mRNA_C-australica_Contig_1011.6.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1011.6.1 vs. uniprot
Match: A0A836C7R7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7R7_9STRA) HSP 1 Score: 338 bits (866), Expect = 1.100e-107 Identity = 167/323 (51.70%), Postives = 219/323 (67.80%), Query Frame = 3 Query: 3 DGHSTAFNYTWLRVNCPRGIHPTGQRMISPVVAKSIKPTKVV-VDGDHTVNVTWSDGHESGFDAEWLRIHDNSVANQIEK--------------NHASWPNSLKAWEAIPVVSFKDYMECEKSVHSLLRHINTSGLCIVEGCGVETDTVQHVAQRIAPLSHSYLYGDSFDVIVQEYARNIAYTHEALPYHQDLVYYESAPGLQLLHCLRFDEELKGGKTIWLDALAAANVFRRKHPKEFDVLKSVPATFQKIRDSVTPEEGDGNDSS---------ATPNAAAASPAHLTYQRPHIEVTADGEIVAVNWAPMFEGMLSIPIQD 899 DGH++ +N TWLRVNCP +H +GQR+ SP + P V +G + VTWSDGHES + ++WLR+HD+SV++ I++ N SWP +L++WEAIP V+F D+ E+ V+ LLR +N +GLC +EG G E DTV+ +AQRI+PLSHS LYG +FDVI Q+ ARNIA+T E L HQDLVYYES PGLQLLHCL +D ++GG +++LDA AA +FR+ H + F VL + PATFQKIR V EEG+G + +T NAAA S +++TYQRPHIEV DGEI V WAPMFEG L +P +D Sbjct: 41 DGHASIYNTTWLRVNCPANVHASGQRLASPGDVLDVTPVTVAPAEGKEGMRVTWSDGHESVYPSQWLRLHDSSVSSIIDRQVRQWRAGGARVSENQGSWPVALRSWEAIPKVAFADFTAGEEGVYQLLRSVNNTGLCTLEGVGTEPDTVESIAQRISPLSHSMLYGRTFDVISQDNARNIAFTSEHLRPHQDLVYYESPPGLQLLHCLHYDASVEGGASLFLDAFEAARLFRKAHAEAFSVLTTTPATFQKIRKLVVQEEGEGGEGDKGEVEKGGYSTANAAALSASYMTYQRPHIEVDTDGEITGVFWAPMFEGTLHVPSKD 363
BLAST of mRNA_C-australica_Contig_1011.6.1 vs. uniprot
Match: A0A6H5KBM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM7_9PHAE) HSP 1 Score: 300 bits (768), Expect = 1.210e-92 Identity = 152/300 (50.67%), Postives = 200/300 (66.67%), Query Frame = 3 Query: 3 DGHSTAFNYTWLRVNCPRGIHPTGQRMISPV-VAKSIKPTKVVVDGDHTVNVTWSDGHESGFDAEWLRIHDNSVANQIEKNHASWPNSLKAWEAIPVVSFKDYMECEKSVHSLLRHINTSGLCIVEGCGVETDTVQHVAQRIAPLSHSYLYGDSFDVIVQEYARNIAYTHEALPYHQDLVYYESAPGLQLLHCLRFDEELKGGKTIWLDALAAANVFRRKHPKEFDVLKSVPATFQKIRDSVTPEEGDGNDSSATPNAAAASPAHLTYQRPHIEVTADGEIVAVNWAPMFEGMLSIPIQD 899 DGH++ F+YTWLRVNCP +H +GQR + P V +KP + GD V++TWSDGH S + WLR HDNS + E++H S P L+AW+AIP V +DYME +V+ LR IN G+ ++E G E TV +A+R+AP+SH LYG+ FDVI Q+ RN+AYT+E L H DLVYYES PGLQ LHCL FDE KGG+T +LDA AAA+ R K P++F+VL VP TF+KIR + +G+G N A P+H+ YQRP ++ A+GE++AV WAPMFEG+L QD Sbjct: 96 DGHNSYFDYTWLRVNCPSFLHESGQRTLFPGDVDPGLKPVETSA-GDSRVSITWSDGHLSCYGTAWLREHDNSPSALHERSHGSRPAPLRAWDAIPKVDARDYMEDGGAVYRTLRKINRVGVVLLENAGAEEGTVLDLARRVAPVSHHTLYGEMFDVISQDNPRNLAYTNERLRMHMDLVYYESPPGLQFLHCLEFDEGAKGGQTNFLDAFAAADHLREKFPEKFEVLSRVPTTFEKIRAAAPRVDGEGR------NVQALEPSHMQYQRPIFQLDANGELLAVTWAPMFEGVLMCQPQD 388
BLAST of mRNA_C-australica_Contig_1011.6.1 vs. uniprot
Match: D7FYZ1_ECTSI (TauD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ1_ECTSI) HSP 1 Score: 223 bits (568), Expect = 2.660e-66 Identity = 112/218 (51.38%), Postives = 148/218 (67.89%), Query Frame = 3 Query: 96 VAKSIKPTKVVVD-GDHTVNVTWSDGHESGFDAEWLRIHDNSVANQIEKNHASWPNSLKAWEAIPVVSFKDYMECEKSVHSLLRHINTSGLCIVEGCGVETDTVQHVAQRIAPLSHSYLYGDSFDVIVQEYARNIAYTHEALPYHQDLVYYESAPGLQLLHCLRFDEELKGGKTIWLDALAAANVFRRKHPKEFDVLKSVPATFQKIRDSVTPEEGDG 746 VA ++P GD V++TWSDGH S + WLR HDNS + E++H S P L AW+AIP V ++YME + +++ LR +N G+ ++E GVE TV +A+R+AP+SH LYGD FDV+ Q RN+AYT+E L H DLVYYESAPGLQLLHCL FDE KGG+T +LDA AAA+ FR K P++F+VL VP TF+KIR + +G+G Sbjct: 25 VAGQLEPMHTCTSAGDSRVSITWSDGHLSSYGTAWLREHDNSPSALHERSHGSRPAPLCAWDAIPKVDAREYMEDDGALYKTLRKVNRVGVVLLENAGVEEGTVLDLARRVAPVSHHTLYGDMFDVVSQANPRNMAYTNERLRMHMDLVYYESAPGLQLLHCLEFDEGGKGGQTSFLDAFAAADHFREKFPEKFEVLSRVPTTFEKIRAAAPRVDGEG 242
BLAST of mRNA_C-australica_Contig_1011.6.1 vs. uniprot
Match: A0A8K1FLN9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLN9_PYTOL) HSP 1 Score: 202 bits (514), Expect = 1.180e-55 Identity = 112/303 (36.96%), Postives = 172/303 (56.77%), Query Frame = 3 Query: 3 DGHSTAFNYTWLRV--NCPRGIHPTGQRMISPV-VAKSIKPTKVVVDGDHTVNVTWS-DGHESGFDAEWLRIHDNSVANQIEKNHASWPNSLKAWEAIPVVSFKDYMECEKSVHSLLRHINTSGLCIVEGCGVETDTVQHVAQRIAPLSHSYLYGDSFDVIVQEYARNIAYTHEALPYHQDLVYYESAPGLQLLHCLRFDEELKGGKTIWLDALAAANVFRRKHPKEFDVLKSVPATFQKIRDSVTPEEGDGNDSSATPNAAAASPAHLTYQRPHIEVTADGEIVAVNWAPMFEGMLSIPIQD 899 DGH++ F+ LR CP H TGQR+++ + ++++ + V G+ T+ V W DGH+S F +WLR + S ++ + +L + +P V + + M ++ + +L + +GL +V+ V+ VAQR+A +SHS+LYGD FDVI ++ NIAYT+ L +H DL YYES PG QLLH LRFDE ++GG++ ++D AA + RR HP+ F VPATF+K + ++PA + YQRPHI + E+VAV+W+P FEG L +P +D Sbjct: 92 DGHASQFHLLHLRTWCPCPECQHETGQRLVNSADIPENLEINDMFVKGE-TLTVVWGPDGHKSTFTWDWLRENCYSASSLDRRARDMTTKALAPGDEVPCVEYVEMMNSDEGLLKMLHQVVENGLTVVKNTPSNPGQVKTVAQRVATISHSFLYGDIFDVIAEQNPVNIAYTNHHLKHHLDLAYYESPPGFQLLHALRFDETVQGGESTFVDVFAATDELRRLHPQHFQTFCRVPATFRKH------------------HLNRSNPAVMEYQRPHILLNHREEVVAVHWSPPFEGPLRVPFED 375
BLAST of mRNA_C-australica_Contig_1011.6.1 vs. uniprot
Match: K3WUI5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUI5_GLOUD) HSP 1 Score: 197 bits (501), Expect = 1.030e-53 Identity = 114/305 (37.38%), Postives = 166/305 (54.43%), Query Frame = 3 Query: 3 DGHSTAFNYTWLR--VNCPRGIHPTGQRMI-SPVVAKSIKPTKVVVDGDHTVNVTWS-DGHESGFDAEWLRIHDNSVANQIEKNHASWPNSLKAWEAIPVVSFKDYMECE--KSVHSLLRHINTSGLCIVEGCGVETDTVQHVAQRIAPLSHSYLYGDSFDVIVQEYARNIAYTHEALPYHQDLVYYESAPGLQLLHCLRFDEELKGGKTIWLDALAAANVFRRKHPKEFDVLKSVPATFQKIRDSVTPEEGDGNDSSATPNAAAASPAHLTYQRPHIEVTADGEIVAVNWAPMFEGMLSIPIQD 899 DG + F+ LR CP H TGQR++ S + ++ + + G TVN+ W+ GH+S F WLR + S A + L +P+ + + M+ E + + LL I +GL +V+ E V+ +A+RIAP+SHS+LYGD FDV+ ++ NIAYT L +H DL YYES PG Q LH LRFDE ++GG++ ++D A A FRR HPK F+ VPATF+K + ++PA + YQRPHI++ E++AV+W+P FEG L +P D Sbjct: 96 DGRISRFHLMHLRSWCLCPECQHETGQRLVNSSDIDPDLEIEDIFIKGS-TVNIVWAGSGHKSSFPWSWLRENCYSGATLDQNAKDLTTTMLLPSAPVPMSEYAEVMDTEDDQGLFGLLHQIVENGLAVVQNTPSEKGQVKKIAERIAPVSHSFLYGDIFDVVAEQNPVNIAYTTHHLKHHLDLAYYESPPGFQFLHALRFDETVQGGESTFVDVFAVAQEFRRLHPKHFETFCRVPATFKKH------------------HLNRSNPAIMEYQRPHIQLNHRDEVIAVHWSPPFEGPLKVPFDD 381
BLAST of mRNA_C-australica_Contig_1011.6.1 vs. uniprot
Match: W2R732_PHYPN (Uncharacterized protein n=16 Tax=Phytophthora TaxID=4783 RepID=W2R732_PHYPN) HSP 1 Score: 194 bits (494), Expect = 7.590e-53 Identity = 119/304 (39.14%), Postives = 166/304 (54.61%), Query Frame = 3 Query: 3 DGHSTAFNYTWLRVNCPRGI--HPTGQRMI--SPVVAKSIKPTKVVVDGDHTVNVTWSDGHESGFDAEWLRIHDNS--VANQIEKNHASWPNSLKAWEAIPVVSFKDYMEC--EKSVHSLLRHINTSGLCIVEGCGVETDTVQHVAQRIAPLSHSYLYGDSFDVIVQEYARNIAYTHEALPYHQDLVYYESAPGLQLLHCLRFDEELKGGKTIWLDALAAANVFRRKHPKEFDVLKSVPATFQKIRDSVTPEEGDGNDSSATPNAAAASPAHLTYQRPHIEVTADGEIVAVNWAPMFEGMLSIP 890 DG + F+ LR CP HPTGQR+I S V + KV V GD T+N+ W+D HES F +WL + S +Q + A+ P +L+A +P ++ M+ +K ++ LR + G ++ V+ +A+RIAP+SHS+ YGD FDV+ + NIAYT L H DL YYES PGLQ LH LRFDE +KGG++ ++D A A FRR HP+ F VPATF+K +T E+ + YQRPHI++ E+VAV+W+P FEG L +P Sbjct: 81 DGKRSKFHLLHLRTWCPCSECGHPTGQRVINCSEVNQDELDIEKVFVKGD-TLNIVWNDHHESSFSCKWLLENSYSDWALDQFAHDMATTPLALEA--PVPSTEYERMMDTSDDKGLYEALRQVVDHGFTVIRNTPSVEGAVKTLAERIAPISHSFQYGDVFDVVAEPTPVNIAYTTVYLKSHVDLAYYESPPGLQFLHALRFDESVKGGESTFVDVFAVAEEFRRLHPEHFATFCRVPATFKKHH--LTREKAT----------------IMEYQRPHIQLNHRDEVVAVHWSPPFEGPLRVP 363
BLAST of mRNA_C-australica_Contig_1011.6.1 vs. uniprot
Match: A0A5D6XU33_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XU33_9STRA) HSP 1 Score: 191 bits (485), Expect = 7.010e-52 Identity = 110/288 (38.19%), Postives = 160/288 (55.56%), Query Frame = 3 Query: 48 CPRGIHPTGQRMI-SPVVAKSIKPTKVVVDGDHTVNVTWS-DGHESGFDAEWLRIHDNSVANQIEKNHASWPNSLKAWEAIPVVSFKDYMEC--EKSVHSLLRHINTSGLCIVEGCGVETDTVQHVAQRIAPLSHSYLYGDSFDVIVQEYARNIAYTHEALPYHQDLVYYESAPGLQLLHCLRFDEELKGGKTIWLDALAAANVFRRKHPKEFDVLKSVPATFQKIRDSVTPEEGDGNDSSATPNAAAASPAHLTYQRPHIEVTADGEIVAVNWAPMFEGMLSIPIQD 899 CP H TGQR++ S + + + + V G T+N+ W+ DGH+S F WLR + S A ++ +L IP + M+ ++ + LL + +GL +V E V+ +A+RIAP+SHS+LYGD FDVI ++ NIAYT L +H DL YYES PGLQ LH LRFDE ++GG++ ++D AAA RR HP F+ L VPATF+K + ++PA + +QRPHI++ E++AV+W+P FEG L +P D Sbjct: 64 CPTCQHETGQRLVNSSDIPLNPEIEDIFVKGS-TLNIVWAGDGHKSTFAWSWLRDNCYSTAALDQRASGLTTTALAPRAPIPTSDYSRVMDATDDEGLLELLHQVVENGLAVVANTPSEPGQVKKIAERIAPVSHSFLYGDIFDVIAEQNPVNIAYTTHHLKHHLDLAYYESPPGLQFLHALRFDESVQGGESTFVDVFAAAAELRRLHPTHFETLCRVPATFKKH------------------HLHRSNPAVMEFQRPHIQLNHRNEVIAVHWSPPFEGPLKVPFDD 332
BLAST of mRNA_C-australica_Contig_1011.6.1 vs. uniprot
Match: A0A2D4CIR6_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIR6_PYTIN) HSP 1 Score: 195 bits (495), Expect = 7.540e-51 Identity = 113/305 (37.05%), Postives = 174/305 (57.05%), Query Frame = 3 Query: 3 DGHSTAFNYTWLR--VNCPRGIHPTGQRMISPV-VAKSIKPTKVVVDGDHTVNVTWS-DGHESGFDAEWLRIHDNSVA--NQIEKNHASWPNSLKAWEAIPVVSFKDYMECEKSVHSLLRHINTSGLCIVEGCGVETDTVQHVAQRIAPLSHSYLYGDSFDVIVQEYARNIAYTHEALPYHQDLVYYESAPGLQLLHCLRFDEELKGGKTIWLDALAAANVFRRKHPKEFDVLKSVPATFQKIRDSVTPEEGDGNDSSATPNAAAASPAHLTYQRPHIEVTADGEIVAVNWAPMFEGMLSIPIQD 899 DG ++ ++ LR CP H TGQR+++ VA+ ++ + V G+ T+ + W DGH+S F WLR + S A ++ ++ A+ P L IP +++ ME ++ + +L + G +++ E V+ VA+R+AP+SHS+LYGD FDVI ++ NIAYT+ L +H DL YYES PG QLLH LRFDE ++GG++ ++D A A FR++HP F VPATF+K + ++PA + YQRPHI++ E++AV+W+P FEG L +P D Sbjct: 392 DGRNSKYHLLHLRSWCLCPACQHETGQRLVNSADVAEDLEIRDMFVKGE-TLTIVWGPDGHQSTFPWAWLRENCYSTAALDRRARDMATIP--LLPGAPIPEIAYDRMMENDEGLLEMLHQVVEHGFTVIKNTPSEPRQVKKVAERVAPVSHSFLYGDVFDVIAEQNPVNIAYTNHHLKHHLDLAYYESPPGFQLLHALRFDETVQGGESTFVDVFAVAEAFRQQHPDHFLTFCRVPATFKKH------------------HLNRSNPAVMEYQRPHIQLNHREEVIAVHWSPPFEGPLRVPFDD 675
BLAST of mRNA_C-australica_Contig_1011.6.1 vs. uniprot
Match: A0A485LE95_9STRA (Aste57867_18585 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LE95_9STRA) HSP 1 Score: 186 bits (471), Expect = 6.450e-50 Identity = 118/308 (38.31%), Postives = 164/308 (53.25%), Query Frame = 3 Query: 3 DGHSTAFNYTWLRV--NCPRGIHPTGQRMISPVVAKSI-KPTKVVVDGDHTVNVTWSDG----HESGFDAEWLR--IHDNSVANQIEKNHASWPNSLKAWEAIPVVSFKDYMECEKSVHSLLRHINTSGLCIVEGCGVETDTVQHVAQRIAPLSHSYLYGDSFDVIVQEYARNIAYTHEALPYHQDLVYYESAPGLQLLHCLRFDEELKGGKTIWLDALAAANVFRRKHPKEFDVLKSVPATFQKIRDSVTPEEGDGNDSSATPNAAAASPAHLTYQRPHIEVTADGEIVAVNWAPMFEGMLSIPIQD 899 DGHS++F+ LR CP+ H TGQR+++ A + + V V D V + W+ G H S F A +R +D + + I A+ P +L A A+ V + D + + V +L +HI GL IV VQ VA+ IAP+SH++LYG+ FDV+ + NIAYT E L H DL YYES PGLQLLH LR+D ++GG + + D AA R +HP+ F L VPATF+K + A+PA L Y+RPHI + E+V V W+P FEG L +P +D Sbjct: 44 DGHSSSFDLFHLRAWCTCPQCQHSTGQRLVNIADAPAAPRVDSVQVASDGGVQIQWAGGDATPHASHFQASEIRKMCYDAASLDVI----AATPPALPATTAVSSVQYDD-LSSDAGVLALCQHIMRDGLAIVRHVPSTRGQVQVVAETIAPISHTHLYGNVFDVVAEHNPVNIAYTSERLKLHLDLAYYESPPGLQLLHALRYDPTVQGGDSTFRDTFDAAETLRVRHPEHFRTLTRVPATFKKF------------------HLDRATPAILEYERPHIALNHRDEVVGVFWSPPFEGPLRVPAED 328
BLAST of mRNA_C-australica_Contig_1011.6.1 vs. uniprot
Match: A0A484DY64_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DY64_BRELC) HSP 1 Score: 186 bits (472), Expect = 1.170e-49 Identity = 115/309 (37.22%), Postives = 168/309 (54.37%), Query Frame = 3 Query: 3 DGHSTAFNYTWLRV--NCPRGIHPTGQRMI--SPVVAKSIKPTKVVVDGDHTVNVTWSDGHESGFDAEWLRIHDNSVANQIEKNHA----SWPNSLKAWEAIPVVSFKDYMEC--EKSVHSLLRHINTSGLCIVEGCGVETDTVQHVAQRIAPLSHSYLYGDSFDVIVQEYARNIAYTHEALPYHQDLVYYESAPGLQLLHCLRFDEELKGGKTIWLDALAAANVFRRKHPKEFDVLKSVPATFQKIRDSVTPEEGDGNDSSATPNAAAASPAHLTYQRPHIEVTADGEIVAVNWAPMFEGMLSIPIQD 899 DG + ++ LR CP+ HPTGQR+ S V + KV V GD T+N+ W+D HES F WL NS + NHA + P +L A +P + ++M+ ++ ++ LR + +GL ++ + + V+ +A+RIAP+SHS YGD FDV+ + NIAYT L H DL YYES PG Q LH LR+D +KGG++ ++D A A+ FRR +P+ F VPATF+K + T NA + YQRPHI++ E++AV+W+P FEG L + +D Sbjct: 83 DGKMSKYHLLHLRTWCLCPQCGHPTGQRLTNCSEVNKSGLDIDKVFVKGD-TLNIVWNDHHESSFSCAWLLA--NSYSEWALDNHARRMATVPLALDA--PVPTTEYANFMDTSNDEGLYEALRQVVENGLTVIRNTPLISGAVKLLAERIAPVSHSLQYGDVFDVMAEPTPVNIAYTSVYLKSHVDLAYYESPPGFQFLHALRYDPSVKGGESTFVDVFAVADEFRRIYPEHFATFTRVPATFKKHHLTRT-------------NATI-----MEYQRPHIQLNHREEVIAVHWSPPFEGPLRVSFED 368 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1011.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1011.6.1 >prot_C-australica_Contig_1011.6.1 ID=prot_C-australica_Contig_1011.6.1|Name=mRNA_C-australica_Contig_1011.6.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=321bp MISPVVAKSIKPTKVVVDGDHTVNVTWSDGHESGFDAEWLRIHDNSVANQback to top mRNA from alignment at C-australica_Contig_1011:13190..16920+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1011.6.1 ID=mRNA_C-australica_Contig_1011.6.1|Name=mRNA_C-australica_Contig_1011.6.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3731bp|location=Sequence derived from alignment at C-australica_Contig_1011:13190..16920+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1011:13190..16920+ >mRNA_C-australica_Contig_1011.6.1 ID=mRNA_C-australica_Contig_1011.6.1|Name=mRNA_C-australica_Contig_1011.6.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=963bp|location=Sequence derived from alignment at C-australica_Contig_1011:13190..16920+ (Chrysoparadoxa australica CS_1217)back to top |