFNSIITK 886
++Q D++ W++E+DE++RE V RYG + W V +R +T +QC+ RW+ V R+ VKGPW+ EED +LR LV G KKWS IA GR GKQCRERWLNHL V K WTEEED +L AQ ++GNKWS IS+LLPGR+ENAVKNR+NSI ++
Sbjct: 2 QDQRQADSSLWTRELDEMIREAVARYGSNDWVKVCQKLRNQHITPEQCQERWETVLRDQTVKGPWSEEEDAILRSLVEKFGPKKWSTIASYINGRIGKQCRERWLNHLSPTVTKDVWTEEEDEILINAQIQMGNKWSYISKLLPGRSENAVKNRYNSIASR 162 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1015.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1015.2.1 >prot_C-australica_Contig_1015.2.1 ID=prot_C-australica_Contig_1015.2.1|Name=mRNA_C-australica_Contig_1015.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=726bp MKRDVGAIGQPLGSPYVMQSNRAKQKKGTGRVTVKGSKKGSIAPKYTTHPback to top mRNA from alignment at C-australica_Contig_1015:1812..7402- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1015.2.1 ID=mRNA_C-australica_Contig_1015.2.1|Name=mRNA_C-australica_Contig_1015.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=5591bp|location=Sequence derived from alignment at C-australica_Contig_1015:1812..7402- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1015:1812..7402- >mRNA_C-australica_Contig_1015.2.1 ID=mRNA_C-australica_Contig_1015.2.1|Name=mRNA_C-australica_Contig_1015.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=2178bp|location=Sequence derived from alignment at C-australica_Contig_1015:1812..7402- (Chrysoparadoxa australica CS_1217)back to top |