mRNA_C-australica_Contig_1013.2.2 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1013.2.2
Unique NamemRNA_C-australica_Contig_1013.2.2
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1013.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1013contigC-australica_Contig_1013:2776..5002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1387
Hectar predicted targeting categoryother localisation
Exons8
Cds size696
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1013.2.2prot_C-australica_Contig_1013.2.2Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1013 2907..4442 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586747.6289108-UTR-C-australica_Contig_1013:2775..29061682586747.6289108-UTR-C-australica_Contig_1013:2775..2906Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1013 2776..2906 +
1682586747.7401783-UTR-C-australica_Contig_1013:4442..50021682586747.7401783-UTR-C-australica_Contig_1013:4442..5002Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1013 4443..5002 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586747.6407473-CDS-C-australica_Contig_1013:2906..29291682586747.6407473-CDS-C-australica_Contig_1013:2906..2929Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1013 2907..2929 +
1682586747.6550038-CDS-C-australica_Contig_1013:3016..30721682586747.6550038-CDS-C-australica_Contig_1013:3016..3072Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1013 3017..3072 +
1682586747.6681976-CDS-C-australica_Contig_1013:3181..32601682586747.6681976-CDS-C-australica_Contig_1013:3181..3260Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1013 3182..3260 +
1682586747.6848133-CDS-C-australica_Contig_1013:3331..34691682586747.6848133-CDS-C-australica_Contig_1013:3331..3469Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1013 3332..3469 +
1682586747.6966326-CDS-C-australica_Contig_1013:3590..37231682586747.6966326-CDS-C-australica_Contig_1013:3590..3723Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1013 3591..3723 +
1682586747.708557-CDS-C-australica_Contig_1013:3810..38751682586747.708557-CDS-C-australica_Contig_1013:3810..3875Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1013 3811..3875 +
1682586747.7190764-CDS-C-australica_Contig_1013:4029..41321682586747.7190764-CDS-C-australica_Contig_1013:4029..4132Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1013 4030..4132 +
1682586747.7323918-CDS-C-australica_Contig_1013:4343..44421682586747.7323918-CDS-C-australica_Contig_1013:4343..4442Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1013 4344..4442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1013.2.2

>prot_C-australica_Contig_1013.2.2 ID=prot_C-australica_Contig_1013.2.2|Name=mRNA_C-australica_Contig_1013.2.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=232bp
MEVFDRASINRENTRCPEDSYGTSPQDVPTKKEYTPVAWRAGELYHVKLD
ERSSHRTVSNATIGTAALSLSQSNSFSSAASEEDLSEEEFSDGALATDGA
RSYWAPLQVKPSPKLGGDDPLPKFFSLSSSEDDEESRKEKMLQSDKELMA
PACKVRRPVVQLQPSGLKNDKQRHPVSSMVVSDNLSQSLGRQIGGFAAKL
VSCWWCTHGMEGRLYEDDHGHARLSLQQQLQ*
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mRNA from alignment at C-australica_Contig_1013:2776..5002+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1013.2.2 ID=mRNA_C-australica_Contig_1013.2.2|Name=mRNA_C-australica_Contig_1013.2.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2227bp|location=Sequence derived from alignment at C-australica_Contig_1013:2776..5002+ (Chrysoparadoxa australica CS_1217)
CTCCATTGTTTCTTATAACGAAAGCACACTTTTAGAGAAACCATAAAGTA
GAGACACACACGCCGCATAAGATACACTTGGCGCAGCACAATCACACAAT
CACGTTGGAAGGCTGGGCTGCCTAGTTCAATATGGAGGTTTTCGATAGAG
CGAGGTGACCAGACCCTCCTCCTACTTCCCCTCCTGTCCTCCCTTGGGTT
GGGCGATTTCCACGGCTAAGCAAACCTCCCAACCTAAGCAGCATCAATAG
GGAGAACACTAGATGTCCAGAAGATAGCTACGGCACAAGCCCTCAAGGTA
AGAGCGTGCCCTCCCTCCTGTAGGGTACCTAGACATCTGGGGCAACACCA
TTGCGCACTCGCTGCTCATTTTGTATTTCATGGACTCCTGTTTTCTCCCA
TGACAGATGTCCCAACGAAGAAAGAGTACACTCCTGTGGCCTGGAGAGCT
GGAGAGCTGTACCACGTGAAGCTGGACGAAAGAAGGTGATCCCTCCTCTC
TCTCTCTCTCTCTCTCTCTCTAACAGGTGACAGCTGACAGGTCGCTTCCC
TCACAGTTCACACAGGACTGTAAGTAATGCCACTATAGGCACCGCTGCAC
TGAGCCTGAGCCAGTCCAACTCATTCTCAAGCGCTGCGTCTGAGGAGGAC
TTGTCTGAGGAGGAGTTTTCAGATGGGGCGCTTGCTACCGATGGGTAAGG
CTTCACCTTGCATGGTCTCTATCCTAACTCTAACCCTAACTCTAACCCTT
GCCCCTCATACGAGCTGAACTCTCCAGGACTGCCCTTACCACCATAACCT
TTTGCTCCAACTCAGGGCCAGGTCCTATTGGGCACCGCTGCAGGTGAAGC
CCTCCCCAAAGCTAGGCGGGGATGATCCCCTGCCGAAGTTTTTTTCGTTG
AGCTCCAGTGAGGATGACGAAGAAAGCAGAAAGGAGAAGATGTTGCAGGT
GGGGCCATCTTGCTTGGCACCTTGCTGCAGTTTCCTTTGGTCCTTTGGTC
TGCTGATGCACTCACCTAAGCACCTCTAAACTCAGTCCGATAAAGAGCTC
ATGGCACCAGCATGCAAGGTTCGGCGGCCCGTGGTACAGCTGCAGCCAAG
GTGCTCCCTCCCACACATCTATTTGCAAATGTCTATTTCCTCCACATTAG
CAGTCGCTTTCAAGTTCACCGTATATTTAGAAAGCTCACTAGCTGGCCAG
CTATACCAACGAACCAAAACTGATAAAACTGGACCCCTTGCTCTTATTGT
CAAGTGGGCTTAAGAATGACAAGCAACGGCATCCTGTTTCTTCCATGGTG
GTGAGCGACAACTTGAGCCAATCTCTTGGGCGCCAGATAGGAGGCTTTGC
TGCAAAGGTACAAGCGCTCTTGGTTTCACGCCTTCCTTAGTCTTTAGCCC
TAGCTTCAGCAGCCTCTTGGTGCACTCCCGAAGCAGTGGTTTAGCGGCTG
CCAGCACCCAATGATGCGCGAAATCTCTCTCTTCACAAGCGAGTTATTAA
ATTTAGTTCTCTTTTTCTCACCTGCAAGTAGAGCATGAGCAATTTACCTG
AGCATCCGTCCTGTGCAGTTAGTCTCATGCTGGTGGTGCACTCATGGCAT
GGAGGGGAGGCTGTACGAAGATGACCACGGGCATGCCCGTTTGTCCCTCC
AGCAACAGTTACAGTGAGGGCAAGCATGTCTGGGTGACTTGAGAGGCATG
ATCGTGAGTGACTTGCCTCCTTATTGCTTACTGCTTACTGCTTGTACTAA
GTCTTTTGGTGCTTACAGCTCACAGCCCTTTACCCTCCTTACCTCACGCA
ATGAGTGCTCTTACTCACACGCAATGAGTGCTCTTACATATATAAGTATC
CATATAAGCCAGGCGCCGGTTGTGACCAGATTCTCCGCCCTTTGAAACAG
GCTGCTAGAGTTTGATGTAGGTATGGAAGGATGGGGGAAGCCTCGGTATT
TATATTCCTAGGTGTGAGGAAGGTCTTGCTGGGCCTTTTAATAGAGCACC
GTAGATTCTTTGGGGCATAGACAAGAGAACAGATACAAGAACAGAGCTTT
AGGAAAAGATGTAGAGGGGTTGGCATAGATTAGGGGGAGCAGCATTTCTT
TGAAGGTTTTCTGGGTGCTAAAGGCTAGGGGAGATGCAGCGATCGACTTC
ATAACTTTTGGAGATGCAGTGACCGACTTTCATAATTTTTGTTTGGGAAC
CTCCATGCTCTGAGCGCGAGGTTCCAC
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Coding sequence (CDS) from alignment at C-australica_Contig_1013:2776..5002+

>mRNA_C-australica_Contig_1013.2.2 ID=mRNA_C-australica_Contig_1013.2.2|Name=mRNA_C-australica_Contig_1013.2.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=696bp|location=Sequence derived from alignment at C-australica_Contig_1013:2776..5002+ (Chrysoparadoxa australica CS_1217)
ATGGAGGTTTTCGATAGAGCGAGCATCAATAGGGAGAACACTAGATGTCC
AGAAGATAGCTACGGCACAAGCCCTCAAGATGTCCCAACGAAGAAAGAGT
ACACTCCTGTGGCCTGGAGAGCTGGAGAGCTGTACCACGTGAAGCTGGAC
GAAAGAAGTTCACACAGGACTGTAAGTAATGCCACTATAGGCACCGCTGC
ACTGAGCCTGAGCCAGTCCAACTCATTCTCAAGCGCTGCGTCTGAGGAGG
ACTTGTCTGAGGAGGAGTTTTCAGATGGGGCGCTTGCTACCGATGGGGCC
AGGTCCTATTGGGCACCGCTGCAGGTGAAGCCCTCCCCAAAGCTAGGCGG
GGATGATCCCCTGCCGAAGTTTTTTTCGTTGAGCTCCAGTGAGGATGACG
AAGAAAGCAGAAAGGAGAAGATGTTGCAGTCCGATAAAGAGCTCATGGCA
CCAGCATGCAAGGTTCGGCGGCCCGTGGTACAGCTGCAGCCAAGTGGGCT
TAAGAATGACAAGCAACGGCATCCTGTTTCTTCCATGGTGGTGAGCGACA
ACTTGAGCCAATCTCTTGGGCGCCAGATAGGAGGCTTTGCTGCAAAGTTA
GTCTCATGCTGGTGGTGCACTCATGGCATGGAGGGGAGGCTGTACGAAGA
TGACCACGGGCATGCCCGTTTGTCCCTCCAGCAACAGTTACAGTGA
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