mRNA_C-australica_Contig_10133.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10133.1.1
Unique NamemRNA_C-australica_Contig_10133.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_10133.1.1 vs. uniprot
Match: H8W6J2_MARN1 (Uncharacterized protein n=7 Tax=Marinobacter nauticus TaxID=2743 RepID=H8W6J2_MARN1)

HSP 1 Score: 70.9 bits (172), Expect = 1.480e-14
Identity = 38/60 (63.33%), Postives = 41/60 (68.33%), Query Frame = -1 
Query:   46 MR*KARIIAKLAAKYRALAFFVNGRVGKTHNLTLAVNQGYPE*QRIRAGKGFVNPPYSWL 225
            MR KARIIAKLAAKYRA AFFVN    KT N    VN+GYPE +   A  GFVN PY W+
Sbjct:    1 MRQKARIIAKLAAKYRASAFFVNALAEKTANFFPFVNEGYPEYRAPGAEIGFVNKPYRWV 60
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BLAST of mRNA_C-australica_Contig_10133.1.1 vs. uniprot
Match: UPI001C96F196 (hypothetical protein n=3 Tax=Marinobacter daepoensis TaxID=262077 RepID=UPI001C96F196)

HSP 1 Score: 68.6 bits (166), Expect = 1.210e-13
Identity = 38/60 (63.33%), Postives = 40/60 (66.67%), Query Frame = -1 
Query:   46 MR*KARIIAKLAAKYRALAFFVNGRVGKTHNLTLAVNQGYPE*QRIRAGKGFVNPPYSWL 225
            MR KARIIAKLAAKYRA A FVN RV KT  L   VN+GYPE Q       FVN PY W+
Sbjct:    1 MRQKARIIAKLAAKYRASASFVNARVLKTAKLFPRVNEGYPEYQAAAGEIVFVNKPYRWV 60
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10133.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
H8W6J2_MARN11.480e-1463.33Uncharacterized protein n=7 Tax=Marinobacter nauti... [more]
UPI001C96F1961.210e-1363.33hypothetical protein n=3 Tax=Marinobacter daepoens... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10133contigC-australica_Contig_10133:9..239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size231
Hectar predicted targeting categoryother localisation
Exons1
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586748.4085894-CDS-C-australica_Contig_10133:8..2391682586748.4085894-CDS-C-australica_Contig_10133:8..239Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10133 9..239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10133.1.1prot_C-australica_Contig_10133.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10133 9..239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10133.1.1

>prot_C-australica_Contig_10133.1.1 ID=prot_C-australica_Contig_10133.1.1|Name=mRNA_C-australica_Contig_10133.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=77bp
ITNVQRRSGRVFQGVKPAIRRIDKSFSCPNPLSFGISLIYSQCQIMGFPD
SSIDKKSQRPIFCRQFCDNTRLLAHL*
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mRNA from alignment at C-australica_Contig_10133:9..239+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10133.1.1 ID=mRNA_C-australica_Contig_10133.1.1|Name=mRNA_C-australica_Contig_10133.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=231bp|location=Sequence derived from alignment at C-australica_Contig_10133:9..239+ (Chrysoparadoxa australica CS_1217)
ATTACAAACGTGCAACGTCGCTCAGGCCGCGTATTTCAGGGGGTTAAGCC
AGCTATAAGGAGGATTGACAAATCCTTTTCCTGCCCGAATCCGTTGTCAT
TCGGGATATCCCTGATTTACAGCCAATGTCAAATTATGGGTTTTCCCGAC
TCTTCCATTGACAAAAAAAGCCAACGCCCTATATTTTGCCGCCAGTTTTG
CGATAATACGCGCCTTCTAGCGCATCTATAA
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Coding sequence (CDS) from alignment at C-australica_Contig_10133:9..239+

>mRNA_C-australica_Contig_10133.1.1 ID=mRNA_C-australica_Contig_10133.1.1|Name=mRNA_C-australica_Contig_10133.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=231bp|location=Sequence derived from alignment at C-australica_Contig_10133:9..239+ (Chrysoparadoxa australica CS_1217)
ATTACAAACGTGCAACGTCGCTCAGGCCGCGTATTTCAGGGGGTTAAGCC
AGCTATAAGGAGGATTGACAAATCCTTTTCCTGCCCGAATCCGTTGTCAT
TCGGGATATCCCTGATTTACAGCCAATGTCAAATTATGGGTTTTCCCGAC
TCTTCCATTGACAAAAAAAGCCAACGCCCTATATTTTGCCGCCAGTTTTG
CGATAATACGCGCCTTCTAGCGCATCTATAA
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