mRNA_C-australica_Contig_10132.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10132.2.1
Unique NamemRNA_C-australica_Contig_10132.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10132.2.1 vs. uniprot
Match: A0A3D5S1X8_9BACT (Arginine decarboxylase n=3 Tax=Bacteria TaxID=2 RepID=A0A3D5S1X8_9BACT)

HSP 1 Score: 238 bits (607), Expect = 1.470e-74
Identity = 110/141 (78.01%), Postives = 129/141 (91.49%), Query Frame = 1
Query:    1 MKSYSDLIEQTFYFPSKEFRVENDQIFFHDVNLMNIIKEYGTPLKLTYLPKISENIQFAKKIFNDAITKLNYKGSYTYCYCTKSSHFQFVLAEGLKNDIHLETSSAFDIPIVERLYETGHIKKDKFIVCNGFKRHLYLENI 423
            MKSY+DLIEQTFYFP+KEFRVEN+Q++FHDVNLM II++YGTPLKL+YLPKIS+NIQFAKKIFNDAI K  Y+G+Y+YCYCTKSSHF+FVL EGL+NDIHLETSSA+DIPI+ RL ETGH  KD+ +VCNGFKR LYL+ I
Sbjct:    1 MKSYADLIEQTFYFPTKEFRVENNQLWFHDVNLMEIIEQYGTPLKLSYLPKISQNIQFAKKIFNDAIAKNKYEGTYSYCYCTKSSHFKFVLEEGLRNDIHLETSSAYDIPIIRRLNETGHFSKDRMVVCNGFKRPLYLQYI 141          
BLAST of mRNA_C-australica_Contig_10132.2.1 vs. uniprot
Match: A0A3D9L8Q1_MARFU (Arginine decarboxylase n=1 Tax=Marinoscillum furvescens DSM 4134 TaxID=1122208 RepID=A0A3D9L8Q1_MARFU)

HSP 1 Score: 233 bits (594), Expect = 1.310e-72
Identity = 111/141 (78.72%), Postives = 127/141 (90.07%), Query Frame = 1
Query:    1 MKSYSDLIEQTFYFPSKEFRVENDQIFFHDVNLMNIIKEYGTPLKLTYLPKISENIQFAKKIFNDAITKLNYKGSYTYCYCTKSSHFQFVLAEGLKNDIHLETSSAFDIPIVERLYETGHIKKDKFIVCNGFKRHLYLENI 423
            MKSYSDLIEQTFYFP+KEFRVENDQ+ FHDV+LM II++YGTPLKLTYLPKISENIQFAK+IF DAI K NY+GSYTYCYCTKSSHFQFVLAE LKNDIH+ETSSA+DIPIV  L+ +G I K+K +VCNG+KR LY++ I
Sbjct:    1 MKSYSDLIEQTFYFPTKEFRVENDQLKFHDVDLMEIIRQYGTPLKLTYLPKISENIQFAKQIFGDAIKKHNYEGSYTYCYCTKSSHFQFVLAEALKNDIHIETSSAYDIPIVRHLHASGLIDKNKMVVCNGYKRPLYVQYI 141          
BLAST of mRNA_C-australica_Contig_10132.2.1 vs. uniprot
Match: A0A654DUS2_9BACT (Arginine decarboxylase n=1 Tax=Marinoscillum sp. 108 TaxID=2653151 RepID=A0A654DUS2_9BACT)

HSP 1 Score: 228 bits (582), Expect = 8.260e-71
Identity = 110/141 (78.01%), Postives = 124/141 (87.94%), Query Frame = 1
Query:    1 MKSYSDLIEQTFYFPSKEFRVENDQIFFHDVNLMNIIKEYGTPLKLTYLPKISENIQFAKKIFNDAITKLNYKGSYTYCYCTKSSHFQFVLAEGLKNDIHLETSSAFDIPIVERLYETGHIKKDKFIVCNGFKRHLYLENI 423
            MKSYSDLIEQTFYFP+KEFRVEN+ ++FHDVNLM IIKEYGTPLKL+YLPKISENIQFAKKIF DAI K +Y G+Y YCYCTKSSHFQFVL E LKNDIH+ETSSA+DIPIV  L ++G + KD+ IVCNGFKR LYL+ I
Sbjct:    1 MKSYSDLIEQTFYFPTKEFRVENNLLWFHDVNLMEIIKEYGTPLKLSYLPKISENIQFAKKIFTDAIQKNSYDGTYRYCYCTKSSHFQFVLEEALKNDIHIETSSAYDIPIVRNLNKSGLLSKDRMIVCNGFKRPLYLQYI 141          
BLAST of mRNA_C-australica_Contig_10132.2.1 vs. uniprot
Match: A0A5E8A957_9BACT (Biosynthetic arginine decarboxylase n=1 Tax=Imperialibacter sp. EC-SDR9 TaxID=2038371 RepID=A0A5E8A957_9BACT)

HSP 1 Score: 216 bits (549), Expect = 7.330e-66
Identity = 101/141 (71.63%), Postives = 120/141 (85.11%), Query Frame = 1
Query:    1 MKSYSDLIEQTFYFPSKEFRVENDQIFFHDVNLMNIIKEYGTPLKLTYLPKISENIQFAKKIFNDAITKLNYKGSYTYCYCTKSSHFQFVLAEGLKNDIHLETSSAFDIPIVERLYETGHIKKDKFIVCNGFKRHLYLENI 423
            MKSY DLI+QTF FP++EFRVEN+Q+ F++VNLM++I++YGTPLKLTYLPKISE IQ+AK+IFN+AI K  Y G YTYCYCTKSSHF FVL E LKNDIH+ETSSA+DIPIV  L+E G I KD F+VCNGFKR LY E +
Sbjct:    1 MKSYFDLIDQTFEFPTEEFRVENNQLLFNEVNLMDVIEQYGTPLKLTYLPKISERIQYAKEIFNNAIAKHKYGGKYTYCYCTKSSHFSFVLEEALKNDIHIETSSAYDIPIVRNLFEKGKISKDTFVVCNGFKRPLYTEYV 141          
BLAST of mRNA_C-australica_Contig_10132.2.1 vs. uniprot
Match: UPI00197AFA76 (arginine decarboxylase n=2 Tax=Fulvivirga TaxID=396811 RepID=UPI00197AFA76)

HSP 1 Score: 212 bits (540), Expect = 1.580e-64
Identity = 100/141 (70.92%), Postives = 117/141 (82.98%), Query Frame = 1
Query:    1 MKSYSDLIEQTFYFPSKEFRVENDQIFFHDVNLMNIIKEYGTPLKLTYLPKISENIQFAKKIFNDAITKLNYKGSYTYCYCTKSSHFQFVLAEGLKNDIHLETSSAFDIPIVERLYETGHIKKDKFIVCNGFKRHLYLENI 423
            MK Y DLIEQTFYFP KEF+V ND++ FHDV LM+IIK+YGTPLKLTYLPKI ENI++AKK+F DA  K  Y+GSYTYCYCTKSSHF F+L E L NDIH+ETSS++DIPIV +L+E G I K+ +IVCNGFKR LY E I
Sbjct:    1 MKKYVDLIEQTFYFPQKEFQVINDELHFHDVPLMDIIKKYGTPLKLTYLPKIGENIRYAKKLFADAFEKHKYEGSYTYCYCTKSSHFNFILEEALNNDIHIETSSSYDIPIVRKLHEKGKINKNTYIVCNGFKRPLYREYI 141          
BLAST of mRNA_C-australica_Contig_10132.2.1 vs. uniprot
Match: A0A6C0GWY4_9BACT (Arginine decarboxylase n=1 Tax=Rhodocytophaga rosea TaxID=2704465 RepID=A0A6C0GWY4_9BACT)

HSP 1 Score: 210 bits (534), Expect = 1.240e-63
Identity = 98/137 (71.53%), Postives = 120/137 (87.59%), Query Frame = 1
Query:    1 MKSYSDLIEQTFYFPSKEFRVENDQIFFHDVNLMNIIKEYGTPLKLTYLPKISENIQFAKKIFNDAITKLNYKGSYTYCYCTKSSHFQFVLAEGLKNDIHLETSSAFDIPIVERLYETGHIKKDKFIVCNGFKRHLY 411
            M+SY DLIEQTF FP++EFRV N++++F++V LM+IIKEYGTPLKLTYLPKISE+IQ+AK+IFN+AI K  YKGSYTYCYCTKSSHFQFVL E LKN+IHLETSSA+DI IV  L++ G I KD +++CNG+KR LY
Sbjct:    1 MQSYIDLIEQTFDFPTEEFRVVNNELYFNEVPLMDIIKEYGTPLKLTYLPKISEHIQYAKEIFNNAIKKFRYKGSYTYCYCTKSSHFQFVLEEALKNNIHLETSSAYDIAIVNELFKRGKISKDTYVICNGYKRELY 137          
BLAST of mRNA_C-australica_Contig_10132.2.1 vs. uniprot
Match: A0A1W2GBA2_9BACT (Arginine decarboxylase n=1 Tax=Reichenbachiella faecimaris TaxID=692418 RepID=A0A1W2GBA2_9BACT)

HSP 1 Score: 209 bits (532), Expect = 2.420e-63
Identity = 101/141 (71.63%), Postives = 118/141 (83.69%), Query Frame = 1
Query:    1 MKSYSDLIEQTFYFPSKEFRVENDQIFFHDVNLMNIIKEYGTPLKLTYLPKISENIQFAKKIFNDAITKLNYKGSYTYCYCTKSSHFQFVLAEGLKNDIHLETSSAFDIPIVERLYETGHIKKDKFIVCNGFKRHLYLENI 423
            MK Y DLI+QTFYFP++EF V+N+Q+FF+ VNLMNIIKE+GTPLKLTYLPKISENIQ AK IF +AI K  Y GSYTYCYCTKS+HF FVL E LKN+IH+ETSSA+DI IVE L+E G I KD +I+CNG+KR  YLE I
Sbjct:    1 MKKYRDLIDQTFYFPTQEFDVKNNQLFFNGVNLMNIIKEHGTPLKLTYLPKISENIQNAKAIFAEAIKKKKYNGSYTYCYCTKSNHFSFVLEEALKNNIHIETSSAYDISIVEALFERGLITKDTYIICNGYKRPHYLEKI 141          
BLAST of mRNA_C-australica_Contig_10132.2.1 vs. uniprot
Match: UPI001F1E0831 (arginine decarboxylase n=2 Tax=Fulvivirga TaxID=396811 RepID=UPI001F1E0831)

HSP 1 Score: 209 bits (531), Expect = 3.650e-63
Identity = 98/141 (69.50%), Postives = 120/141 (85.11%), Query Frame = 1
Query:    1 MKSYSDLIEQTFYFPSKEFRVENDQIFFHDVNLMNIIKEYGTPLKLTYLPKISENIQFAKKIFNDAITKLNYKGSYTYCYCTKSSHFQFVLAEGLKNDIHLETSSAFDIPIVERLYETGHIKKDKFIVCNGFKRHLYLENI 423
            MK Y DLIEQTF FP +EF+VEN+++FF+ V LM+II++YGTPLKL+YLPKISENI +AKKIF++A+ K NY+GSYTYCYCTKSSHF FVL E LKNDIH+ETSS+FDIPIV +L+E   + KD F+VCNGFKR LY + I
Sbjct:    1 MKKYIDLIEQTFEFPQEEFKVENNELFFNGVPLMDIIEKYGTPLKLSYLPKISENINYAKKIFSNAMKKHNYEGSYTYCYCTKSSHFNFVLEEALKNDIHIETSSSFDIPIVRKLHEENKVTKDTFVVCNGFKRPLYKQYI 141          
BLAST of mRNA_C-australica_Contig_10132.2.1 vs. uniprot
Match: UPI00047B8D9B (decarboxylase n=1 Tax=Eisenibacter elegans TaxID=997 RepID=UPI00047B8D9B)

HSP 1 Score: 208 bits (530), Expect = 4.690e-63
Identity = 94/141 (66.67%), Postives = 122/141 (86.52%), Query Frame = 1
Query:    1 MKSYSDLIEQTFYFPSKEFRVENDQIFFHDVNLMNIIKEYGTPLKLTYLPKISENIQFAKKIFNDAITKLNYKGSYTYCYCTKSSHFQFVLAEGLKNDIHLETSSAFDIPIVERLYETGHIKKDKFIVCNGFKRHLYLENI 423
            MKSY DLIEQTF FP+KEF+VE +++FF+++ LM+II+EYGTPLK+TYLPKISE+IQ+AKKIF DA+ K NY+G Y YCYCTK+SHF+FVL E LKND+H+ETSS++DIPIV+ LY++  I KD +++CNGFKR LY + I
Sbjct:    1 MKSYIDLIEQTFDFPTKEFKVEQNELFFNNIPLMDIIEEYGTPLKVTYLPKISEHIQYAKKIFKDAMKKYNYQGDYVYCYCTKASHFKFVLEESLKNDVHIETSSSYDIPIVKHLYKSNKITKDTYVICNGFKRPLYTQYI 141          
BLAST of mRNA_C-australica_Contig_10132.2.1 vs. uniprot
Match: A0A074KY19_9BACT (Decarboxylase n=1 Tax=Anditalea andensis TaxID=1048983 RepID=A0A074KY19_9BACT)

HSP 1 Score: 207 bits (528), Expect = 9.330e-63
Identity = 100/141 (70.92%), Postives = 118/141 (83.69%), Query Frame = 1
Query:    1 MKSYSDLIEQTFYFPSKEFRVENDQIFFHDVNLMNIIKEYGTPLKLTYLPKISENIQFAKKIFNDAITKLNYKGSYTYCYCTKSSHFQFVLAEGLKNDIHLETSSAFDIPIVERLYETGHIKKDKFIVCNGFKRHLYLENI 423
            M  Y+DLI+QTF FP+KEF VE++++ F+ V+LMNII+EYGTPLKLTYLPKISENIQ AK IFN+AI   +YKG+YTYCYCTKSSHF FV+ E LKNDIH+ETSS+FDIPIV  LYE G I KD +IVCNGFKR LY + I
Sbjct:    1 MNKYADLIQQTFDFPTKEFHVEDNKLHFNGVDLMNIIEEYGTPLKLTYLPKISENIQNAKTIFNNAIKSHDYKGNYTYCYCTKSSHFSFVMDEALKNDIHIETSSSFDIPIVRNLYERGKITKDTYIVCNGFKRDLYKKYI 141          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10132.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5S1X8_9BACT1.470e-7478.01Arginine decarboxylase n=3 Tax=Bacteria TaxID=2 Re... [more]
A0A3D9L8Q1_MARFU1.310e-7278.72Arginine decarboxylase n=1 Tax=Marinoscillum furve... [more]
A0A654DUS2_9BACT8.260e-7178.01Arginine decarboxylase n=1 Tax=Marinoscillum sp. 1... [more]
A0A5E8A957_9BACT7.330e-6671.63Biosynthetic arginine decarboxylase n=1 Tax=Imperi... [more]
UPI00197AFA761.580e-6470.92arginine decarboxylase n=2 Tax=Fulvivirga TaxID=39... [more]
A0A6C0GWY4_9BACT1.240e-6371.53Arginine decarboxylase n=1 Tax=Rhodocytophaga rose... [more]
A0A1W2GBA2_9BACT2.420e-6371.63Arginine decarboxylase n=1 Tax=Reichenbachiella fa... [more]
UPI001F1E08313.650e-6369.50arginine decarboxylase n=2 Tax=Fulvivirga TaxID=39... [more]
UPI00047B8D9B4.690e-6366.67decarboxylase n=1 Tax=Eisenibacter elegans TaxID=9... [more]
A0A074KY19_9BACT9.330e-6370.92Decarboxylase n=1 Tax=Anditalea andensis TaxID=104... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10132contigC-australica_Contig_10132:412..834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1048983.EL17_17320
Preferred namespeA
PFAMsOrn_Arg_deC_N,Orn_DAP_Arg_deC
Model size423
Max annot lvl976|Bacteroidetes
KEGG rclassRC00299
KEGG koko:K01585
KEGG ReactionR00566
KEGG Pathwayko00330,ko01100,map00330,map01100
KEGG ModuleM00133
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.53e-63
EggNOG OGsCOG0019@1|root,COG0019@2|Bacteria,4NFHV@976|Bacteroidetes,47JRV@768503|Cytophagia
EC4.1.1.19
DescriptionPFAM Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Cds size423
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586748.3750594-CDS-C-australica_Contig_10132:411..8341682586748.3750594-CDS-C-australica_Contig_10132:411..834Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10132 412..834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10132.2.1prot_C-australica_Contig_10132.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10132 412..834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10132.2.1

>prot_C-australica_Contig_10132.2.1 ID=prot_C-australica_Contig_10132.2.1|Name=mRNA_C-australica_Contig_10132.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=141bp
MKSYSDLIEQTFYFPSKEFRVENDQIFFHDVNLMNIIKEYGTPLKLTYLP
KISENIQFAKKIFNDAITKLNYKGSYTYCYCTKSSHFQFVLAEGLKNDIH
LETSSAFDIPIVERLYETGHIKKDKFIVCNGFKRHLYLENI
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mRNA from alignment at C-australica_Contig_10132:412..834+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10132.2.1 ID=mRNA_C-australica_Contig_10132.2.1|Name=mRNA_C-australica_Contig_10132.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=423bp|location=Sequence derived from alignment at C-australica_Contig_10132:412..834+ (Chrysoparadoxa australica CS_1217)
ATGAAAAGCTATAGTGACCTCATTGAGCAAACTTTTTATTTTCCTAGTAA AGAGTTTCGAGTAGAGAATGATCAAATTTTTTTCCATGATGTTAATCTGA TGAATATCATCAAGGAATATGGAACACCACTCAAACTCACCTATCTCCCG AAAATTTCCGAAAATATTCAGTTTGCAAAGAAGATTTTCAACGATGCAAT CACCAAGCTGAATTATAAGGGATCCTATACCTATTGTTATTGTACCAAAT CATCACACTTTCAATTTGTCCTGGCAGAAGGTCTGAAAAATGATATCCAT TTGGAAACCTCCTCTGCTTTTGATATCCCAATTGTAGAGCGTCTGTATGA AACCGGACATATCAAAAAAGACAAATTCATAGTTTGTAATGGCTTTAAAA GGCATTTATACCTTGAGAATATC
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Coding sequence (CDS) from alignment at C-australica_Contig_10132:412..834+

>mRNA_C-australica_Contig_10132.2.1 ID=mRNA_C-australica_Contig_10132.2.1|Name=mRNA_C-australica_Contig_10132.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=423bp|location=Sequence derived from alignment at C-australica_Contig_10132:412..834+ (Chrysoparadoxa australica CS_1217)
ATGAAAAGCTATAGTGACCTCATTGAGCAAACTTTTTATTTTCCTAGTAA
AGAGTTTCGAGTAGAGAATGATCAAATTTTTTTCCATGATGTTAATCTGA
TGAATATCATCAAGGAATATGGAACACCACTCAAACTCACCTATCTCCCG
AAAATTTCCGAAAATATTCAGTTTGCAAAGAAGATTTTCAACGATGCAAT
CACCAAGCTGAATTATAAGGGATCCTATACCTATTGTTATTGTACCAAAT
CATCACACTTTCAATTTGTCCTGGCAGAAGGTCTGAAAAATGATATCCAT
TTGGAAACCTCCTCTGCTTTTGATATCCCAATTGTAGAGCGTCTGTATGA
AACCGGACATATCAAAAAAGACAAATTCATAGTTTGTAATGGCTTTAAAA
GGCATTTATACCTTGAGAATATC
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