mRNA_C-australica_Contig_1014.4.2 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1014.4.2 vs. uniprot
Match: A0A7S0N715_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N715_9CHLO) HSP 1 Score: 135 bits (341), Expect = 6.090e-34 Identity = 82/211 (38.86%), Postives = 108/211 (51.18%), Query Frame = 3 Query: 267 LEIKDRTWKLKTYKQCFVSSEAVKWLVKTGFAVDEEAAVGMGQVMLEEGYIAHVSSGHDFINAYLFYRFLPNL-------------DAPSTHEEVAAPID----------------QSWDCEAL--------AAEMRQVIAVRDRTWRLMTFKSCWLGTDAVKWLISSGNAKDEKQAVEMGQAMLNRGLLYHVARNHGFRNIPLFYRFAVD 788 +E+ DRT L TY QCFV S+AV WLV+ G A EAAV +G+ ML+E I HV + HDF +A FYRF P L A S H +A +D + D AL A M +A D +R T++ C++G+DAV WL+ +G A E+ A+ +G ML GL+YHV H F N LFYRF +D Sbjct: 5 VEVADRTHHLNTYDQCFVGSDAVAWLVRAGEAESAEAAVALGRKMLKERIIYHVLNEHDFQDARFFYRFHPALRAEAEGGASTNEAGAESQHGASSASLDGKDLQDGEGKRSFQLATADDAGALSDAELVERAQRMAAGVAAGDHAYRFKTYEECFVGSDAVAWLVRAGEAASEEAAIALGNRMLKAGLMYHVLDEHNFENAHLFYRFHLD 215
BLAST of mRNA_C-australica_Contig_1014.4.2 vs. uniprot
Match: X6M966_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6M966_RETFI) HSP 1 Score: 118 bits (295), Expect = 3.370e-27 Identity = 61/182 (33.52%), Postives = 106/182 (58.24%), Query Frame = 3 Query: 243 LANEMKSELEIKDRTWKLKTYKQCFVSSEAVKWLVKTGFAVDEEAAVGMGQVMLEEGYIAHVSSGHDFINAYLFYRFLPNLDAPSTHEEVAAPIDQSWDCEALAAEMRQVIAVRDRTWRLMTFKSCWLGTDAVKWLISSGNAKDEKQAVEMGQAMLNRGLLYHVARNHGFRNIPLFYRFAVD 788 +A ++ +EIKDRT+ KTYKQCF+ ++ V++ V +G + + AV +G ++++E YI HV HDF N LFY + + +++ + I Q + +++ E + IA W L T+ C++G + VKWL+ +G AK AV +G ++ + L++HV H F+N LFY+ + + Sbjct: 14 IALQIAKHVEIKDRTYHFKTYKQCFLGTDVVRFFVSSGLVKNAKEAVDLGNMLVKEKYIKHVVDEHDFKNEKLFYEYTEIMKFRASNNPHLSVIGQE-EGVSISDEDLEEIAF-SMQWGLKTYPRCFIGEELVKWLVGNGYAKGVNHAVAIGNLLMEKRLVHHVTYEHQFKNENLFYQLSEE 193
BLAST of mRNA_C-australica_Contig_1014.4.2 vs. uniprot
Match: A0A8C4R2I3_EPTBU (Uncharacterized protein n=2 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4R2I3_EPTBU) HSP 1 Score: 112 bits (280), Expect = 6.600e-23 Identity = 68/214 (31.78%), Postives = 104/214 (48.60%), Query Frame = 3 Query: 177 ALGCFRAMSRSPSLGDESRFWLLANEMKSELE---------IKDRTWKLKTYKQCFVSSEAVKWLVKTGFAVDEEAAVGMGQVMLEEGYIAHVSSGHDFINAYLFYRFLPNLDAPSTHEEVAAPIDQSWDCEALAAEMRQVIAVRDRTWRLMTFKSCWLGTDAVKWLISSGNAKDEKQAVEMGQAMLNRGLLYHVARNHGFRNIPLFYRFAVDE 791 A+ C R RS LG E W+L E +L I+DR K+ T+ +CF+ S+ V WL + G +E+ V +GQ +LE G I HVS H F N L YRF + E+ I + + + ++D+ + L T KS + V WL+S G+ + ++AV +G + N G ++HV F++ PL +RF DE Sbjct: 384 AIVCEREHRRSLKLGMERDAWMLITEKGEKLYHMMGLHPGLIRDRKKKMSTFPKCFLGSDFVTWLNEVGEIGNEDEGVNLGQALLENGIIHHVSDKHQFKNEPLLYRFRYDDGTFKPRNEMQDMIAKGVRVYCRLHSLFTPV-IKDKDYHLKTHKSVIMANRLVDWLVSQGDCRSREEAVVLGAGLCNNGFMHHVLEKSEFKDEPLLFRFYADE 596
BLAST of mRNA_C-australica_Contig_1014.4.2 vs. uniprot
Match: H3AA93_LATCH (Phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H3AA93_LATCH) HSP 1 Score: 109 bits (273), Expect = 4.980e-22 Identity = 68/237 (28.69%), Postives = 117/237 (49.37%), Query Frame = 3 Query: 192 RAMSRSPSLGDESRFWLLANEMKSELE---------IKDRTWKLKTYKQCFVSSEAVKWLVKTGFAVDEEAAVGMGQVMLEEGYIAHVSSGHDFINAYLFYRFLPNLDAPSTHEEVAAPIDQSWDCEALAAEMRQVIA--VRDRTWRLMTFKSCWLGTDAVKWLISSGNAKDEKQAVEMGQAMLNRGLLYHVARNHGFRNIPLFYRFAVDEPPSAAAPNSTQKERIRQSIKASFSVM 869 R +S SLG E W++ +E +L IKDR KL T+ +CF+ SE V WL++ G E V +GQ +LE G I HV+ H F ++ YRF + E+ I + L + + +RD+ + L T+KS + + WLI+ G+ + ++A+ +G + N G ++HV F++ PL +RF DE + +T+ + ++ +K + +V+ Sbjct: 321 RERRKSLSLGMEQDTWVMVSEKGEKLYHMMCKQGNLIKDRKRKLTTFPKCFLGSEFVAWLMEIGEIHKPEEGVHLGQALLENGIIHHVTDKHQFKPEHMLYRFRYDDGTYHPRSEIQDVISKG---VRLYCRLHSLFTPVIRDKDYHLRTYKSVVMANKLIDWLIAQGDCRTREEAIILGVELCNNGFMHHVLEKSEFKDEPLLFRFFADEEMEGS---NTKHKHMKHDLKIAENVI 551
BLAST of mRNA_C-australica_Contig_1014.4.2 vs. uniprot
Match: UPI0006D924EB (phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 2 protein n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=UPI0006D924EB) HSP 1 Score: 109 bits (273), Expect = 5.070e-22 Identity = 68/237 (28.69%), Postives = 117/237 (49.37%), Query Frame = 3 Query: 192 RAMSRSPSLGDESRFWLLANEMKSELE---------IKDRTWKLKTYKQCFVSSEAVKWLVKTGFAVDEEAAVGMGQVMLEEGYIAHVSSGHDFINAYLFYRFLPNLDAPSTHEEVAAPIDQSWDCEALAAEMRQVIA--VRDRTWRLMTFKSCWLGTDAVKWLISSGNAKDEKQAVEMGQAMLNRGLLYHVARNHGFRNIPLFYRFAVDEPPSAAAPNSTQKERIRQSIKASFSVM 869 R +S SLG E W++ +E +L IKDR KL T+ +CF+ SE V WL++ G E V +GQ +LE G I HV+ H F ++ YRF + E+ I + L + + +RD+ + L T+KS + + WLI+ G+ + ++A+ +G + N G ++HV F++ PL +RF DE + +T+ + ++ +K + +V+ Sbjct: 360 RERRKSLSLGMEQDTWVMVSEKGEKLYHMMCKQGNLIKDRKRKLTTFPKCFLGSEFVAWLMEIGEIHKPEEGVHLGQALLENGIIHHVTDKHQFKPEHMLYRFRYDDGTYHPRSEIQDVISKG---VRLYCRLHSLFTPVIRDKDYHLRTYKSVVMANKLIDWLIAQGDCRTREEAIILGVELCNNGFMHHVLEKSEFKDEPLLFRFFADEEMEGS---NTKHKHMKHDLKIAENVI 590
BLAST of mRNA_C-australica_Contig_1014.4.2 vs. uniprot
Match: A0A8C8FJA8_ONCTS (Phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 n=1 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=A0A8C8FJA8_ONCTS) HSP 1 Score: 108 bits (271), Expect = 8.460e-22 Identity = 64/192 (33.33%), Postives = 95/192 (49.48%), Query Frame = 3 Query: 258 KSELEIKDRTWKLKTYKQCFVSSEAVKWLVKTGFAVDEEAAVGMGQVMLEEGYIAHVSSGHDFINAYLFYRFLPNLDAPSTHEEVAAPIDQSWDCEALAAEMRQVIAVRDRTWRLMTFKSCWLGTDAVKWLISSGNAKDEKQAVEMGQAMLNRGLLYHVARNHGFRNIPLFYRFAVDEPPSAAAPNSTQKER 833 KS IKDR KL T +CF+ +E V WL ++G + V +GQ +LE G I HVS H F N +FYRF + E+ + + C + + I+++DR + L TFKS + V WL+S G+ ++AV MG + N ++HV F++ F+RF DE S Q +R Sbjct: 140 KSRHLIKDRRRKLTTVPKCFMGNEFVSWLTESGEISTPDEGVNLGQALLENGIIHHVSDKHQFKNEPVFYRFRYDDGTYKARSEMEDIMSKVSICVGINS-----ISIQDRDYHLKTFKSVLPASKLVDWLLSQGDCSTREEAVTMGVGLCNNAFMHHVLEKTEFKDESQFFRFYADEEMEGTNSKSKQLQR 326
BLAST of mRNA_C-australica_Contig_1014.4.2 vs. uniprot
Match: A0A8C8FII9_ONCTS (Phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 n=1 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=A0A8C8FII9_ONCTS) HSP 1 Score: 108 bits (271), Expect = 8.790e-22 Identity = 64/192 (33.33%), Postives = 95/192 (49.48%), Query Frame = 3 Query: 258 KSELEIKDRTWKLKTYKQCFVSSEAVKWLVKTGFAVDEEAAVGMGQVMLEEGYIAHVSSGHDFINAYLFYRFLPNLDAPSTHEEVAAPIDQSWDCEALAAEMRQVIAVRDRTWRLMTFKSCWLGTDAVKWLISSGNAKDEKQAVEMGQAMLNRGLLYHVARNHGFRNIPLFYRFAVDEPPSAAAPNSTQKER 833 KS IKDR KL T +CF+ +E V WL ++G + V +GQ +LE G I HVS H F N +FYRF + E+ + + C + + I+++DR + L TFKS + V WL+S G+ ++AV MG + N ++HV F++ F+RF DE S Q +R Sbjct: 246 KSRHLIKDRRRKLTTVPKCFMGNEFVSWLTESGEISTPDEGVNLGQALLENGIIHHVSDKHQFKNEPVFYRFRYDDGTYKARSEMEDIMSKVSICVGINS-----ISIQDRDYHLKTFKSVLPASKLVDWLLSQGDCSTREEAVTMGVGLCNNAFMHHVLEKTEFKDESQFFRFYADEEMEGTNSKSKQLQR 432
BLAST of mRNA_C-australica_Contig_1014.4.2 vs. uniprot
Match: A0A8C8FHX4_ONCTS (Phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 n=1 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=A0A8C8FHX4_ONCTS) HSP 1 Score: 108 bits (271), Expect = 8.920e-22 Identity = 64/192 (33.33%), Postives = 95/192 (49.48%), Query Frame = 3 Query: 258 KSELEIKDRTWKLKTYKQCFVSSEAVKWLVKTGFAVDEEAAVGMGQVMLEEGYIAHVSSGHDFINAYLFYRFLPNLDAPSTHEEVAAPIDQSWDCEALAAEMRQVIAVRDRTWRLMTFKSCWLGTDAVKWLISSGNAKDEKQAVEMGQAMLNRGLLYHVARNHGFRNIPLFYRFAVDEPPSAAAPNSTQKER 833 KS IKDR KL T +CF+ +E V WL ++G + V +GQ +LE G I HVS H F N +FYRF + E+ + + C + + I+++DR + L TFKS + V WL+S G+ ++AV MG + N ++HV F++ F+RF DE S Q +R Sbjct: 241 KSRHLIKDRRRKLTTVPKCFMGNEFVSWLTESGEISTPDEGVNLGQALLENGIIHHVSDKHQFKNEPVFYRFRYDDGTYKARSEMEDIMSKVSICVGINS-----ISIQDRDYHLKTFKSVLPASKLVDWLLSQGDCSTREEAVTMGVGLCNNAFMHHVLEKTEFKDESQFFRFYADEEMEGTNSKSKQLQR 427
BLAST of mRNA_C-australica_Contig_1014.4.2 vs. uniprot
Match: A0A8C8FI91_ONCTS (Phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 n=1 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=A0A8C8FI91_ONCTS) HSP 1 Score: 108 bits (271), Expect = 9.170e-22 Identity = 64/192 (33.33%), Postives = 95/192 (49.48%), Query Frame = 3 Query: 258 KSELEIKDRTWKLKTYKQCFVSSEAVKWLVKTGFAVDEEAAVGMGQVMLEEGYIAHVSSGHDFINAYLFYRFLPNLDAPSTHEEVAAPIDQSWDCEALAAEMRQVIAVRDRTWRLMTFKSCWLGTDAVKWLISSGNAKDEKQAVEMGQAMLNRGLLYHVARNHGFRNIPLFYRFAVDEPPSAAAPNSTQKER 833 KS IKDR KL T +CF+ +E V WL ++G + V +GQ +LE G I HVS H F N +FYRF + E+ + + C + + I+++DR + L TFKS + V WL+S G+ ++AV MG + N ++HV F++ F+RF DE S Q +R Sbjct: 324 KSRHLIKDRRRKLTTVPKCFMGNEFVSWLTESGEISTPDEGVNLGQALLENGIIHHVSDKHQFKNEPVFYRFRYDDGTYKARSEMEDIMSKVSICVGINS-----ISIQDRDYHLKTFKSVLPASKLVDWLLSQGDCSTREEAVTMGVGLCNNAFMHHVLEKTEFKDESQFFRFYADEEMEGTNSKSKQLQR 510
BLAST of mRNA_C-australica_Contig_1014.4.2 vs. uniprot
Match: A0A8C8FHR0_ONCTS (Phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 n=3 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=A0A8C8FHR0_ONCTS) HSP 1 Score: 108 bits (271), Expect = 9.200e-22 Identity = 64/192 (33.33%), Postives = 95/192 (49.48%), Query Frame = 3 Query: 258 KSELEIKDRTWKLKTYKQCFVSSEAVKWLVKTGFAVDEEAAVGMGQVMLEEGYIAHVSSGHDFINAYLFYRFLPNLDAPSTHEEVAAPIDQSWDCEALAAEMRQVIAVRDRTWRLMTFKSCWLGTDAVKWLISSGNAKDEKQAVEMGQAMLNRGLLYHVARNHGFRNIPLFYRFAVDEPPSAAAPNSTQKER 833 KS IKDR KL T +CF+ +E V WL ++G + V +GQ +LE G I HVS H F N +FYRF + E+ + + C + + I+++DR + L TFKS + V WL+S G+ ++AV MG + N ++HV F++ F+RF DE S Q +R Sbjct: 324 KSRHLIKDRRRKLTTVPKCFMGNEFVSWLTESGEISTPDEGVNLGQALLENGIIHHVSDKHQFKNEPVFYRFRYDDGTYKARSEMEDIMSKVSICVGINS-----ISIQDRDYHLKTFKSVLPASKLVDWLLSQGDCSTREEAVTMGVGLCNNAFMHHVLEKTEFKDESQFFRFYADEEMEGTNSKSKQLQR 510 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1014.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1014.4.2 >prot_C-australica_Contig_1014.4.2 ID=prot_C-australica_Contig_1014.4.2|Name=mRNA_C-australica_Contig_1014.4.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=337bp MSRSPSLGDESRFWLLANEMKSELEIKDRTWKLKTYKQCFVSSEAVKWLVback to top mRNA from alignment at C-australica_Contig_1014:5208..6932- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1014.4.2 ID=mRNA_C-australica_Contig_1014.4.2|Name=mRNA_C-australica_Contig_1014.4.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1725bp|location=Sequence derived from alignment at C-australica_Contig_1014:5208..6932- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1014:5208..6932- >mRNA_C-australica_Contig_1014.4.2 ID=mRNA_C-australica_Contig_1014.4.2|Name=mRNA_C-australica_Contig_1014.4.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1011bp|location=Sequence derived from alignment at C-australica_Contig_1014:5208..6932- (Chrysoparadoxa australica CS_1217)back to top |