mRNA_C-australica_Contig_10131.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10131.1.1
Unique NamemRNA_C-australica_Contig_10131.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_10131.1.1 vs. uniprot
Match: UPI001CA6AA1D (sterol desaturase family protein n=1 Tax=Algiphilus sp. NNCM1 TaxID=2834409 RepID=UPI001CA6AA1D)

HSP 1 Score: 107 bits (266), Expect = 8.380e-27
Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:    1 PVLTLGAFWLLPQPGLAATWMAALAGMTLLYEWTHFIVHSRIKPRSAFAQKLFQNHRLHHFRNEHYWYSFTVPQVDAMFGTAPDATDVPRTPTCRTL 291
            PVL   A+WL+P   LA + +       L YEWTHF+VH+RI+P + + Q LF+ HR+HHFRNE+YWY FT+  VD   GT PD    PR+P CR L
Sbjct:  121 PVLFAAAWWLMPDRALALSALVGYGLAALNYEWTHFMVHTRIQPGNRYYQSLFRAHRMHHFRNENYWYGFTLTSVDRWLGTGPDPDATPRSPHCRDL 217
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BLAST of mRNA_C-australica_Contig_10131.1.1 vs. uniprot
Match: A0A3M1ZWA0_9DELT (Fatty acid hydroxylase family protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1ZWA0_9DELT)

HSP 1 Score: 105 bits (263), Expect = 2.900e-26
Identity = 49/97 (50.52%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:    4 VLTLGAFWLL-PQPGLAATWMAALAGMTLLYEWTHFIVHSRIKPRSAFAQKLFQNHRLHHFRNEHYWYSFTVPQVDAMFGTAPDATDVPRTPTCRTL 291
            V+ + A WLL P   L  T +A +AG+ L YEW H++VHSR +PRS F  +L+++HRLHHF+NEHYW+  ++   D + GT PD   VP +PTCRTL
Sbjct:  118 VVEIAAVWLLLPTWPLRLTALATMAGLGLWYEWIHYLVHSRYRPRSRFIARLYRHHRLHHFKNEHYWFGVSMTSGDRLLGTMPDHRTVPTSPTCRTL 214
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BLAST of mRNA_C-australica_Contig_10131.1.1 vs. uniprot
Match: A0A2D5ENV0_9DELT (Fatty acid hydroxylase n=2 Tax=Myxococcales TaxID=29 RepID=A0A2D5ENV0_9DELT)

HSP 1 Score: 106 bits (264), Expect = 3.000e-26
Identity = 50/94 (53.19%), Postives = 64/94 (68.09%), Query Frame = 1 
Query:   19 AFWLL---PQPGLAATWMAALAGMTLLYEWTHFIVHSRIKPRSAFAQKLFQNHRLHHFRNEHYWYSFTVPQVDAMFGTAPDATDVPRTPTCRTL 291
            AFW++     P  AAT +AA + M LLYEWTHF+VH+ +KP+S F +++ +NHR HH+RNE YWYSF  P VD   GT PD   VPR+PT   L
Sbjct:  149 AFWVVVTGASPRKAATGIAAYSTMALLYEWTHFLVHTGVKPKSRFFKRVRRNHRFHHYRNEDYWYSFVYPDVDRWLGTEPDPKSVPRSPTAMKL 242
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BLAST of mRNA_C-australica_Contig_10131.1.1 vs. uniprot
Match: A0A356T4U9_9DELT (Fatty acid hydroxylase n=2 Tax=Myxococcales TaxID=29 RepID=A0A356T4U9_9DELT)

HSP 1 Score: 103 bits (256), Expect = 2.760e-25
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:   19 AFWLLPQP--GLAATWMAALAGMTLLYEWTHFIVHSRIKPRSAFAQKLFQNHRLHHFRNEHYWYSFTVPQVDAMFGTAPDATDVPRTPTCRTL 291
            AFW L  P  G+  T +AA    TL+YEWTH++ H+  +PR  + + + +NHR+HHFRNE YW+SFT P +D  FGT P+ ++VPR+ TC TL
Sbjct:  128 AFWWLVSPTTGVMLTGIAAFTAATLVYEWTHYLTHTPYRPRGRYYRWIRRNHRMHHFRNEAYWHSFTAPFLDTAFGTGPEPSEVPRSETCHTL 220
[Close]
BLAST of mRNA_C-australica_Contig_10131.1.1 vs. uniprot
Match: UPI00069415D2 (sterol desaturase family protein n=1 Tax=Algiphilus aromaticivorans TaxID=382454 RepID=UPI00069415D2)

HSP 1 Score: 102 bits (254), Expect = 6.020e-25
Identity = 47/97 (48.45%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:    1 PVLTLGAFWLLPQPGLAATWMAALAGMTLLYEWTHFIVHSRIKPRSAFAQKLFQNHRLHHFRNEHYWYSFTVPQVDAMFGTAPDATDVPRTPTCRTL 291
            P+L    +W  P P LA + +       L YEWTHF+VH+RI+P++ + Q LF+ HR+HHFRNE YWY FT+  VD M GT PD    PR+  CR L
Sbjct:  127 PLLLALGWWAAPDPALAMSALVGYGFAALNYEWTHFMVHTRIQPQNRYYQGLFRAHRMHHFRNEKYWYGFTLTSVDRMLGTGPDPDVTPRSEHCRDL 223
[Close]
BLAST of mRNA_C-australica_Contig_10131.1.1 vs. uniprot
Match: A0A2E6VPB9_9DELT (Fatty acid hydroxylase domain-containing protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E6VPB9_9DELT)

HSP 1 Score: 102 bits (253), Expect = 2.990e-24
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:    7 LTLGAFWLL-PQPGLAATWMAALAGMTLLYEWTHFIVHSRIKPRSAFAQKLFQNHRLHHFRNEHYWYSFTVPQVDAMFGTAPDATDVPRTPTCRTL 291
            L   A+W L P    A T M      TL+YEW H++ H+  KPR+ F + +++NHRLHHF+NEHYW+SFT+P +D + GT P   DV  T TC TL
Sbjct:  168 LHFSAWWFLSPDKYFAFTGMTVFTAATLIYEWVHYLTHTNHKPRTRFYKTIWRNHRLHHFKNEHYWHSFTMPVIDVIMGTCPSPKDVDATKTCMTL 263
[Close]
BLAST of mRNA_C-australica_Contig_10131.1.1 vs. uniprot
Match: A0A1Q5HXS3_9ACTN (Fatty acid hydroxylase n=2 Tax=Streptomyces sp. CB02009 TaxID=1703938 RepID=A0A1Q5HXS3_9ACTN)

HSP 1 Score: 97.4 bits (241), Expect = 4.230e-23
Identity = 44/92 (47.83%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:   19 AFWLLPQPGLAATWMAALAGMTLLYEWTHFIVHSRIKPRSAFAQKLFQNHRLHHFRNEHYWYSFTVPQV-DAMFGTAPDATDVPRTPTCRTL 291
            AF   P  G A T+MA +A + L+YEWTH+++HS  KPRSA  + +++NHR HH++NEHYW++ T     D +FGT PD   VP +PT + L
Sbjct:  122 AFLAFPTLGQALTFMATVAAVGLVYEWTHYLIHSEYKPRSASYKAVWRNHRFHHYKNEHYWFTVTTTATADRLFGTYPDPASVPTSPTAKNL 213
[Close]
BLAST of mRNA_C-australica_Contig_10131.1.1 vs. uniprot
Match: A0A839RQT5_9MYCO (Fatty acid hydroxylase domain-containing protein n=2 Tax=Hoyosella TaxID=697025 RepID=A0A839RQT5_9MYCO)

HSP 1 Score: 97.4 bits (241), Expect = 4.520e-23
Identity = 44/98 (44.90%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:    1 PVLTLGAFWLLPQPGLAATWMAALAGMTLLYEWTHFIVHSRIKPRSAFAQKLFQNHRLHHFRNEHYWYSFTVP-QVDAMFGTAPDATDVPRTPTCRTL 291
            P L   AF  LP+PGLA T++  ++ + L YEWTHF++HS  +P+S F + +++NHR HHF+NEHYW++ T     D + GT PD   V  +PT + L
Sbjct:  118 PTLVAAAFLALPRPGLALTFILTMSAIGLAYEWTHFLIHSNYRPQSRFYRAIWRNHRNHHFKNEHYWFTVTTSGTADRVLGTYPDPKAVETSPTAKNL 215
[Close]
BLAST of mRNA_C-australica_Contig_10131.1.1 vs. uniprot
Match: UPI0003B5EB8C (sterol desaturase family protein n=1 Tax=Perlucidibaca piscinae TaxID=392589 RepID=UPI0003B5EB8C)

HSP 1 Score: 97.4 bits (241), Expect = 5.370e-23
Identity = 49/97 (50.52%), Postives = 65/97 (67.01%), Query Frame = 1 
Query:    1 PVLTLGAFWLLPQPGLAATWMAALAGMTLLYEWTHFIVHSRIKPRSAFAQKLFQNHRLHHFRNEHYWYSFTVPQVDAMFGTAPDATDVPRTPTCRTL 291
            P+L L A  LLP   +A +++       L YEWTH+IVH+RI+PRSA+ Q +F+NHRLHHFR+E YW+SF +P +D   GT PDA  V  + T R L
Sbjct:  123 PMLVL-AVPLLPDRAVALSFLTGFGLAALNYEWTHWIVHTRIQPRSAYYQAVFRNHRLHHFRHEDYWFSFMLPALDRWLGTGPDAASVAPSGTARDL 218
[Close]
BLAST of mRNA_C-australica_Contig_10131.1.1 vs. uniprot
Match: A0A1I1X6V7_9DELT (Fatty acid hydroxylase superfamily protein n=3 Tax=Nannocystis TaxID=53 RepID=A0A1I1X6V7_9DELT)

HSP 1 Score: 96.7 bits (239), Expect = 1.160e-22
Identity = 43/90 (47.78%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:   22 FWLLPQPGLAATWMAALAGMTLLYEWTHFIVHSRIKPRSAFAQKLFQNHRLHHFRNEHYWYSFTVPQVDAMFGTAPDATDVPRTPTCRTL 291
            F L P P +A + +     M  LYEWTH++ H+  KPR  F +++++ HRLHHF+NEHYW   T    D + GT PD T VP +PTCRTL
Sbjct:  131 FLLAPTPQVALSGVVGSVTMAFLYEWTHYLTHTGYKPRGEFYRRIWRYHRLHHFKNEHYWQGVTTHLGDRILGTMPDHTGVPNSPTCRTL 220
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10131.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001CA6AA1D8.380e-2750.52sterol desaturase family protein n=1 Tax=Algiphilu... [more]
A0A3M1ZWA0_9DELT2.900e-2650.52Fatty acid hydroxylase family protein n=1 Tax=Delt... [more]
A0A2D5ENV0_9DELT3.000e-2653.19Fatty acid hydroxylase n=2 Tax=Myxococcales TaxID=... [more]
A0A356T4U9_9DELT2.760e-2549.46Fatty acid hydroxylase n=2 Tax=Myxococcales TaxID=... [more]
UPI00069415D26.020e-2548.45sterol desaturase family protein n=1 Tax=Algiphilu... [more]
A0A2E6VPB9_9DELT2.990e-2447.92Fatty acid hydroxylase domain-containing protein n... [more]
A0A1Q5HXS3_9ACTN4.230e-2347.83Fatty acid hydroxylase n=2 Tax=Streptomyces sp. CB... [more]
A0A839RQT5_9MYCO4.520e-2344.90Fatty acid hydroxylase domain-containing protein n... [more]
UPI0003B5EB8C5.370e-2350.52sterol desaturase family protein n=1 Tax=Perlucidi... [more]
A0A1I1X6V7_9DELT1.160e-2247.78Fatty acid hydroxylase superfamily protein n=3 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10131contigC-australica_Contig_10131:541..831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1415780.JPOG01000001_gene1553
PFAMsFA_hydroxylase
Model size291
Max annot lvl135614|Xanthomonadales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue9.87e-26
EggNOG OGsCOG3000@1|root,COG3000@2|Bacteria,1PRD8@1224|Proteobacteria,1SEVS@1236|Gammaproteobacteria,1XAX5@135614|Xanthomonadales
DescriptionFatty acid hydroxylase superfamily
Cds size291
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586748.3182592-CDS-C-australica_Contig_10131:540..8311682586748.3182592-CDS-C-australica_Contig_10131:540..831Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10131 541..831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10131.1.1prot_C-australica_Contig_10131.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10131 541..831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10131.1.1

>prot_C-australica_Contig_10131.1.1 ID=prot_C-australica_Contig_10131.1.1|Name=mRNA_C-australica_Contig_10131.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=97bp
PVLTLGAFWLLPQPGLAATWMAALAGMTLLYEWTHFIVHSRIKPRSAFAQ
KLFQNHRLHHFRNEHYWYSFTVPQVDAMFGTAPDATDVPRTPTCRTL
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mRNA from alignment at C-australica_Contig_10131:541..831-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10131.1.1 ID=mRNA_C-australica_Contig_10131.1.1|Name=mRNA_C-australica_Contig_10131.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=291bp|location=Sequence derived from alignment at C-australica_Contig_10131:541..831- (Chrysoparadoxa australica CS_1217)
CCGGTGCTCACGCTGGGGGCGTTCTGGCTGCTGCCGCAGCCGGGGCTGGC
CGCTACCTGGATGGCCGCGCTGGCGGGCATGACGCTGCTATACGAGTGGA
CCCACTTCATCGTGCACAGCCGCATCAAGCCGAGGTCCGCCTTCGCCCAG
AAGCTGTTTCAGAATCACCGGCTGCACCATTTCCGCAACGAGCACTACTG
GTACAGCTTCACCGTGCCGCAGGTGGACGCCATGTTCGGCACCGCGCCGG
ATGCCACCGACGTGCCCCGCACGCCGACGTGCCGGACGCTG
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Coding sequence (CDS) from alignment at C-australica_Contig_10131:541..831-

>mRNA_C-australica_Contig_10131.1.1 ID=mRNA_C-australica_Contig_10131.1.1|Name=mRNA_C-australica_Contig_10131.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=291bp|location=Sequence derived from alignment at C-australica_Contig_10131:541..831- (Chrysoparadoxa australica CS_1217)
CCGGTGCTCACGCTGGGGGCGTTCTGGCTGCTGCCGCAGCCGGGGCTGGC
CGCTACCTGGATGGCCGCGCTGGCGGGCATGACGCTGCTATACGAGTGGA
CCCACTTCATCGTGCACAGCCGCATCAAGCCGAGGTCCGCCTTCGCCCAG
AAGCTGTTTCAGAATCACCGGCTGCACCATTTCCGCAACGAGCACTACTG
GTACAGCTTCACCGTGCCGCAGGTGGACGCCATGTTCGGCACCGCGCCGG
ATGCCACCGACGTGCCCCGCACGCCGACGTGCCGGACGCTG
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