mRNA_C-australica_Contig_10122.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10122.1.1
Unique NamemRNA_C-australica_Contig_10122.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10122.1.1 vs. uniprot
Match: A0A1B6YD87_9BACT (Uncharacterized protein n=5 Tax=unclassified Balneola TaxID=2615059 RepID=A0A1B6YD87_9BACT)

HSP 1 Score: 215 bits (548), Expect = 2.750e-63
Identity = 104/110 (94.55%), Postives = 106/110 (96.36%), Query Frame = 1
Query:   49 IVNAQSVNIGKGSYSTALPAAAVGPQNVHGQNLSPKVSSDFFKPIQTNDFWSRLIFPFFDDAHSSVLYAHPLNAKAISSGLQIGYTTNSFLTGGDYIYPFSPQLRVGVDG 378
            +VNAQSVNIG+GSYSTALPAAAVGPQNVHGQNLSPKVSSDF KPIQTNDFWS LIFPFFDDAHS VLYAHPLNAKAISSGLQIGYTTNSFL GGDYIYPFSPQLRVGVDG
Sbjct:    1 MVNAQSVNIGEGSYSTALPAAAVGPQNVHGQNLSPKVSSDFTKPIQTNDFWSSLIFPFFDDAHSGVLYAHPLNAKAISSGLQIGYTTNSFLAGGDYIYPFSPQLRVGVDG 110          
BLAST of mRNA_C-australica_Contig_10122.1.1 vs. uniprot
Match: A0A7Y2GAQ7_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Rhodothermales bacterium TaxID=2306054 RepID=A0A7Y2GAQ7_9BACT)

HSP 1 Score: 153 bits (386), Expect = 1.620e-43
Identity = 68/108 (62.96%), Postives = 86/108 (79.63%), Query Frame = 1
Query:   55 NAQSVNIGKGSYSTALPAAAVGPQNVHGQNLSPKVSSDFFKPIQTNDFWSRLIFPFFDDAHSSVLYAHPLNAKAISSGLQIGYTTNSFLTGGDYIYPFSPQLRVGVDG 378
            + Q+V +G GSYST+LP+ AVGPQN  GQ++ PKVSS F  P+Q+NDFWS LI+PFF D HS+VLYAHPLN KA+S+GLQ+GYT++      DY+YPFS QL VGV+G
Sbjct:   23 DGQTVTVGSGSYSTSLPSGAVGPQNSSGQSIGPKVSSAFSLPVQSNDFWSSLIYPFFGDPHSNVLYAHPLNVKAVSTGLQVGYTSDHIFAANDYLYPFSHQLTVGVNG 130          
BLAST of mRNA_C-australica_Contig_10122.1.1 vs. uniprot
Match: A0A351C924_9BACT (Glycoside hydrolase (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A351C924_9BACT)

HSP 1 Score: 151 bits (381), Expect = 3.580e-43
Identity = 73/126 (57.94%), Postives = 95/126 (75.40%), Query Frame = 1
Query:    1 RFTTVFFLVSFSIINSIVNA--QSVNIGKGSYSTALPAAAVGPQNVHGQNLSPKVSSDFFKPIQTNDFWSRLIFPFFDDAHSSVLYAHPLNAKAISSGLQIGYTTNSFLTGGDYIYPFSPQLRVGV 372
            RF T+ +L    +  S  NA  QSV++G GSYST+LP+ AVGPQ  +GQN+SPKVSS+F +PIQTND+WS LI+PF+ D HS+VLYAHPLN +A SSGL++G+T N      DY+YPF+  LRVG+
Sbjct:    3 RFRTLLYLFLILMWCSTPNAFGQSVDVGAGSYSTSLPSGAVGPQKANGQNISPKVSSNFAQPIQTNDWWSSLIYPFYGDQHSNVLYAHPLNVRATSSGLEMGHTQNHVFAANDYLYPFTADLRVGM 128          
BLAST of mRNA_C-australica_Contig_10122.1.1 vs. uniprot
Match: A0A368D4R9_9BACT (Glycoside hydrolase (Fragment) n=1 Tax=Rhodothermaeota bacterium MED-G64 TaxID=2164156 RepID=A0A368D4R9_9BACT)

HSP 1 Score: 141 bits (356), Expect = 4.280e-40
Identity = 62/113 (54.87%), Postives = 88/113 (77.88%), Query Frame = 1
Query:   46 SIVNAQS--VNIGKGSYSTALPAAAVGPQNVHGQNLSPKVSSDFFKPIQTNDFWSRLIFPFFDDAHSSVLYAHPLNAKAISSGLQIGYTTNSFLTGGDYIYPFSPQLRVGVDG 378
            S V AQ+  V++G+GSYST LP  AVGPQ  +G+ + PK+S  F +P+QTNDFWS L+FPFF++ HS+V++AHPLN KA+S GL+IG++ N  L   DY+YP++PQ+ VG++G
Sbjct:   11 SPVQAQALVVSVGEGSYSTQLPFGAVGPQKANGEAVLPKISPTFSQPVQTNDFWSSLLFPFFNNPHSNVIHAHPLNVKAVSQGLEIGHSPNHVLAASDYVYPYTPQITVGIEG 123          
BLAST of mRNA_C-australica_Contig_10122.1.1 vs. uniprot
Match: A0A7Y1ZRZ9_9BACT (Glyco_hydro81C domain-containing protein (Fragment) n=1 Tax=Rhodothermales bacterium TaxID=2306054 RepID=A0A7Y1ZRZ9_9BACT)

HSP 1 Score: 147 bits (372), Expect = 5.050e-40
Identity = 65/114 (57.02%), Postives = 87/114 (76.32%), Query Frame = 1
Query:   37 IINSIVNAQSVNIGKGSYSTALPAAAVGPQNVHGQNLSPKVSSDFFKPIQTNDFWSRLIFPFFDDAHSSVLYAHPLNAKAISSGLQIGYTTNSFLTGGDYIYPFSPQLRVGVDG 378
            ++ + V+ Q+VN+G+GSYST+LPA  +GPQN  GQN+ PKV+S F +P Q+NDFWS LI+PFF   HS+VLYAHPLN KA+ +GLQ+GYT++      DY+YPF  Q+ VGV G
Sbjct:    5 VVATPVSGQTVNVGQGSYSTSLPAGEIGPQNSSGQNVFPKVASGFSQPAQSNDFWSSLIYPFFGSPHSNVLYAHPLNVKAVDTGLQMGYTSDHVFAAADYLYPFFHQITVGVSG 118          
BLAST of mRNA_C-australica_Contig_10122.1.1 vs. uniprot
Match: A0A7Y2E6H3_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Eisenbacteria bacterium TaxID=2212470 RepID=A0A7Y2E6H3_9BACT)

HSP 1 Score: 142 bits (357), Expect = 2.040e-39
Identity = 67/116 (57.76%), Postives = 83/116 (71.55%), Query Frame = 1
Query:   31 FSIINSIVNAQSVNIGKGSYSTALPAAAVGPQNVHGQNLSPKVSSDFFKPIQTNDFWSRLIFPFFDDAHSSVLYAHPLNAKAISSGLQIGYTTNSFLTGGDYIYPFSPQLRVGVDG 378
            F++  S   AQ VN+G GSYST LP   VGPQN  GQN+SPKVS  F  P+Q+NDFWS LI+PF+ + HS+VLYAHPL  KAI++GLQIG+T        DY++P+S QL VGV G
Sbjct:   16 FAVATSPAYAQPVNVGLGSYSTTLPPGEVGPQNSSGQNISPKVSGSFSLPVQSNDFWSSLIYPFYSNPHSNVLYAHPLMVKAINTGLQIGHTPTHVFAANDYLFPWSLQLTVGVVG 131          
BLAST of mRNA_C-australica_Contig_10122.1.1 vs. uniprot
Match: A0A358R309_9BACT (Glyco_hydro81C domain-containing protein (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A358R309_9BACT)

HSP 1 Score: 142 bits (357), Expect = 7.800e-38
Identity = 59/107 (55.14%), Postives = 84/107 (78.50%), Query Frame = 1
Query:   58 AQSVNIGKGSYSTALPAAAVGPQNVHGQNLSPKVSSDFFKPIQTNDFWSRLIFPFFDDAHSSVLYAHPLNAKAISSGLQIGYTTNSFLTGGDYIYPFSPQLRVGVDG 378
            AQ V++G+GSYST LP  AVGPQ  +G+ + PK+S  F +P+QTNDFWS L+FPFF++ HS+V++AHPLN KA+S GL+IG++    L   DY+YP++PQ+ VG++G
Sbjct:   17 AQIVSVGEGSYSTQLPVGAVGPQKANGEAVLPKISPTFSQPVQTNDFWSSLLFPFFNNPHSNVIHAHPLNVKAVSQGLEIGHSPTHVLAASDYVYPYTPQITVGIEG 123          
BLAST of mRNA_C-australica_Contig_10122.1.1 vs. uniprot
Match: A0A3M8G2K9_9BACT (Carbohydrate-binding protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3M8G2K9_9BACT)

HSP 1 Score: 142 bits (358), Expect = 8.040e-37
Identity = 67/119 (56.30%), Postives = 85/119 (71.43%), Query Frame = 1
Query:   22 LVSFSIINSIVNAQSVNIGKGSYSTALPAAAVGPQNVHGQNLSPKVSSDFFKPIQTNDFWSRLIFPFFDDAHSSVLYAHPLNAKAISSGLQIGYTTNSFLTGGDYIYPFSPQLRVGVDG 378
            L++F I +  + AQ V +G GSY+T+LPA    PQNV+GQN+SP+++  F +PIQTNDFWS LIFPFF DAHS  LYAHP+   A + GLQIGYT +      DY+YPFS QL V V+G
Sbjct:   19 LLAFLIPHQHIKAQQVTVGAGSYTTSLPADVDPPQNVNGQNISPRIADGFNQPIQTNDFWSSLIFPFFGDAHSPTLYAHPILVDASNDGLQIGYTIDPVFAAQDYLYPFSAQLTVSVEG 137          
BLAST of mRNA_C-australica_Contig_10122.1.1 vs. uniprot
Match: A0A3R7R8F1_9BACT (T9SS C-terminal target domain-containing protein n=1 Tax=Rhodothermaceae bacterium TMED105 TaxID=1986665 RepID=A0A3R7R8F1_9BACT)

HSP 1 Score: 142 bits (357), Expect = 1.030e-36
Identity = 59/107 (55.14%), Postives = 84/107 (78.50%), Query Frame = 1
Query:   58 AQSVNIGKGSYSTALPAAAVGPQNVHGQNLSPKVSSDFFKPIQTNDFWSRLIFPFFDDAHSSVLYAHPLNAKAISSGLQIGYTTNSFLTGGDYIYPFSPQLRVGVDG 378
            AQ V++G+GSYST LP  AVGPQ  +G+ + PK+S  F +P+QTNDFWS L+FPFF++ HS+V++AHPLN KA+S GL+IG++    L   DY+YP++PQ+ VG++G
Sbjct:   17 AQIVSVGEGSYSTQLPVGAVGPQKANGEAVLPKISPTFSQPVQTNDFWSSLLFPFFNNPHSNVIHAHPLNVKAVSQGLEIGHSPTHVLAASDYVYPYTPQITVGIEG 123          
BLAST of mRNA_C-australica_Contig_10122.1.1 vs. uniprot
Match: A0A2H0FR32_9BACT (Uncharacterized protein n=1 Tax=Ignavibacteriales bacterium CG18_big_fil_WC_8_21_14_2_50_31_20 TaxID=1974047 RepID=A0A2H0FR32_9BACT)

HSP 1 Score: 139 bits (350), Expect = 9.630e-36
Identity = 65/114 (57.02%), Postives = 82/114 (71.93%), Query Frame = 1
Query:   37 IINSIVNAQSVNIGKGSYSTALPAAAVGPQNVHGQNLSPKVSSDFFKPIQTNDFWSRLIFPFFDDAHSSVLYAHPLNAKAISSGLQIGYTTNSFLTGGDYIYPFSPQLRVGVDG 378
            IIN   +AQ++N+GKGSY T LP+  VGPQ   G    PKVSS F KP+QT D+WS LIFPF+ ++ S+V+YAHPLN KAI+SGLQ+GYT        DY++PFS Q+ VGV G
Sbjct:   13 IINFATSAQTINVGKGSYGTTLPSGEVGPQTASGAIAVPKVSSTFQKPVQTCDYWSSLIFPFYGNSFSNVIYAHPLNFKAINSGLQVGYTPTHVFAAQDYLFPFSQQITVGVVG 126          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10122.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1B6YD87_9BACT2.750e-6394.55Uncharacterized protein n=5 Tax=unclassified Balne... [more]
A0A7Y2GAQ7_9BACT1.620e-4362.96Uncharacterized protein (Fragment) n=1 Tax=Rhodoth... [more]
A0A351C924_9BACT3.580e-4357.94Glycoside hydrolase (Fragment) n=1 Tax=Bacteroidet... [more]
A0A368D4R9_9BACT4.280e-4054.87Glycoside hydrolase (Fragment) n=1 Tax=Rhodotherma... [more]
A0A7Y1ZRZ9_9BACT5.050e-4057.02Glyco_hydro81C domain-containing protein (Fragment... [more]
A0A7Y2E6H3_9BACT2.040e-3957.76Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
A0A358R309_9BACT7.800e-3855.14Glyco_hydro81C domain-containing protein (Fragment... [more]
A0A3M8G2K9_9BACT8.040e-3756.30Carbohydrate-binding protein n=1 Tax=Balneola sp. ... [more]
A0A3R7R8F1_9BACT1.030e-3655.14T9SS C-terminal target domain-containing protein n... [more]
A0A2H0FR32_9BACT9.630e-3657.02Uncharacterized protein n=1 Tax=Ignavibacteriales ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10122contigC-australica_Contig_10122:459..836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1906.SFRA_22825
PFAMsCBM_6,Glyco_hydro_81,fn3
Model size378
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.71e-20
EggNOG OGsCOG5498@1|root,COG5498@2|Bacteria,2GNW3@201174|Actinobacteria
Descriptionglycoside hydrolase family 81
Cds size378
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586747.476968-CDS-C-australica_Contig_10122:458..8361682586747.476968-CDS-C-australica_Contig_10122:458..836Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10122 459..836 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10122.1.1prot_C-australica_Contig_10122.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10122 459..836 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10122.1.1

>prot_C-australica_Contig_10122.1.1 ID=prot_C-australica_Contig_10122.1.1|Name=mRNA_C-australica_Contig_10122.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=126bp
RFTTVFFLVSFSIINSIVNAQSVNIGKGSYSTALPAAAVGPQNVHGQNLS
PKVSSDFFKPIQTNDFWSRLIFPFFDDAHSSVLYAHPLNAKAISSGLQIG
YTTNSFLTGGDYIYPFSPQLRVGVDG
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mRNA from alignment at C-australica_Contig_10122:459..836+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10122.1.1 ID=mRNA_C-australica_Contig_10122.1.1|Name=mRNA_C-australica_Contig_10122.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=378bp|location=Sequence derived from alignment at C-australica_Contig_10122:459..836+ (Chrysoparadoxa australica CS_1217)
CGATTTACTACAGTATTTTTTCTAGTCTCCTTTTCCATTATAAACTCAAT AGTAAATGCACAGTCAGTAAACATCGGTAAAGGAAGTTACAGCACTGCGT TACCTGCTGCAGCAGTGGGGCCACAAAATGTACATGGTCAAAATCTTTCG CCAAAAGTAAGTTCTGATTTTTTTAAACCTATTCAGACAAACGATTTTTG GAGCAGACTGATATTTCCATTTTTTGATGACGCCCACTCCAGCGTTCTAT ATGCACATCCTTTAAATGCAAAAGCTATCAGCTCGGGACTTCAGATAGGC TATACAACAAATTCTTTCTTAACCGGTGGAGATTACATTTATCCATTTTC ACCTCAGCTCAGAGTAGGTGTTGACGGA
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Coding sequence (CDS) from alignment at C-australica_Contig_10122:459..836+

>mRNA_C-australica_Contig_10122.1.1 ID=mRNA_C-australica_Contig_10122.1.1|Name=mRNA_C-australica_Contig_10122.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=378bp|location=Sequence derived from alignment at C-australica_Contig_10122:459..836+ (Chrysoparadoxa australica CS_1217)
CGATTTACTACAGTATTTTTTCTAGTCTCCTTTTCCATTATAAACTCAAT
AGTAAATGCACAGTCAGTAAACATCGGTAAAGGAAGTTACAGCACTGCGT
TACCTGCTGCAGCAGTGGGGCCACAAAATGTACATGGTCAAAATCTTTCG
CCAAAAGTAAGTTCTGATTTTTTTAAACCTATTCAGACAAACGATTTTTG
GAGCAGACTGATATTTCCATTTTTTGATGACGCCCACTCCAGCGTTCTAT
ATGCACATCCTTTAAATGCAAAAGCTATCAGCTCGGGACTTCAGATAGGC
TATACAACAAATTCTTTCTTAACCGGTGGAGATTACATTTATCCATTTTC
ACCTCAGCTCAGAGTAGGTGTTGACGGA
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