mRNA_C-australica_Contig_1014.4.2 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1014.4.2
Unique NamemRNA_C-australica_Contig_1014.4.2
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_1014.4.2 vs. uniprot
Match: A0A7S0N715_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N715_9CHLO)

HSP 1 Score: 135 bits (341), Expect = 6.090e-34
Identity = 82/211 (38.86%), Postives = 108/211 (51.18%), Query Frame = 3
Query:  267 LEIKDRTWKLKTYKQCFVSSEAVKWLVKTGFAVDEEAAVGMGQVMLEEGYIAHVSSGHDFINAYLFYRFLPNL-------------DAPSTHEEVAAPID----------------QSWDCEAL--------AAEMRQVIAVRDRTWRLMTFKSCWLGTDAVKWLISSGNAKDEKQAVEMGQAMLNRGLLYHVARNHGFRNIPLFYRFAVD 788
            +E+ DRT  L TY QCFV S+AV WLV+ G A   EAAV +G+ ML+E  I HV + HDF +A  FYRF P L              A S H   +A +D                 + D  AL        A  M   +A  D  +R  T++ C++G+DAV WL+ +G A  E+ A+ +G  ML  GL+YHV   H F N  LFYRF +D
Sbjct:    5 VEVADRTHHLNTYDQCFVGSDAVAWLVRAGEAESAEAAVALGRKMLKERIIYHVLNEHDFQDARFFYRFHPALRAEAEGGASTNEAGAESQHGASSASLDGKDLQDGEGKRSFQLATADDAGALSDAELVERAQRMAAGVAAGDHAYRFKTYEECFVGSDAVAWLVRAGEAASEEAAIALGNRMLKAGLMYHVLDEHNFENAHLFYRFHLD 215          
BLAST of mRNA_C-australica_Contig_1014.4.2 vs. uniprot
Match: X6M966_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6M966_RETFI)

HSP 1 Score: 118 bits (295), Expect = 3.370e-27
Identity = 61/182 (33.52%), Postives = 106/182 (58.24%), Query Frame = 3
Query:  243 LANEMKSELEIKDRTWKLKTYKQCFVSSEAVKWLVKTGFAVDEEAAVGMGQVMLEEGYIAHVSSGHDFINAYLFYRFLPNLDAPSTHEEVAAPIDQSWDCEALAAEMRQVIAVRDRTWRLMTFKSCWLGTDAVKWLISSGNAKDEKQAVEMGQAMLNRGLLYHVARNHGFRNIPLFYRFAVD 788
            +A ++   +EIKDRT+  KTYKQCF+ ++ V++ V +G   + + AV +G ++++E YI HV   HDF N  LFY +   +   +++    + I Q  +  +++ E  + IA     W L T+  C++G + VKWL+ +G AK    AV +G  ++ + L++HV   H F+N  LFY+ + +
Sbjct:   14 IALQIAKHVEIKDRTYHFKTYKQCFLGTDVVRFFVSSGLVKNAKEAVDLGNMLVKEKYIKHVVDEHDFKNEKLFYEYTEIMKFRASNNPHLSVIGQE-EGVSISDEDLEEIAF-SMQWGLKTYPRCFIGEELVKWLVGNGYAKGVNHAVAIGNLLMEKRLVHHVTYEHQFKNENLFYQLSEE 193          
BLAST of mRNA_C-australica_Contig_1014.4.2 vs. uniprot
Match: A0A8C4R2I3_EPTBU (Uncharacterized protein n=2 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4R2I3_EPTBU)

HSP 1 Score: 112 bits (280), Expect = 6.600e-23
Identity = 68/214 (31.78%), Postives = 104/214 (48.60%), Query Frame = 3
Query:  177 ALGCFRAMSRSPSLGDESRFWLLANEMKSELE---------IKDRTWKLKTYKQCFVSSEAVKWLVKTGFAVDEEAAVGMGQVMLEEGYIAHVSSGHDFINAYLFYRFLPNLDAPSTHEEVAAPIDQSWDCEALAAEMRQVIAVRDRTWRLMTFKSCWLGTDAVKWLISSGNAKDEKQAVEMGQAMLNRGLLYHVARNHGFRNIPLFYRFAVDE 791
            A+ C R   RS  LG E   W+L  E   +L          I+DR  K+ T+ +CF+ S+ V WL + G   +E+  V +GQ +LE G I HVS  H F N  L YRF  +        E+   I +          +   + ++D+ + L T KS  +    V WL+S G+ +  ++AV +G  + N G ++HV     F++ PL +RF  DE
Sbjct:  384 AIVCEREHRRSLKLGMERDAWMLITEKGEKLYHMMGLHPGLIRDRKKKMSTFPKCFLGSDFVTWLNEVGEIGNEDEGVNLGQALLENGIIHHVSDKHQFKNEPLLYRFRYDDGTFKPRNEMQDMIAKGVRVYCRLHSLFTPV-IKDKDYHLKTHKSVIMANRLVDWLVSQGDCRSREEAVVLGAGLCNNGFMHHVLEKSEFKDEPLLFRFYADE 596          
BLAST of mRNA_C-australica_Contig_1014.4.2 vs. uniprot
Match: H3AA93_LATCH (Phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H3AA93_LATCH)

HSP 1 Score: 109 bits (273), Expect = 4.980e-22
Identity = 68/237 (28.69%), Postives = 117/237 (49.37%), Query Frame = 3
Query:  192 RAMSRSPSLGDESRFWLLANEMKSELE---------IKDRTWKLKTYKQCFVSSEAVKWLVKTGFAVDEEAAVGMGQVMLEEGYIAHVSSGHDFINAYLFYRFLPNLDAPSTHEEVAAPIDQSWDCEALAAEMRQVIA--VRDRTWRLMTFKSCWLGTDAVKWLISSGNAKDEKQAVEMGQAMLNRGLLYHVARNHGFRNIPLFYRFAVDEPPSAAAPNSTQKERIRQSIKASFSVM 869
            R   +S SLG E   W++ +E   +L          IKDR  KL T+ +CF+ SE V WL++ G     E  V +GQ +LE G I HV+  H F   ++ YRF  +        E+   I +      L   +  +    +RD+ + L T+KS  +    + WLI+ G+ +  ++A+ +G  + N G ++HV     F++ PL +RF  DE    +   +T+ + ++  +K + +V+
Sbjct:  321 RERRKSLSLGMEQDTWVMVSEKGEKLYHMMCKQGNLIKDRKRKLTTFPKCFLGSEFVAWLMEIGEIHKPEEGVHLGQALLENGIIHHVTDKHQFKPEHMLYRFRYDDGTYHPRSEIQDVISKG---VRLYCRLHSLFTPVIRDKDYHLRTYKSVVMANKLIDWLIAQGDCRTREEAIILGVELCNNGFMHHVLEKSEFKDEPLLFRFFADEEMEGS---NTKHKHMKHDLKIAENVI 551          
BLAST of mRNA_C-australica_Contig_1014.4.2 vs. uniprot
Match: UPI0006D924EB (phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 2 protein n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=UPI0006D924EB)

HSP 1 Score: 109 bits (273), Expect = 5.070e-22
Identity = 68/237 (28.69%), Postives = 117/237 (49.37%), Query Frame = 3
Query:  192 RAMSRSPSLGDESRFWLLANEMKSELE---------IKDRTWKLKTYKQCFVSSEAVKWLVKTGFAVDEEAAVGMGQVMLEEGYIAHVSSGHDFINAYLFYRFLPNLDAPSTHEEVAAPIDQSWDCEALAAEMRQVIA--VRDRTWRLMTFKSCWLGTDAVKWLISSGNAKDEKQAVEMGQAMLNRGLLYHVARNHGFRNIPLFYRFAVDEPPSAAAPNSTQKERIRQSIKASFSVM 869
            R   +S SLG E   W++ +E   +L          IKDR  KL T+ +CF+ SE V WL++ G     E  V +GQ +LE G I HV+  H F   ++ YRF  +        E+   I +      L   +  +    +RD+ + L T+KS  +    + WLI+ G+ +  ++A+ +G  + N G ++HV     F++ PL +RF  DE    +   +T+ + ++  +K + +V+
Sbjct:  360 RERRKSLSLGMEQDTWVMVSEKGEKLYHMMCKQGNLIKDRKRKLTTFPKCFLGSEFVAWLMEIGEIHKPEEGVHLGQALLENGIIHHVTDKHQFKPEHMLYRFRYDDGTYHPRSEIQDVISKG---VRLYCRLHSLFTPVIRDKDYHLRTYKSVVMANKLIDWLIAQGDCRTREEAIILGVELCNNGFMHHVLEKSEFKDEPLLFRFFADEEMEGS---NTKHKHMKHDLKIAENVI 590          
BLAST of mRNA_C-australica_Contig_1014.4.2 vs. uniprot
Match: A0A8C8FJA8_ONCTS (Phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 n=1 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=A0A8C8FJA8_ONCTS)

HSP 1 Score: 108 bits (271), Expect = 8.460e-22
Identity = 64/192 (33.33%), Postives = 95/192 (49.48%), Query Frame = 3
Query:  258 KSELEIKDRTWKLKTYKQCFVSSEAVKWLVKTGFAVDEEAAVGMGQVMLEEGYIAHVSSGHDFINAYLFYRFLPNLDAPSTHEEVAAPIDQSWDCEALAAEMRQVIAVRDRTWRLMTFKSCWLGTDAVKWLISSGNAKDEKQAVEMGQAMLNRGLLYHVARNHGFRNIPLFYRFAVDEPPSAAAPNSTQKER 833
            KS   IKDR  KL T  +CF+ +E V WL ++G     +  V +GQ +LE G I HVS  H F N  +FYRF  +        E+   + +   C  + +     I+++DR + L TFKS    +  V WL+S G+    ++AV MG  + N   ++HV     F++   F+RF  DE        S Q +R
Sbjct:  140 KSRHLIKDRRRKLTTVPKCFMGNEFVSWLTESGEISTPDEGVNLGQALLENGIIHHVSDKHQFKNEPVFYRFRYDDGTYKARSEMEDIMSKVSICVGINS-----ISIQDRDYHLKTFKSVLPASKLVDWLLSQGDCSTREEAVTMGVGLCNNAFMHHVLEKTEFKDESQFFRFYADEEMEGTNSKSKQLQR 326          
BLAST of mRNA_C-australica_Contig_1014.4.2 vs. uniprot
Match: A0A8C8FII9_ONCTS (Phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 n=1 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=A0A8C8FII9_ONCTS)

HSP 1 Score: 108 bits (271), Expect = 8.790e-22
Identity = 64/192 (33.33%), Postives = 95/192 (49.48%), Query Frame = 3
Query:  258 KSELEIKDRTWKLKTYKQCFVSSEAVKWLVKTGFAVDEEAAVGMGQVMLEEGYIAHVSSGHDFINAYLFYRFLPNLDAPSTHEEVAAPIDQSWDCEALAAEMRQVIAVRDRTWRLMTFKSCWLGTDAVKWLISSGNAKDEKQAVEMGQAMLNRGLLYHVARNHGFRNIPLFYRFAVDEPPSAAAPNSTQKER 833
            KS   IKDR  KL T  +CF+ +E V WL ++G     +  V +GQ +LE G I HVS  H F N  +FYRF  +        E+   + +   C  + +     I+++DR + L TFKS    +  V WL+S G+    ++AV MG  + N   ++HV     F++   F+RF  DE        S Q +R
Sbjct:  246 KSRHLIKDRRRKLTTVPKCFMGNEFVSWLTESGEISTPDEGVNLGQALLENGIIHHVSDKHQFKNEPVFYRFRYDDGTYKARSEMEDIMSKVSICVGINS-----ISIQDRDYHLKTFKSVLPASKLVDWLLSQGDCSTREEAVTMGVGLCNNAFMHHVLEKTEFKDESQFFRFYADEEMEGTNSKSKQLQR 432          
BLAST of mRNA_C-australica_Contig_1014.4.2 vs. uniprot
Match: A0A8C8FHX4_ONCTS (Phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 n=1 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=A0A8C8FHX4_ONCTS)

HSP 1 Score: 108 bits (271), Expect = 8.920e-22
Identity = 64/192 (33.33%), Postives = 95/192 (49.48%), Query Frame = 3
Query:  258 KSELEIKDRTWKLKTYKQCFVSSEAVKWLVKTGFAVDEEAAVGMGQVMLEEGYIAHVSSGHDFINAYLFYRFLPNLDAPSTHEEVAAPIDQSWDCEALAAEMRQVIAVRDRTWRLMTFKSCWLGTDAVKWLISSGNAKDEKQAVEMGQAMLNRGLLYHVARNHGFRNIPLFYRFAVDEPPSAAAPNSTQKER 833
            KS   IKDR  KL T  +CF+ +E V WL ++G     +  V +GQ +LE G I HVS  H F N  +FYRF  +        E+   + +   C  + +     I+++DR + L TFKS    +  V WL+S G+    ++AV MG  + N   ++HV     F++   F+RF  DE        S Q +R
Sbjct:  241 KSRHLIKDRRRKLTTVPKCFMGNEFVSWLTESGEISTPDEGVNLGQALLENGIIHHVSDKHQFKNEPVFYRFRYDDGTYKARSEMEDIMSKVSICVGINS-----ISIQDRDYHLKTFKSVLPASKLVDWLLSQGDCSTREEAVTMGVGLCNNAFMHHVLEKTEFKDESQFFRFYADEEMEGTNSKSKQLQR 427          
BLAST of mRNA_C-australica_Contig_1014.4.2 vs. uniprot
Match: A0A8C8FI91_ONCTS (Phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 n=1 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=A0A8C8FI91_ONCTS)

HSP 1 Score: 108 bits (271), Expect = 9.170e-22
Identity = 64/192 (33.33%), Postives = 95/192 (49.48%), Query Frame = 3
Query:  258 KSELEIKDRTWKLKTYKQCFVSSEAVKWLVKTGFAVDEEAAVGMGQVMLEEGYIAHVSSGHDFINAYLFYRFLPNLDAPSTHEEVAAPIDQSWDCEALAAEMRQVIAVRDRTWRLMTFKSCWLGTDAVKWLISSGNAKDEKQAVEMGQAMLNRGLLYHVARNHGFRNIPLFYRFAVDEPPSAAAPNSTQKER 833
            KS   IKDR  KL T  +CF+ +E V WL ++G     +  V +GQ +LE G I HVS  H F N  +FYRF  +        E+   + +   C  + +     I+++DR + L TFKS    +  V WL+S G+    ++AV MG  + N   ++HV     F++   F+RF  DE        S Q +R
Sbjct:  324 KSRHLIKDRRRKLTTVPKCFMGNEFVSWLTESGEISTPDEGVNLGQALLENGIIHHVSDKHQFKNEPVFYRFRYDDGTYKARSEMEDIMSKVSICVGINS-----ISIQDRDYHLKTFKSVLPASKLVDWLLSQGDCSTREEAVTMGVGLCNNAFMHHVLEKTEFKDESQFFRFYADEEMEGTNSKSKQLQR 510          
BLAST of mRNA_C-australica_Contig_1014.4.2 vs. uniprot
Match: A0A8C8FHR0_ONCTS (Phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 n=3 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=A0A8C8FHR0_ONCTS)

HSP 1 Score: 108 bits (271), Expect = 9.200e-22
Identity = 64/192 (33.33%), Postives = 95/192 (49.48%), Query Frame = 3
Query:  258 KSELEIKDRTWKLKTYKQCFVSSEAVKWLVKTGFAVDEEAAVGMGQVMLEEGYIAHVSSGHDFINAYLFYRFLPNLDAPSTHEEVAAPIDQSWDCEALAAEMRQVIAVRDRTWRLMTFKSCWLGTDAVKWLISSGNAKDEKQAVEMGQAMLNRGLLYHVARNHGFRNIPLFYRFAVDEPPSAAAPNSTQKER 833
            KS   IKDR  KL T  +CF+ +E V WL ++G     +  V +GQ +LE G I HVS  H F N  +FYRF  +        E+   + +   C  + +     I+++DR + L TFKS    +  V WL+S G+    ++AV MG  + N   ++HV     F++   F+RF  DE        S Q +R
Sbjct:  324 KSRHLIKDRRRKLTTVPKCFMGNEFVSWLTESGEISTPDEGVNLGQALLENGIIHHVSDKHQFKNEPVFYRFRYDDGTYKARSEMEDIMSKVSICVGINS-----ISIQDRDYHLKTFKSVLPASKLVDWLLSQGDCSTREEAVTMGVGLCNNAFMHHVLEKTEFKDESQFFRFYADEEMEGTNSKSKQLQR 510          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1014.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0N715_9CHLO6.090e-3438.86Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
X6M966_RETFI3.370e-2733.52Uncharacterized protein n=1 Tax=Reticulomyxa filos... [more]
A0A8C4R2I3_EPTBU6.600e-2331.78Uncharacterized protein n=2 Tax=Eptatretus burgeri... [more]
H3AA93_LATCH4.980e-2228.69Phosphatidylinositol-3,4,5-trisphosphate dependent... [more]
UPI0006D924EB5.070e-2228.69phosphatidylinositol 3,4,5-trisphosphate-dependent... [more]
A0A8C8FJA8_ONCTS8.460e-2233.33Phosphatidylinositol-3,4,5-trisphosphate-dependent... [more]
A0A8C8FII9_ONCTS8.790e-2233.33Phosphatidylinositol-3,4,5-trisphosphate-dependent... [more]
A0A8C8FHX4_ONCTS8.920e-2233.33Phosphatidylinositol-3,4,5-trisphosphate-dependent... [more]
A0A8C8FI91_ONCTS9.170e-2233.33Phosphatidylinositol-3,4,5-trisphosphate-dependent... [more]
A0A8C8FHR0_ONCTS9.200e-2233.33Phosphatidylinositol-3,4,5-trisphosphate-dependent... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1014contigC-australica_Contig_1014:5208..6932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7897.ENSLACP00000006564
Preferred namePREX2
PFAMsDEP,PH,RhoGEF
Model size1247
Max annot lvl33208|Metazoa
KEGG koko:K12365,ko:K17588
KEGG Pathwayko04062,ko05167,map04062,map05167
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0001932,GO:0001933,GO:0003674,GO:0005085,GO:0005088,GO:0005089,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006469,GO:0007154,GO:0007165,GO:0007186,GO:0007275,GO:0007399,GO:0007610,GO:0007626,GO:0008047,GO:0008150,GO:0008344,GO:0009653,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0014065,GO:0016020,GO:0016043,GO:0016358,GO:0017016,GO:0017048,GO:0019220,GO:0019222,GO:0019899,GO:0022008,GO:0023051,GO:0023052,GO:0023057,GO:0030030,GO:0030154,GO:0030182,GO:0030234,GO:0030534,GO:0030676,GO:0030695,GO:0031175,GO:0031267,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032006,GO:0032007,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0033673,GO:0035556,GO:0042325,GO:0042326,GO:0043085,GO:0043086,GO:0043087,GO:0043547,GO:0043549,GO:0044092,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0045859,GO:0045936,GO:0048015,GO:0048017,GO:0048365,GO:0048468,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051020,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051336,GO:0051338,GO:0051345,GO:0051348,GO:0051716,GO:0060255,GO:0060589,GO:0065007,GO:0065009,GO:0071840,GO:0071944,GO:0080090,GO:0098772,GO:0120036,GO:0120039,GO:1902531,GO:1902532
Exons6
Evalue4.71e-23
EggNOG OGsKOG3519@1|root,KOG3519@2759|Eukaryota,38H4U@33154|Opisthokonta,3BE0P@33208|Metazoa,3CZ8M@33213|Bilateria,480MZ@7711|Chordata,495HW@7742|Vertebrata
DescriptionRac guanyl-nucleotide exchange factor activity
Cds size1011
COG categoryT
BRITEko00000,ko00001,ko01009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1014.4.2prot_C-australica_Contig_1014.4.2Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1014 5247..6735 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586748.7158175-UTR-C-australica_Contig_1014:5207..52461682586748.7158175-UTR-C-australica_Contig_1014:5207..5246Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1014 5208..5246 -
1682586748.8032656-UTR-C-australica_Contig_1014:6735..69321682586748.8032656-UTR-C-australica_Contig_1014:6735..6932Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1014 6736..6932 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586748.728853-CDS-C-australica_Contig_1014:5246..56241682586748.728853-CDS-C-australica_Contig_1014:5246..5624Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1014 5247..5624 -
1682586748.7378244-CDS-C-australica_Contig_1014:5827..59561682586748.7378244-CDS-C-australica_Contig_1014:5827..5956Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1014 5828..5956 -
1682586748.7483177-CDS-C-australica_Contig_1014:6042..63481682586748.7483177-CDS-C-australica_Contig_1014:6042..6348Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1014 6043..6348 -
1682586748.7627013-CDS-C-australica_Contig_1014:6406..65021682586748.7627013-CDS-C-australica_Contig_1014:6406..6502Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1014 6407..6502 -
1682586748.7784367-CDS-C-australica_Contig_1014:6566..66511682586748.7784367-CDS-C-australica_Contig_1014:6566..6651Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1014 6567..6651 -
1682586748.7911189-CDS-C-australica_Contig_1014:6718..67351682586748.7911189-CDS-C-australica_Contig_1014:6718..6735Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1014 6719..6735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1014.4.2

>prot_C-australica_Contig_1014.4.2 ID=prot_C-australica_Contig_1014.4.2|Name=mRNA_C-australica_Contig_1014.4.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=337bp
MSRSPSLGDESRFWLLANEMKSELEIKDRTWKLKTYKQCFVSSEAVKWLV
KTGFAVDEEAAVGMGQVMLEEGYIAHVSSGHDFINAYLFYRFLPNLDAPS
THEEVAAPIDQSWDCEALAAEMRQVIAVRDRTWRLMTFKSCWLGTDAVKW
LISSGNAKDEKQAVEMGQAMLNRGLLYHVARNHGFRNIPLFYRFAVDEPP
SAAAPNSTQKERIRQSIKASFSVMSVGSSNHSMISQISALSSSRSTRSTA
SKLFGNNQKCCDASSSPERRGSKRFKQQELGEGSENQPPKKAAVVTVADL
MAAAEAEKAEKGEEGERPDVADEPEPIVDTAEEVWV*
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mRNA from alignment at C-australica_Contig_1014:5208..6932-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1014.4.2 ID=mRNA_C-australica_Contig_1014.4.2|Name=mRNA_C-australica_Contig_1014.4.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1725bp|location=Sequence derived from alignment at C-australica_Contig_1014:5208..6932- (Chrysoparadoxa australica CS_1217)
CCTTCCGAGTTTCGCCTTTCGCTGCTCTCGCTCTCTTGCTCTGAGCGGAC CTTGTTCAGGATTGGTAGAAGTACCGTTTTTATTAGAGCTCCCAAAATTC TTTCGCCCGAGCAGATATATCTGGAGCACGCAGAAAGGGGGAGAAGGGGA CTCCCACTAGATCCTAGAGCGTGCGTGCCCTTGGTTGCTTCAGGGCCATG AGCAGGTCTCCAAGGTCCCCCCATTCTAGTTCTAATCCACCTTCCCGCCT CTCTCTTACCATGCTTCGCCTCCTTCCACAGCCTGGGAGATGAGAGCCGC TTCTGGTTGCTGGCAAATGAAATGAAGTCAGAGCTTGAGATAAAGGACAG AACTTGGAAGCTGAAGGTGCTCTTATCCCGCCCTCCTGGCTCACTTTCCC TCCCTAACTTACTCTCCCCCTTACCTCCAGACCTACAAACAGTGCTTTGT GAGCTCAGAAGCTGTGAAATGGCTAGTTAAAACAGGCTTTGCCGTCGATG AGGAAGCAGCCGTGGGGATGGGTCAGGTGAGCTATGCCATCCCTCCCTTC CTTATTTGGCCTCTGAGTGACCCTCCTTGCTCAGGTAATGCTTGAGGAAG GCTACATCGCTCACGTCTCAAGCGGCCATGACTTCATCAATGCGTATCTG TTCTACCGTTTCCTGCCCAACCTTGACGCCCCAAGCACCCATGAAGAAGT TGCAGCCCCTATAGATCAGTCATGGGACTGTGAGGCCTTGGCAGCTGAGA TGCGGCAAGTCATCGCAGTCAGGGACCGCACCTGGCGGCTCATGACATTT AAGTCGTGCTGGCTTGGCACCGATGCGGTCAAGTGGCTCATCAGCAGCGG GAACGCCAAGGACGAGAAGCAGGCAGTGGAGATGGGGCAGGTAGGCTGGC AACAAGATATGACAGACGCTCTGCACTGTGAGCTAACGACGCACCTGTGA ATCCATCCTCCGCGGCATTGAACCAGGCCATGCTGAATAGAGGGCTCCTG TACCACGTTGCTCGGAATCACGGCTTTCGGAACATCCCCCTTTTCTACCG CTTTGCTGTCGACGAGCCGCCAAGCGCGGCTGCACCAAACTCCACCCAGA AAGAGGTGAGGTGGCGGTTGCTGCCAACCTGCAGACTGACAGACTCACAG ACTGACATGACAAACTTATGAATCAATCAATCTGTCTGCTCCTGGCTGGG AGGATGTGGCGAGAGGCGAGGCAGAACACCATTCATTACACTGGCATGCA TGCATTGCTCCCCTTCCTCACTCACGCTTACGCACAATCTTGCCTCCTTG GATCACAGCGCATCCGCCAGTCCATCAAGGCCTCCTTCTCGGTCATGTCT GTGGGAAGCAGCAACCACTCCATGATTAGCCAGATCAGCGCCCTCAGCTC TAGCAGGTCAACAAGATCAACAGCGAGCAAGCTGTTTGGCAACAACCAGA AGTGCTGTGATGCTAGCAGCTCGCCGGAAAGAAGAGGCAGTAAGCGGTTC AAGCAGCAGGAGCTGGGAGAGGGTTCCGAGAACCAGCCACCCAAAAAGGC GGCAGTGGTGACGGTGGCTGATCTCATGGCTGCAGCTGAAGCTGAGAAGG CAGAGAAGGGAGAGGAGGGAGAGCGGCCTGATGTGGCGGATGAACCTGAA CCTATTGTGGACACAGCTGAAGAGGTCTGGGTGTAGCCTAGGAGGGCTGC AGGCTGCAGCCGGGCAAGCAACTAC
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Coding sequence (CDS) from alignment at C-australica_Contig_1014:5208..6932-

>mRNA_C-australica_Contig_1014.4.2 ID=mRNA_C-australica_Contig_1014.4.2|Name=mRNA_C-australica_Contig_1014.4.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1011bp|location=Sequence derived from alignment at C-australica_Contig_1014:5208..6932- (Chrysoparadoxa australica CS_1217)
ATGAGCAGGTCTCCAAGCCTGGGAGATGAGAGCCGCTTCTGGTTGCTGGC
AAATGAAATGAAGTCAGAGCTTGAGATAAAGGACAGAACTTGGAAGCTGA
AGACCTACAAACAGTGCTTTGTGAGCTCAGAAGCTGTGAAATGGCTAGTT
AAAACAGGCTTTGCCGTCGATGAGGAAGCAGCCGTGGGGATGGGTCAGGT
AATGCTTGAGGAAGGCTACATCGCTCACGTCTCAAGCGGCCATGACTTCA
TCAATGCGTATCTGTTCTACCGTTTCCTGCCCAACCTTGACGCCCCAAGC
ACCCATGAAGAAGTTGCAGCCCCTATAGATCAGTCATGGGACTGTGAGGC
CTTGGCAGCTGAGATGCGGCAAGTCATCGCAGTCAGGGACCGCACCTGGC
GGCTCATGACATTTAAGTCGTGCTGGCTTGGCACCGATGCGGTCAAGTGG
CTCATCAGCAGCGGGAACGCCAAGGACGAGAAGCAGGCAGTGGAGATGGG
GCAGGCCATGCTGAATAGAGGGCTCCTGTACCACGTTGCTCGGAATCACG
GCTTTCGGAACATCCCCCTTTTCTACCGCTTTGCTGTCGACGAGCCGCCA
AGCGCGGCTGCACCAAACTCCACCCAGAAAGAGCGCATCCGCCAGTCCAT
CAAGGCCTCCTTCTCGGTCATGTCTGTGGGAAGCAGCAACCACTCCATGA
TTAGCCAGATCAGCGCCCTCAGCTCTAGCAGGTCAACAAGATCAACAGCG
AGCAAGCTGTTTGGCAACAACCAGAAGTGCTGTGATGCTAGCAGCTCGCC
GGAAAGAAGAGGCAGTAAGCGGTTCAAGCAGCAGGAGCTGGGAGAGGGTT
CCGAGAACCAGCCACCCAAAAAGGCGGCAGTGGTGACGGTGGCTGATCTC
ATGGCTGCAGCTGAAGCTGAGAAGGCAGAGAAGGGAGAGGAGGGAGAGCG
GCCTGATGTGGCGGATGAACCTGAACCTATTGTGGACACAGCTGAAGAGG
TCTGGGTGTAG
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