mRNA_C-australica_Contig_1013.4.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1013.4.1 vs. uniprot
Match: D8LM97_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM97_ECTSI) HSP 1 Score: 167 bits (424), Expect = 6.530e-51 Identity = 77/120 (64.17%), Postives = 97/120 (80.83%), Query Frame = 1 Query: 1 QEDELLKEVYTAIRAADERKAGDVRCLKVSHLTVMTEYMIILVGTSRPQNQAIAANIIELMEEKHERICKQQGTPSSGWILLDYGDLIVHIMTPKSRAYYDLDGYWANGEDVDLSQIIKP 360 ++D L EV TA++AADERKAG++ ++V+ LTVMTE+M++L G SRPQNQAIA NI E MEE H+R K QG P SGWILLDYGD+IVHIMTPKSR+YYDL+ +W+NGE V L ++KP Sbjct: 33 EDDPTLPEVLTAVKAADERKAGNIVAIRVATLTVMTEFMVVLEGNSRPQNQAIAQNIEEKMEEMHQRKTKSQGAPESGWILLDYGDIIVHIMTPKSRSYYDLESFWSNGERVPLDGVLKP 152
BLAST of mRNA_C-australica_Contig_1013.4.1 vs. uniprot
Match: A0A835YP01_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP01_9STRA) HSP 1 Score: 165 bits (418), Expect = 6.230e-50 Identity = 76/119 (63.87%), Postives = 96/119 (80.67%), Query Frame = 1 Query: 4 EDELLKEVYTAIRAADERKAGDVRCLKVSHLTVMTEYMIILVGTSRPQNQAIAANIIELMEEKHERICKQQGTPSSGWILLDYGDLIVHIMTPKSRAYYDLDGYWANGEDVDLSQIIKP 360 +D L E+ T RAAD RKA ++ L+V+ LT++T +M++L GTSRPQNQAIAA+IIE MEE+H R+ KQQGTP SGWILLDYGD+I+HIMTPKSRAYYDL+ +W GE VDLS ++ P Sbjct: 33 QDPGLGEILTIARAADARKAQNINALRVAQLTIVTNFMVVLEGTSRPQNQAIAASIIEAMEEEHGRVTKQQGTPDSGWILLDYGDIIIHIMTPKSRAYYDLETFWREGERVDLSGVLVP 151
BLAST of mRNA_C-australica_Contig_1013.4.1 vs. uniprot
Match: A0A6H5KVM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVM5_9PHAE) HSP 1 Score: 167 bits (424), Expect = 1.200e-49 Identity = 77/120 (64.17%), Postives = 97/120 (80.83%), Query Frame = 1 Query: 1 QEDELLKEVYTAIRAADERKAGDVRCLKVSHLTVMTEYMIILVGTSRPQNQAIAANIIELMEEKHERICKQQGTPSSGWILLDYGDLIVHIMTPKSRAYYDLDGYWANGEDVDLSQIIKP 360 ++D L EV TA++AADERKAG++ ++V+ LTVMTE+M++L G SRPQNQAIA NI E MEE H+R QGTP SGWILLDYGD+IVHIMTPKSR+YYDL+ +W+NGE V L ++KP Sbjct: 131 EDDPTLPEVLTAVKAADERKAGNIVAIRVATLTVMTEFMVVLEGNSRPQNQAIAQNIEEKMEEMHQRKTNSQGTPESGWILLDYGDIIVHIMTPKSRSYYDLESFWSNGERVPLDGVLKP 250
BLAST of mRNA_C-australica_Contig_1013.4.1 vs. uniprot
Match: A0A7S2Y0E5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0E5_9STRA) HSP 1 Score: 137 bits (345), Expect = 2.680e-38 Identity = 62/120 (51.67%), Postives = 89/120 (74.17%), Query Frame = 1 Query: 7 DELLKEVYTAIRAADERKAGDVRCLKVSHLTVMTEYMIILVGTSRPQNQAIAANIIELMEEKHERICKQ--QGTPSSGWILLDYGDLIVHIMTPKSRAYYDLDGYWANGEDVDLSQIIKP 360 D L EV T ++A D RKA +++ ++VS LTV +++++ GTSRPQNQAI+ I++ MEE H ++ +GT SGW+LLDYGD++VHIMTPKSRA+YD++G+W GE VDLS ++ P Sbjct: 83 DPTLPEVLTIVKAGDMRKAQNIKAIRVSSLTVQMSFLVVMSGTSRPQNQAISRAIVDDMEEVHGLRPREPHEGTADSGWMLLDYGDIVVHIMTPKSRAFYDIEGFWGKGEPVDLSGVVLP 202
BLAST of mRNA_C-australica_Contig_1013.4.1 vs. uniprot
Match: A0A7S0CC84_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CC84_9STRA) HSP 1 Score: 136 bits (342), Expect = 1.260e-37 Identity = 64/121 (52.89%), Postives = 92/121 (76.03%), Query Frame = 1 Query: 7 DELLKEVYTAIRAADERKAGDVRCLKVSHLTVMTEYMIILVGTSRPQNQAIAANIIELMEEKHE-----RICKQQGTPSSGWILLDYGDLIVHIMTPKSRAYYDLDGYWANGEDVDLSQII 354 D+L + T ++AADERKA ++R ++VS LT +T ++I+L G SRPQNQAIAA+I++ +EE H+ K +GT SGWIL+DYGD++VHIMTPKSR +YDL+G W +GE++DLS ++ Sbjct: 88 DDLAPFIRTIVKAADERKADNIRAIRVSKLTAVTCFIIVLSGNSRPQNQAIAASILDDVEEFHDGRKPRNDGKPEGTADSGWILVDYGDVMVHIMTPKSRLFYDLEGQWKSGEEMDLSDVL 208
BLAST of mRNA_C-australica_Contig_1013.4.1 vs. uniprot
Match: A0A7S0QR45_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QR45_9CRYP) HSP 1 Score: 134 bits (336), Expect = 1.180e-36 Identity = 61/119 (51.26%), Postives = 87/119 (73.11%), Query Frame = 1 Query: 4 EDELLKEVYTAIRAADERKAGDVRCLKVSHLTVMTEYMIILVGTSRPQNQAIAANIIELMEEKHERICKQQGTPSSGWILLDYGDLIVHIMTPKSRAYYDLDGYWANGEDVDLSQIIKP 360 ED L + IRAAD+RKA + ++V+HLT TE+ + + G+SRP QAI+ANI ++M EKH+R K QGTP SGWILLDYG++IV++MTP +R +YDL+G W +GE + + I++P Sbjct: 99 EDPSLPMIEDIIRAADDRKAQSIWAVRVAHLTYSTEFFVNVQGSSRPMLQAISANIEDMMMEKHQRSIKWQGTPDSGWILLDYGEVIVNVMTPAARDFYDLEGLWRHGERIPMDHILQP 217
BLAST of mRNA_C-australica_Contig_1013.4.1 vs. uniprot
Match: L1JY76_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JY76_GUITC) HSP 1 Score: 125 bits (315), Expect = 8.040e-34 Identity = 63/119 (52.94%), Postives = 80/119 (67.23%), Query Frame = 1 Query: 4 EDELLKEVYTAIRAADERKAGDVRCLKVSHLTVMTEYMIILVGTSRPQNQAIAANIIELMEEKHERICKQQGTPSSGWILLDYGDLIVHIMTPKSRAYYDLDGYWANGEDVDLSQIIKP 360 ED L V IRA DERKA + +VSHLT TE+ I G+SRP QAIAAN+ ++M EK+ R K QG P SGWILLDYG++IV+IMT +R +YDL+ +W NGE V L ++ P Sbjct: 61 EDPSLPLVQDIIRAMDERKAESIWAARVSHLTYSTEFFINCQGSSRPMLQAIAANVEDIMNEKYGREIKWQGNPDSGWILLDYGEVIVNIMTAAAREFYDLEEHWQNGELVPLEDLVTP 179
BLAST of mRNA_C-australica_Contig_1013.4.1 vs. uniprot
Match: A0A7S2C8T3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C8T3_9STRA) HSP 1 Score: 125 bits (313), Expect = 1.610e-33 Identity = 62/122 (50.82%), Postives = 86/122 (70.49%), Query Frame = 1 Query: 1 QEDELLKEVYTAIRAADERKAGDVRCLKVSHLTVMTEYMIILVGTSRPQNQAIAANIIELMEEKHERICKQQGTPSSGWILLDYGDLIVHIMTPKSRAYYDLDGYWANGEDVDLSQII-KPD 363 ++D LL V+ +A D+RKA + L+VSHLT TE+ + ++G SRPQN AIAA+I + M+E R C+ G SGWILLDYGD+IV++MTP+SR YY L+ +W GE+VDLS ++ PD Sbjct: 77 EDDSLLPIVHAIAKAGDKRKAEGILALRVSHLTYTTEFFVNMMGNSRPQNNAIAASIQDDMKELG-RSCRIDGNADSGWILLDYGDVIVNVMTPRSREYYRLEEFWEKGEEVDLSAVLLSPD 197
BLAST of mRNA_C-australica_Contig_1013.4.1 vs. uniprot
Match: A0A7R9YBC2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBC2_9STRA) HSP 1 Score: 125 bits (313), Expect = 2.310e-33 Identity = 58/113 (51.33%), Postives = 82/113 (72.57%), Query Frame = 1 Query: 25 VYTAIRAADERKAGDVRCLKVSHLTVMTEYMIILVGTSRPQNQAIAANIIELMEEKHERIC-KQQGTPSSGWILLDYGDLIVHIMTPKSRAYYDLDGYWANGEDVDLSQIIKP 360 V+ +RAAD RKA + V +T +MI+ G SRPQNQAIAA++++ +EE++ R +QGT SGWILLDYGD+IVH+MTPKSRAYYDL+G+W NG+ +++ ++ P Sbjct: 85 VHDIVRAADARKADNPVVYHVESVTPSNSFMIVCSGNSRPQNQAIAAHVVDEVEEQYGRKPDSRQGTAESGWILLDYGDVIVHVMTPKSRAYYDLEGFWKNGKRLEIEHLLLP 197
BLAST of mRNA_C-australica_Contig_1013.4.1 vs. uniprot
Match: A0A7S0VSN1_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VSN1_9CRYP) HSP 1 Score: 125 bits (313), Expect = 9.210e-33 Identity = 62/120 (51.67%), Postives = 79/120 (65.83%), Query Frame = 1 Query: 1 QEDELLKEVYTAIRAADERKAGDVRCLKVSHLTVMTEYMIILVGTSRPQNQAIAANIIELMEEKHERICKQQGTPSSGWILLDYGDLIVHIMTPKSRAYYDLDGYWANGEDVDLSQIIKP 360 +ED L + I AADERK + +VSHLT T + + + GTSRP QAIAAN+ E+M EKH R K QG P SGWILLDYGD+IV+I+T +R YYDL+ W NGE + L ++ P Sbjct: 115 EEDPSLPMIEDIIVAADERKGERIWAARVSHLTFTTSFFVNVEGTSRPMLQAIAANVEEMMLEKHGREIKWQGKPDSGWILLDYGDVIVNILTTAAREYYDLESLWKNGELIPLDHLVVP 234 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1013.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1013.4.1 >prot_C-australica_Contig_1013.4.1 ID=prot_C-australica_Contig_1013.4.1|Name=mRNA_C-australica_Contig_1013.4.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=121bp QEDELLKEVYTAIRAADERKAGDVRCLKVSHLTVMTEYMIILVGTSRPQNback to top mRNA from alignment at C-australica_Contig_1013:16193..17028+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1013.4.1 ID=mRNA_C-australica_Contig_1013.4.1|Name=mRNA_C-australica_Contig_1013.4.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=836bp|location=Sequence derived from alignment at C-australica_Contig_1013:16193..17028+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1013:16193..17028+ >mRNA_C-australica_Contig_1013.4.1 ID=mRNA_C-australica_Contig_1013.4.1|Name=mRNA_C-australica_Contig_1013.4.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=363bp|location=Sequence derived from alignment at C-australica_Contig_1013:16193..17028+ (Chrysoparadoxa australica CS_1217)back to top |