mRNA_C-australica_Contig_10123.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_10123.1.1 vs. uniprot
Match: A0A0B3S1U0_9RHOB (Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein n=15 Tax=Rhodobacterales TaxID=204455 RepID=A0A0B3S1U0_9RHOB) HSP 1 Score: 370 bits (949), Expect = 9.720e-123 Identity = 201/216 (93.06%), Postives = 212/216 (98.15%), Query Frame = 1 Query: 1 MRGFLKLLARNRLALAGGIVLLLVVLLALVTPLLPLAEPNVTNTSARFQRPFSDGALLGTDHLGRDLLSRLLWGTRLSLAVGFAAAIVAATLGAAIGIIAGYYGGRTDNLIMRGVDMLMAFPYILLALAIVAALGPGLFNALIAVAAVNVPFFARNIRGITVGIAHKEFVDAARLAGLSNTKIILTEILPNVVPVIVIAMSTTIGWMILETAGLSF 648
M FLKLLARNRLALAGGIVL VVLLAL+TPLLPLAEPNVTNT+ARFQ+PF++GALLGTDHLGRDLLSRL+WGTRLSLAVGFAAA+VAATLGAAIGI+AG+YGGRTDNLIMRGVDMLMAFPYILLALAIVAALGPGLFNALIAVAAVNVPFFARNIRGITVGIAHKEFVDAARLAGLSNT+IILTEILPNV+PVIVIAMSTTIGWMILETAGLSF
Sbjct: 1 MMAFLKLLARNRLALAGGIVLSFVVLLALITPLLPLAEPNVTNTAARFQKPFTEGALLGTDHLGRDLLSRLMWGTRLSLAVGFAAAVVAATLGAAIGIVAGFYGGRTDNLIMRGVDMLMAFPYILLALAIVAALGPGLFNALIAVAAVNVPFFARNIRGITVGIAHKEFVDAARLAGLSNTRIILTEILPNVIPVIVIAMSTTIGWMILETAGLSF 216
BLAST of mRNA_C-australica_Contig_10123.1.1 vs. uniprot
Match: UPI001CCA2468 (dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein n=1 Tax=Celeribacter litoreus TaxID=2876714 RepID=UPI001CCA2468) HSP 1 Score: 358 bits (920), Expect = 2.250e-118 Identity = 195/216 (90.28%), Postives = 210/216 (97.22%), Query Frame = 1 Query: 1 MRGFLKLLARNRLALAGGIVLLLVVLLALVTPLLPLAEPNVTNTSARFQRPFSDGALLGTDHLGRDLLSRLLWGTRLSLAVGFAAAIVAATLGAAIGIIAGYYGGRTDNLIMRGVDMLMAFPYILLALAIVAALGPGLFNALIAVAAVNVPFFARNIRGITVGIAHKEFVDAARLAGLSNTKIILTEILPNVVPVIVIAMSTTIGWMILETAGLSF 648
M FLKLLARNRLALAGG+VL +VVLLA++TPLLPLA+PNVTNT+ARF +PFS+GALLGTDHLGRDLLSRL+WGTRLSLAVGFAAA+VAATLGAAIGIIAGYYGGRTDNLIMRGVD+LMAFPYILLALAIVAALGPGLFNALIAVAAVNVPFFARNIRGITVGIAHKEFVDAA+LAGL++ +IIL EILPNVVPVIVIAMSTTIGWMILETAGLSF
Sbjct: 1 MSAFLKLLARNRLALAGGVVLSVVVLLAIITPLLPLADPNVTNTAARFTKPFSEGALLGTDHLGRDLLSRLMWGTRLSLAVGFAAAVVAATLGAAIGIIAGYYGGRTDNLIMRGVDLLMAFPYILLALAIVAALGPGLFNALIAVAAVNVPFFARNIRGITVGIAHKEFVDAAKLAGLTHRQIILKEILPNVVPVIVIAMSTTIGWMILETAGLSF 216
BLAST of mRNA_C-australica_Contig_10123.1.1 vs. uniprot
Match: A0A2S8S3B1_9RHOB (Peptide/nickel transport system permease protein n=1 Tax=Defluviimonas denitrificans TaxID=404881 RepID=A0A2S8S3B1_9RHOB) HSP 1 Score: 357 bits (916), Expect = 9.000e-118 Identity = 193/216 (89.35%), Postives = 211/216 (97.69%), Query Frame = 1 Query: 1 MRGFLKLLARNRLALAGGIVLLLVVLLALVTPLLPLAEPNVTNTSARFQRPFSDGALLGTDHLGRDLLSRLLWGTRLSLAVGFAAAIVAATLGAAIGIIAGYYGGRTDNLIMRGVDMLMAFPYILLALAIVAALGPGLFNALIAVAAVNVPFFARNIRGITVGIAHKEFVDAARLAGLSNTKIILTEILPNVVPVIVIAMSTTIGWMILETAGLSF 648
M GF +LLARNRLALAGG+VL LV+LLALVTPLLPLA+P+VT+T+ RF+ PFS+GALLGTDHLGRDLLSRLLWGTRLSLAVGFAAAIVAAT+G+AIGI+AG+YGGRTDNLIMRGVDMLMAFPYILLALAIVAALGPGLFNALIAVAAVNVPFFARNIRGITVGIAHKEFVDAARLAGLSNT+II++E+LPNV+PVIVIAMSTTIGWMILETAGLSF
Sbjct: 1 MTGFFQLLARNRLALAGGVVLSLVILLALVTPLLPLADPDVTDTANRFKLPFSEGALLGTDHLGRDLLSRLLWGTRLSLAVGFAAAIVAATIGSAIGIVAGFYGGRTDNLIMRGVDMLMAFPYILLALAIVAALGPGLFNALIAVAAVNVPFFARNIRGITVGIAHKEFVDAARLAGLSNTRIIVSEVLPNVIPVIVIAMSTTIGWMILETAGLSF 216
BLAST of mRNA_C-australica_Contig_10123.1.1 vs. uniprot
Match: A0A7Y7DC09_9RHOB (Dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein n=4 Tax=Rhodobacterales TaxID=204455 RepID=A0A7Y7DC09_9RHOB) HSP 1 Score: 355 bits (911), Expect = 4.810e-117 Identity = 195/216 (90.28%), Postives = 208/216 (96.30%), Query Frame = 1 Query: 1 MRGFLKLLARNRLALAGGIVLLLVVLLALVTPLLPLAEPNVTNTSARFQRPFSDGALLGTDHLGRDLLSRLLWGTRLSLAVGFAAAIVAATLGAAIGIIAGYYGGRTDNLIMRGVDMLMAFPYILLALAIVAALGPGLFNALIAVAAVNVPFFARNIRGITVGIAHKEFVDAARLAGLSNTKIILTEILPNVVPVIVIAMSTTIGWMILETAGLSF 648
M FL LLARNRLALAGGIVLLLVVLLAL+TP+LPLA+P+VTNTS RFQ FSDGA+LGTDHLGRDLLSRL+WGTRLSLAVGFAAAIVAAT+GA IGI+AGYYGGR DN+IMRGVDMLMAFPYILLALAIVAALGPGLFNALIAV+AVNVPFFARNIRGITVGIAHKEFVDAARLAGLSNT+IIL+EILPNV+PVIVIAMSTTIGWMILETAGLSF
Sbjct: 1 MTSFLTLLARNRLALAGGIVLLLVVLLALLTPVLPLADPDVTNTSNRFQPIFSDGAVLGTDHLGRDLLSRLMWGTRLSLAVGFAAAIVAATIGAGIGIVAGYYGGRIDNIIMRGVDMLMAFPYILLALAIVAALGPGLFNALIAVSAVNVPFFARNIRGITVGIAHKEFVDAARLAGLSNTRIILSEILPNVIPVIVIAMSTTIGWMILETAGLSF 216
BLAST of mRNA_C-australica_Contig_10123.1.1 vs. uniprot
Match: UPI0008BFC07F (dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein n=1 Tax=Marinovum algicola TaxID=42444 RepID=UPI0008BFC07F) HSP 1 Score: 355 bits (911), Expect = 5.080e-117 Identity = 200/216 (92.59%), Postives = 207/216 (95.83%), Query Frame = 1 Query: 1 MRGFLKLLARNRLALAGGIVLLLVVLLALVTPLLPLAEPNVTNTSARFQRPFSDGALLGTDHLGRDLLSRLLWGTRLSLAVGFAAAIVAATLGAAIGIIAGYYGGRTDNLIMRGVDMLMAFPYILLALAIVAALGPGLFNALIAVAAVNVPFFARNIRGITVGIAHKEFVDAARLAGLSNTKIILTEILPNVVPVIVIAMSTTIGWMILETAGLSF 648
M GFL LLARNRLALAGGIVLLLV LLALVTPLLPLA+P+VTNTS RF+ FS ALLGTDHLGRDLLSRL+WGTRLSLAVGFAAAIVAATLGAAIGIIAGYYGGRTDN+IMRGVDMLMAFPYILLALAIVAALGPGL NALIAVAAVNVPFFARNIRGITVGIAHKEFVDAARLAGLSNT+IIL+EILPNVVPVIVIAMSTTIGWMILETAGLSF
Sbjct: 1 MTGFLTLLARNRLALAGGIVLLLVGLLALVTPLLPLADPDVTNTSNRFRPIFSPDALLGTDHLGRDLLSRLMWGTRLSLAVGFAAAIVAATLGAAIGIIAGYYGGRTDNVIMRGVDMLMAFPYILLALAIVAALGPGLLNALIAVAAVNVPFFARNIRGITVGIAHKEFVDAARLAGLSNTRIILSEILPNVVPVIVIAMSTTIGWMILETAGLSF 216
BLAST of mRNA_C-australica_Contig_10123.1.1 vs. uniprot
Match: UPI001AEA082C (dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein n=1 Tax=unclassified Ruegeria TaxID=2625375 RepID=UPI001AEA082C) HSP 1 Score: 348 bits (894), Expect = 1.830e-114 Identity = 189/216 (87.50%), Postives = 208/216 (96.30%), Query Frame = 1 Query: 1 MRGFLKLLARNRLALAGGIVLLLVVLLALVTPLLPLAEPNVTNTSARFQRPFSDGALLGTDHLGRDLLSRLLWGTRLSLAVGFAAAIVAATLGAAIGIIAGYYGGRTDNLIMRGVDMLMAFPYILLALAIVAALGPGLFNALIAVAAVNVPFFARNIRGITVGIAHKEFVDAARLAGLSNTKIILTEILPNVVPVIVIAMSTTIGWMILETAGLSF 648
M+ FL LLARNRLAL G +V+ LVVLLALVTPLLPLA+P+VT+T+ RF+RPFS+GALLGTDHLGRDLLSRLLWGTRLSLAVGFAAAI+AATLGAAIGIIAGYYGGRTDN+IMRGVDMLMAFPYILLALAIVAALGPGL NALIAVAAVN+PFFARNIRGITVGIAHKEFVDAARL+G+++ +IILTE+LPNV+PVIVIAMSTTIGWMILETAGLSF
Sbjct: 1 MKNFLMLLARNRLALGGLVVMGLVVLLALVTPLLPLADPDVTDTANRFKRPFSEGALLGTDHLGRDLLSRLLWGTRLSLAVGFAAAIIAATLGAAIGIIAGYYGGRTDNIIMRGVDMLMAFPYILLALAIVAALGPGLMNALIAVAAVNIPFFARNIRGITVGIAHKEFVDAARLSGMTDARIILTEVLPNVIPVIVIAMSTTIGWMILETAGLSF 216
BLAST of mRNA_C-australica_Contig_10123.1.1 vs. uniprot
Match: A0A6L5Z437_9RHOB (ABC transporter permease subunit n=2 Tax=Halovulum marinum TaxID=2662447 RepID=A0A6L5Z437_9RHOB) HSP 1 Score: 348 bits (894), Expect = 1.880e-114 Identity = 187/216 (86.57%), Postives = 206/216 (95.37%), Query Frame = 1 Query: 1 MRGFLKLLARNRLALAGGIVLLLVVLLALVTPLLPLAEPNVTNTSARFQRPFSDGALLGTDHLGRDLLSRLLWGTRLSLAVGFAAAIVAATLGAAIGIIAGYYGGRTDNLIMRGVDMLMAFPYILLALAIVAALGPGLFNALIAVAAVNVPFFARNIRGITVGIAHKEFVDAARLAGLSNTKIILTEILPNVVPVIVIAMSTTIGWMILETAGLSF 648
M FLKLLARNRLAL GGI+LLLVV LALVTPLLPLA+P+VT T+ RF+RPFSDGALLGTDHLGRDLLSRLLWGTRLSLAVGFAAA+VAA GAAIG++AG++GGRTDNLIMRGVDMLMAFPYILLALAIVAALGPGLFNALIAVAAVN+PFFARNIRG+TVGIAH+EFVDAARL+G+S +IILTEI+PNV+PVIVIAMSTT+GWMILETAGLSF
Sbjct: 1 MSAFLKLLARNRLALVGGIILLLVVALALVTPLLPLADPDVTRTADRFKRPFSDGALLGTDHLGRDLLSRLLWGTRLSLAVGFAAALVAAVGGAAIGVVAGFFGGRTDNLIMRGVDMLMAFPYILLALAIVAALGPGLFNALIAVAAVNIPFFARNIRGVTVGIAHREFVDAARLSGMSTARIILTEIVPNVIPVIVIAMSTTVGWMILETAGLSF 216
BLAST of mRNA_C-australica_Contig_10123.1.1 vs. uniprot
Match: A0A520ZPE3_9RHOB (ABC transporter permease (Fragment) n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A520ZPE3_9RHOB) HSP 1 Score: 335 bits (858), Expect = 5.270e-113 Identity = 188/216 (87.04%), Postives = 196/216 (90.74%), Query Frame = 1 Query: 1 MRGFLKLLARNRLALAGGIVLLLVVLLALVTPLLPLAEPNVTNTSARFQRPFSDGALLGTDHLGRDLLSRLLWGTRLSLAVGFAAAIVAATLGAAIGIIAGYYGGRTDNLIMRGVDMLMAFPYILLALAIVAALGPGLFNALIAVAAVNVPFFARNIRGITVGIAHKEFVDAARLAGLSNTKIILTEILPNVVPVIVIAMSTTIGWMILETAGLSF 648
M F LLARNRLALAGGIVLL VVLLALVTPLLPLA P+VTNTS RFQ P S+ ALLGTDHLGRDLLSRL+WGTRLSLAVGFAAAIV +AGYYGGRTDN+IMRGVDMLMAFPYILLALAIVAALGPGLFNALIAVAAVNVPFFARNIRGITVGIA+KEFVDAARLAGLSNT+IIL+EILPNVVPVIVIAMSTTIGWMILETAGLSF
Sbjct: 1 MTAFFTLLARNRLALAGGIVLLFVVLLALVTPLLPLANPDVTNTSNRFQPPLSESALLGTDHLGRDLLSRLMWGTRLSLAVGFAAAIVXXXXXXXXXXVAGYYGGRTDNIIMRGVDMLMAFPYILLALAIVAALGPGLFNALIAVAAVNVPFFARNIRGITVGIANKEFVDAARLAGLSNTRIILSEILPNVVPVIVIAMSTTIGWMILETAGLSF 216
BLAST of mRNA_C-australica_Contig_10123.1.1 vs. uniprot
Match: UPI001CD299C7 (dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein n=1 Tax=Seohaeicola saemankumensis TaxID=481181 RepID=UPI001CD299C7) HSP 1 Score: 344 bits (883), Expect = 8.000e-113 Identity = 184/216 (85.19%), Postives = 201/216 (93.06%), Query Frame = 1 Query: 1 MRGFLKLLARNRLALAGGIVLLLVVLLALVTPLLPLAEPNVTNTSARFQRPFSDGALLGTDHLGRDLLSRLLWGTRLSLAVGFAAAIVAATLGAAIGIIAGYYGGRTDNLIMRGVDMLMAFPYILLALAIVAALGPGLFNALIAVAAVNVPFFARNIRGITVGIAHKEFVDAARLAGLSNTKIILTEILPNVVPVIVIAMSTTIGWMILETAGLSF 648
M GFL LLARNRLALAG +V++ VVLLALVTPLLPLA P+ TNT+ RFQRPF ALLGTDHLGRDLLSRLLWGTRLSLAVGF AA+ AATLGA IGIIAGYYGGRTDN+IMRGVDMLMAFPYILLALAIVAALGPGL NALIAVAAVN+PFFARNIRG+TVGIAHKEFVDAARL+GLSN +II++E+LPNV+PV+V+AMSTTIGWMILETAGLSF
Sbjct: 1 MSGFLSLLARNRLALAGAVVIVTVVLLALVTPLLPLANPDATNTAIRFQRPFQGEALLGTDHLGRDLLSRLLWGTRLSLAVGFTAAVAAATLGATIGIIAGYYGGRTDNIIMRGVDMLMAFPYILLALAIVAALGPGLMNALIAVAAVNIPFFARNIRGVTVGIAHKEFVDAARLSGLSNARIIVSEVLPNVIPVVVVAMSTTIGWMILETAGLSF 216
BLAST of mRNA_C-australica_Contig_10123.1.1 vs. uniprot
Match: A0A254R5M3_9RHOB (Peptide ABC transporter permease n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A254R5M3_9RHOB) HSP 1 Score: 343 bits (879), Expect = 3.280e-112 Identity = 186/216 (86.11%), Postives = 202/216 (93.52%), Query Frame = 1 Query: 1 MRGFLKLLARNRLALAGGIVLLLVVLLALVTPLLPLAEPNVTNTSARFQRPFSDGALLGTDHLGRDLLSRLLWGTRLSLAVGFAAAIVAATLGAAIGIIAGYYGGRTDNLIMRGVDMLMAFPYILLALAIVAALGPGLFNALIAVAAVNVPFFARNIRGITVGIAHKEFVDAARLAGLSNTKIILTEILPNVVPVIVIAMSTTIGWMILETAGLSF 648
M+ F +LL RNRLA AGG+ L +VVLLAL+TP+LPL EPNVTNT+ RF +PFS+G LLGTDHLGRD+LSRLLWGTRLSLAVGFAAAI AA GAAIGI+AGY+GGRTDN+IMRGVDMLMAFPYILLALAIVAALGPGL NALIAVAAVNVPFFARNIRG+TVGIAHKEFVDAARLAGLSNT+IILTEILPNV+PVIVIAMSTTIGWMILETAGLSF
Sbjct: 1 MKKFFQLLIRNRLAAAGGVALSIVVLLALLTPILPLQEPNVTNTANRFVKPFSEGHLLGTDHLGRDMLSRLLWGTRLSLAVGFAAAIFAAFFGAAIGIVAGYFGGRTDNIIMRGVDMLMAFPYILLALAIVAALGPGLVNALIAVAAVNVPFFARNIRGVTVGIAHKEFVDAARLAGLSNTRIILTEILPNVIPVIVIAMSTTIGWMILETAGLSF 216 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10123.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10123.1.1 >prot_C-australica_Contig_10123.1.1 ID=prot_C-australica_Contig_10123.1.1|Name=mRNA_C-australica_Contig_10123.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=216bp MRGFLKLLARNRLALAGGIVLLLVVLLALVTPLLPLAEPNVTNTSARFQRback to top mRNA from alignment at C-australica_Contig_10123:189..836+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10123.1.1 ID=mRNA_C-australica_Contig_10123.1.1|Name=mRNA_C-australica_Contig_10123.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=648bp|location=Sequence derived from alignment at C-australica_Contig_10123:189..836+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10123:189..836+ >mRNA_C-australica_Contig_10123.1.1 ID=mRNA_C-australica_Contig_10123.1.1|Name=mRNA_C-australica_Contig_10123.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=648bp|location=Sequence derived from alignment at C-australica_Contig_10123:189..836+ (Chrysoparadoxa australica CS_1217)back to top |