mRNA_C-australica_Contig_1013.4.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1013.4.1
Unique NamemRNA_C-australica_Contig_1013.4.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_1013.4.1 vs. uniprot
Match: D8LM97_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM97_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 6.530e-51
Identity = 77/120 (64.17%), Postives = 97/120 (80.83%), Query Frame = 1
Query:    1 QEDELLKEVYTAIRAADERKAGDVRCLKVSHLTVMTEYMIILVGTSRPQNQAIAANIIELMEEKHERICKQQGTPSSGWILLDYGDLIVHIMTPKSRAYYDLDGYWANGEDVDLSQIIKP 360
            ++D  L EV TA++AADERKAG++  ++V+ LTVMTE+M++L G SRPQNQAIA NI E MEE H+R  K QG P SGWILLDYGD+IVHIMTPKSR+YYDL+ +W+NGE V L  ++KP
Sbjct:   33 EDDPTLPEVLTAVKAADERKAGNIVAIRVATLTVMTEFMVVLEGNSRPQNQAIAQNIEEKMEEMHQRKTKSQGAPESGWILLDYGDIIVHIMTPKSRSYYDLESFWSNGERVPLDGVLKP 152          
BLAST of mRNA_C-australica_Contig_1013.4.1 vs. uniprot
Match: A0A835YP01_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP01_9STRA)

HSP 1 Score: 165 bits (418), Expect = 6.230e-50
Identity = 76/119 (63.87%), Postives = 96/119 (80.67%), Query Frame = 1
Query:    4 EDELLKEVYTAIRAADERKAGDVRCLKVSHLTVMTEYMIILVGTSRPQNQAIAANIIELMEEKHERICKQQGTPSSGWILLDYGDLIVHIMTPKSRAYYDLDGYWANGEDVDLSQIIKP 360
            +D  L E+ T  RAAD RKA ++  L+V+ LT++T +M++L GTSRPQNQAIAA+IIE MEE+H R+ KQQGTP SGWILLDYGD+I+HIMTPKSRAYYDL+ +W  GE VDLS ++ P
Sbjct:   33 QDPGLGEILTIARAADARKAQNINALRVAQLTIVTNFMVVLEGTSRPQNQAIAASIIEAMEEEHGRVTKQQGTPDSGWILLDYGDIIIHIMTPKSRAYYDLETFWREGERVDLSGVLVP 151          
BLAST of mRNA_C-australica_Contig_1013.4.1 vs. uniprot
Match: A0A6H5KVM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVM5_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 1.200e-49
Identity = 77/120 (64.17%), Postives = 97/120 (80.83%), Query Frame = 1
Query:    1 QEDELLKEVYTAIRAADERKAGDVRCLKVSHLTVMTEYMIILVGTSRPQNQAIAANIIELMEEKHERICKQQGTPSSGWILLDYGDLIVHIMTPKSRAYYDLDGYWANGEDVDLSQIIKP 360
            ++D  L EV TA++AADERKAG++  ++V+ LTVMTE+M++L G SRPQNQAIA NI E MEE H+R    QGTP SGWILLDYGD+IVHIMTPKSR+YYDL+ +W+NGE V L  ++KP
Sbjct:  131 EDDPTLPEVLTAVKAADERKAGNIVAIRVATLTVMTEFMVVLEGNSRPQNQAIAQNIEEKMEEMHQRKTNSQGTPESGWILLDYGDIIVHIMTPKSRSYYDLESFWSNGERVPLDGVLKP 250          
BLAST of mRNA_C-australica_Contig_1013.4.1 vs. uniprot
Match: A0A7S2Y0E5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0E5_9STRA)

HSP 1 Score: 137 bits (345), Expect = 2.680e-38
Identity = 62/120 (51.67%), Postives = 89/120 (74.17%), Query Frame = 1
Query:    7 DELLKEVYTAIRAADERKAGDVRCLKVSHLTVMTEYMIILVGTSRPQNQAIAANIIELMEEKHERICKQ--QGTPSSGWILLDYGDLIVHIMTPKSRAYYDLDGYWANGEDVDLSQIIKP 360
            D  L EV T ++A D RKA +++ ++VS LTV   +++++ GTSRPQNQAI+  I++ MEE H    ++  +GT  SGW+LLDYGD++VHIMTPKSRA+YD++G+W  GE VDLS ++ P
Sbjct:   83 DPTLPEVLTIVKAGDMRKAQNIKAIRVSSLTVQMSFLVVMSGTSRPQNQAISRAIVDDMEEVHGLRPREPHEGTADSGWMLLDYGDIVVHIMTPKSRAFYDIEGFWGKGEPVDLSGVVLP 202          
BLAST of mRNA_C-australica_Contig_1013.4.1 vs. uniprot
Match: A0A7S0CC84_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CC84_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.260e-37
Identity = 64/121 (52.89%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    7 DELLKEVYTAIRAADERKAGDVRCLKVSHLTVMTEYMIILVGTSRPQNQAIAANIIELMEEKHE-----RICKQQGTPSSGWILLDYGDLIVHIMTPKSRAYYDLDGYWANGEDVDLSQII 354
            D+L   + T ++AADERKA ++R ++VS LT +T ++I+L G SRPQNQAIAA+I++ +EE H+        K +GT  SGWIL+DYGD++VHIMTPKSR +YDL+G W +GE++DLS ++
Sbjct:   88 DDLAPFIRTIVKAADERKADNIRAIRVSKLTAVTCFIIVLSGNSRPQNQAIAASILDDVEEFHDGRKPRNDGKPEGTADSGWILVDYGDVMVHIMTPKSRLFYDLEGQWKSGEEMDLSDVL 208          
BLAST of mRNA_C-australica_Contig_1013.4.1 vs. uniprot
Match: A0A7S0QR45_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QR45_9CRYP)

HSP 1 Score: 134 bits (336), Expect = 1.180e-36
Identity = 61/119 (51.26%), Postives = 87/119 (73.11%), Query Frame = 1
Query:    4 EDELLKEVYTAIRAADERKAGDVRCLKVSHLTVMTEYMIILVGTSRPQNQAIAANIIELMEEKHERICKQQGTPSSGWILLDYGDLIVHIMTPKSRAYYDLDGYWANGEDVDLSQIIKP 360
            ED  L  +   IRAAD+RKA  +  ++V+HLT  TE+ + + G+SRP  QAI+ANI ++M EKH+R  K QGTP SGWILLDYG++IV++MTP +R +YDL+G W +GE + +  I++P
Sbjct:   99 EDPSLPMIEDIIRAADDRKAQSIWAVRVAHLTYSTEFFVNVQGSSRPMLQAISANIEDMMMEKHQRSIKWQGTPDSGWILLDYGEVIVNVMTPAARDFYDLEGLWRHGERIPMDHILQP 217          
BLAST of mRNA_C-australica_Contig_1013.4.1 vs. uniprot
Match: L1JY76_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JY76_GUITC)

HSP 1 Score: 125 bits (315), Expect = 8.040e-34
Identity = 63/119 (52.94%), Postives = 80/119 (67.23%), Query Frame = 1
Query:    4 EDELLKEVYTAIRAADERKAGDVRCLKVSHLTVMTEYMIILVGTSRPQNQAIAANIIELMEEKHERICKQQGTPSSGWILLDYGDLIVHIMTPKSRAYYDLDGYWANGEDVDLSQIIKP 360
            ED  L  V   IRA DERKA  +   +VSHLT  TE+ I   G+SRP  QAIAAN+ ++M EK+ R  K QG P SGWILLDYG++IV+IMT  +R +YDL+ +W NGE V L  ++ P
Sbjct:   61 EDPSLPLVQDIIRAMDERKAESIWAARVSHLTYSTEFFINCQGSSRPMLQAIAANVEDIMNEKYGREIKWQGNPDSGWILLDYGEVIVNIMTAAAREFYDLEEHWQNGELVPLEDLVTP 179          
BLAST of mRNA_C-australica_Contig_1013.4.1 vs. uniprot
Match: A0A7S2C8T3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C8T3_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.610e-33
Identity = 62/122 (50.82%), Postives = 86/122 (70.49%), Query Frame = 1
Query:    1 QEDELLKEVYTAIRAADERKAGDVRCLKVSHLTVMTEYMIILVGTSRPQNQAIAANIIELMEEKHERICKQQGTPSSGWILLDYGDLIVHIMTPKSRAYYDLDGYWANGEDVDLSQII-KPD 363
            ++D LL  V+   +A D+RKA  +  L+VSHLT  TE+ + ++G SRPQN AIAA+I + M+E   R C+  G   SGWILLDYGD+IV++MTP+SR YY L+ +W  GE+VDLS ++  PD
Sbjct:   77 EDDSLLPIVHAIAKAGDKRKAEGILALRVSHLTYTTEFFVNMMGNSRPQNNAIAASIQDDMKELG-RSCRIDGNADSGWILLDYGDVIVNVMTPRSREYYRLEEFWEKGEEVDLSAVLLSPD 197          
BLAST of mRNA_C-australica_Contig_1013.4.1 vs. uniprot
Match: A0A7R9YBC2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBC2_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.310e-33
Identity = 58/113 (51.33%), Postives = 82/113 (72.57%), Query Frame = 1
Query:   25 VYTAIRAADERKAGDVRCLKVSHLTVMTEYMIILVGTSRPQNQAIAANIIELMEEKHERIC-KQQGTPSSGWILLDYGDLIVHIMTPKSRAYYDLDGYWANGEDVDLSQIIKP 360
            V+  +RAAD RKA +     V  +T    +MI+  G SRPQNQAIAA++++ +EE++ R    +QGT  SGWILLDYGD+IVH+MTPKSRAYYDL+G+W NG+ +++  ++ P
Sbjct:   85 VHDIVRAADARKADNPVVYHVESVTPSNSFMIVCSGNSRPQNQAIAAHVVDEVEEQYGRKPDSRQGTAESGWILLDYGDVIVHVMTPKSRAYYDLEGFWKNGKRLEIEHLLLP 197          
BLAST of mRNA_C-australica_Contig_1013.4.1 vs. uniprot
Match: A0A7S0VSN1_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VSN1_9CRYP)

HSP 1 Score: 125 bits (313), Expect = 9.210e-33
Identity = 62/120 (51.67%), Postives = 79/120 (65.83%), Query Frame = 1
Query:    1 QEDELLKEVYTAIRAADERKAGDVRCLKVSHLTVMTEYMIILVGTSRPQNQAIAANIIELMEEKHERICKQQGTPSSGWILLDYGDLIVHIMTPKSRAYYDLDGYWANGEDVDLSQIIKP 360
            +ED  L  +   I AADERK   +   +VSHLT  T + + + GTSRP  QAIAAN+ E+M EKH R  K QG P SGWILLDYGD+IV+I+T  +R YYDL+  W NGE + L  ++ P
Sbjct:  115 EEDPSLPMIEDIIVAADERKGERIWAARVSHLTFTTSFFVNVEGTSRPMLQAIAANVEEMMLEKHGREIKWQGKPDSGWILLDYGDVIVNILTTAAREYYDLESLWKNGELIPLDHLVVP 234          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1013.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM97_ECTSI6.530e-5164.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YP01_9STRA6.230e-5063.87Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KVM5_9PHAE1.200e-4964.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2Y0E5_9STRA2.680e-3851.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0CC84_9STRA1.260e-3752.89Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]
A0A7S0QR45_9CRYP1.180e-3651.26Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
L1JY76_GUITC8.040e-3452.94Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S2C8T3_9STRA1.610e-3350.82Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9YBC2_9STRA2.310e-3351.33Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S0VSN1_9CRYP9.210e-3351.67Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1013contigC-australica_Contig_1013:16193..17028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LM97
PFAMsRsfS
Model size363
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006417,GO:0008150,GO:0009507,GO:0009536,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0017148,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0034248,GO:0034249,GO:0043021,GO:0043023,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:0090069,GO:0090071,GO:2000112,GO:2000113
Exons3
Evalue1.07e-51
EggNOG OGsCOG0799@1|root,2RY19@2759|Eukaryota
Ec32 ortholog descriptionOligomerisation domain
Ec32 orthologEc-05_002000.1
DescriptionRibosomal silencing factor during starvation
Cds size363
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586748.2601616-CDS-C-australica_Contig_1013:16192..162761682586748.2601616-CDS-C-australica_Contig_1013:16192..16276Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1013 16193..16276 +
1682586748.2735288-CDS-C-australica_Contig_1013:16534..167401682586748.2735288-CDS-C-australica_Contig_1013:16534..16740Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1013 16535..16740 +
1682586748.2871218-CDS-C-australica_Contig_1013:16955..170281682586748.2871218-CDS-C-australica_Contig_1013:16955..17028Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1013 16956..17028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1013.4.1prot_C-australica_Contig_1013.4.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1013 16193..17028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1013.4.1

>prot_C-australica_Contig_1013.4.1 ID=prot_C-australica_Contig_1013.4.1|Name=mRNA_C-australica_Contig_1013.4.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=121bp
QEDELLKEVYTAIRAADERKAGDVRCLKVSHLTVMTEYMIILVGTSRPQN
QAIAANIIELMEEKHERICKQQGTPSSGWILLDYGDLIVHIMTPKSRAYY
DLDGYWANGEDVDLSQIIKPD
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mRNA from alignment at C-australica_Contig_1013:16193..17028+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1013.4.1 ID=mRNA_C-australica_Contig_1013.4.1|Name=mRNA_C-australica_Contig_1013.4.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=836bp|location=Sequence derived from alignment at C-australica_Contig_1013:16193..17028+ (Chrysoparadoxa australica CS_1217)
CAGGAGGATGAGCTGTTGAAGGAGGTATATACTGCTATTCGTGCTGCAGA TGAGAGAAAGGCTGGTGATGTGAGGTGTCTCAAGGTGCGTGATCTGTCAG GCAGCAACGCATCAACTTAACTCACTTGATGCTGAATTAGCCAAACGTAG TCATCCCCATGGGATGTAACCATAGTAGGAGTGTGGCTTTATCTGGGAGC TAAATGTAGCAGCCATAGCTAGGGTGCACCTCTAAAGGTTGTTGCTAGAG ATACCATCGGGGCTGGGCAGTATGGCACTGCTTTAATTTGCCTGACAAGA CCTTAAGCCACCCTACCTCACCTTTGGCTCTGACCTGCACAGGTTTCTCA TTTGACGGTTATGACAGAGTACATGATCATCCTTGTCGGCACCAGCAGAC CTCAGAATCAAGCGATAGCAGCCAACATTATTGAGCTGATGGAGGAGAAG CACGAGCGCATTTGCAAGCAGCAGGGAACACCCAGTAGTGGTTGGATACT ACTGGATTACGGTGACTTGATAGTTCACATAATGACGCCTAAGAGCAGGT ACTGGCTGAGACTTTGCAGTTCTGCCAGGGCTGAGCTGAGCTGCTTGAGA CATTGACTGGCGCGCTGAAAACACACCCAAGCACTTCCTCCTCTTTAACC AGCTTTTATAATGCATCTCCTGATGTGATTTATTTCACGCATGGCTTATC AAAATCTACCCATCCTCTCTCTGACCGGCAGTCGTTTTCTCTCCATCCAC CTTCCTTCCACAGAGCGTATTATGATCTAGATGGCTACTGGGCCAATGGC GAAGACGTTGACCTATCTCAGATCATAAAGCCTGAC
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Coding sequence (CDS) from alignment at C-australica_Contig_1013:16193..17028+

>mRNA_C-australica_Contig_1013.4.1 ID=mRNA_C-australica_Contig_1013.4.1|Name=mRNA_C-australica_Contig_1013.4.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=363bp|location=Sequence derived from alignment at C-australica_Contig_1013:16193..17028+ (Chrysoparadoxa australica CS_1217)
CAGGAGGATGAGCTGTTGAAGGAGGTATATACTGCTATTCGTGCTGCAGA
TGAGAGAAAGGCTGGTGATGTGAGGTGTCTCAAGGTTTCTCATTTGACGG
TTATGACAGAGTACATGATCATCCTTGTCGGCACCAGCAGACCTCAGAAT
CAAGCGATAGCAGCCAACATTATTGAGCTGATGGAGGAGAAGCACGAGCG
CATTTGCAAGCAGCAGGGAACACCCAGTAGTGGTTGGATACTACTGGATT
ACGGTGACTTGATAGTTCACATAATGACGCCTAAGAGCAGAGCGTATTAT
GATCTAGATGGCTACTGGGCCAATGGCGAAGACGTTGACCTATCTCAGAT
CATAAAGCCTGAC
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