Homology
BLAST of mRNA_C-australica_Contig_101.6.1 vs. uniprot
Match:
A0A836CJD0_9STRA (Intraflagellar transport protein 20 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD0_9STRA)
HSP 1 Score: 154 bits (388), Expect = 1.140e-43
Identity = 79/130 (60.77%), Postives = 103/130 (79.23%), Query Frame = 2
Query: 11 DERVHISFSDEGHIQVLDTDVLKHSQEIEEECAAFVAKTLEFSSSVHGIVEVLGAHADKIERAKLRAIGARNKVDGEVDYRASQKKALQALIAEKMAELDRCNLQYNALAQVEGEQQALIDKLSNSETLA 400
+E+V +SF +E ++VLD DV KHS+E+EE C AF K F+++VHGIV VL AHA +IE+ KLRAIG RNKVDGE ++RA Q+ ALQ LI EKM+ELDR N+QY +L +VE EQQALI++LSNSE++A
Sbjct: 7 EEKVQVSFDEECRVRVLDPDVFKHSEELEENCKAFATKMQAFNAAVHGIVAVLDAHASRIEKQKLRAIGMRNKVDGEAEHRARQRMALQVLIKEKMSELDRNNVQYQSLLRVEAEQQALIERLSNSESVA 136
BLAST of mRNA_C-australica_Contig_101.6.1 vs. uniprot
Match:
D7FRA8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRA8_ECTSI)
HSP 1 Score: 141 bits (356), Expect = 6.370e-39
Identity = 77/133 (57.89%), Postives = 99/133 (74.44%), Query Frame = 2
Query: 11 DERVHISFSDEGHIQVLDTDVLKHSQEIEEECAAFVAKTLEFSSSVHGIVEVLGAHADKIERAKLRAIGARNKVDGEVDYRASQKKALQALIAEKMAELDRCNLQYNALAQVEGEQQALIDKLSNSETLAETE 409
D V ISF +E I+VLD + KHS+ +EEEC FV K EF++SVH IVEVL +A +I++ KLRAIG RNKV+GE++YR QK +LQ ++ EKM ELDR NLQY +L ++E EQ ALI++LSNSETL E E
Sbjct: 4 DNGVQISFDEECRIRVLDPEQFKHSEMLEEECRGFVDKIREFNASVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRQKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSETLTEQE 136
BLAST of mRNA_C-australica_Contig_101.6.1 vs. uniprot
Match:
A0A7S2W6I1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6I1_9STRA)
HSP 1 Score: 137 bits (346), Expect = 1.490e-37
Identity = 73/129 (56.59%), Postives = 96/129 (74.42%), Query Frame = 2
Query: 5 MSDERVHISFSDEGHIQVLDTDVLKHSQEIEEECAAFVAKTLEFSSSVHGIVEVLGAHADKIERAKLRAIGARNKVDGEVDYRASQKKALQALIAEKMAELDRCNLQYNALAQVEGEQQALIDKLSNSE 391
M + RV I F +E ++VLD + KH++E+ E+C FV+K +FS +VH +V+VLGA ADKIER KLRAIG RN V+ EV+ R S+K+ALQ+ I EKMAEL+R N QYN+L +E EQ ALI+KLSN E
Sbjct: 1 MEENRVPICFDEESRVRVLDPEKFKHTEELAEQCTGFVSKIQDFSGTVHVLVDVLGAQADKIEREKLRAIGQRNMVESEVENRESKKRALQSQINEKMAELERFNKQYNSLVNLEAEQLALIEKLSNHE 129
BLAST of mRNA_C-australica_Contig_101.6.1 vs. uniprot
Match:
A0A6V2PVC6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2PVC6_HETAK)
HSP 1 Score: 129 bits (323), Expect = 4.210e-34
Identity = 70/129 (54.26%), Postives = 93/129 (72.09%), Query Frame = 2
Query: 11 DERVHISFSDEGHIQVLDTDVLKHSQEIEEECAAFVAKTLEFSSSVHGIVEVLGAHADKIERAKLRAIGARNKVDGEVDYRASQKKALQALIAEKMAELDRCNLQYNALAQVEGEQQALIDKLSNSETL 397
DE+V ISF DE I+VLD + KH++E+E EC FV K +F S+VH +VEVL A +IE AKL+AIG RN+V+GE + R Q+ AL +IAEK AELDR LQY +L VE EQ ALI+KL+N++++
Sbjct: 2 DEKVEISFDDEYKIRVLDAEKFKHTEELERECTDFVKKIQDFHSNVHSLVEVLDKQAKRIEHAKLKAIGQRNQVEGERENRERQRIALNTMIAEKKAELDRYTLQYQSLKGVEAEQLALIEKLTNNDSI 130
BLAST of mRNA_C-australica_Contig_101.6.1 vs. uniprot
Match:
A0A7S2BU93_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BU93_9STRA)
HSP 1 Score: 125 bits (314), Expect = 1.790e-32
Identity = 71/131 (54.20%), Postives = 94/131 (71.76%), Query Frame = 2
Query: 2 VMSDERVHISFSDEGHIQVLDTDVLKHSQEIEEECAAFVAKTLEFSSSVHGIVEVLGAHADKIERAKLRAIGARNKVDGEVDYRASQKKALQALIAEKMAELDRCNLQYNALAQVEGEQQALIDKLSNSET 394
V +++V+I F DE I+VL + KH++E+ E+C AFV K +FS +VH +VEVL A A KIE KL+AIG RN V+ E + RA ++ ALQ+ I EKMAELDR QY +LA+VE EQ ALI+KLSN+ET
Sbjct: 22 VDDEKKVNICFDDESRIRVLSPEKFKHTEELAEQCTAFVNKIEDFSGTVHVLVEVLDAQAKKIELEKLKAIGQRNMVESETENRARRQLALQSQINEKMAELDRYAKQYQSLARVEAEQLALIEKLSNNET 152
BLAST of mRNA_C-australica_Contig_101.6.1 vs. uniprot
Match:
A0A7S2V367_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V367_9STRA)
HSP 1 Score: 123 bits (308), Expect = 7.630e-32
Identity = 65/129 (50.39%), Postives = 95/129 (73.64%), Query Frame = 2
Query: 5 MSDERVHISFSDEGHIQVLDTDVLKHSQEIEEECAAFVAKTLEFSSSVHGIVEVLGAHADKIERAKLRAIGARNKVDGEVDYRASQKKALQALIAEKMAELDRCNLQYNALAQVEGEQQALIDKLSNSE 391
M ++V ISF D+ I+VLD++ KH++E+E+EC FV K F+++VH +VEVL A A +IE AKL+AIG RN+V+GE ++R Q+ AL LIAEK AELDR LQ+ +L VE EQ A++++L+N++
Sbjct: 1 MDPDKVSISFDDDYRIRVLDSEKYKHTEELEKECKEFVQKIQTFNTTVHTLVEVLDAQAKRIENAKLKAIGQRNQVEGEREHRERQRIALNTLIAEKKAELDRYTLQHQSLVIVEAEQAAMVERLTNND 129
BLAST of mRNA_C-australica_Contig_101.6.1 vs. uniprot
Match:
A0A7S2GG26_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GG26_9STRA)
HSP 1 Score: 118 bits (295), Expect = 7.500e-30
Identity = 61/128 (47.66%), Postives = 90/128 (70.31%), Query Frame = 2
Query: 8 SDERVHISFSDEGHIQVLDTDVLKHSQEIEEECAAFVAKTLEFSSSVHGIVEVLGAHADKIERAKLRAIGARNKVDGEVDYRASQKKALQALIAEKMAELDRCNLQYNALAQVEGEQQALIDKLSNSE 391
+D++V+I F DE I+VL + H++E+ E+C AFV K +FS +VH +VE+L + A IE KLR IG RN+V+ E+D+R+ Q+ ALQA IAEK AEL+RC+ Y++L ++E EQ L+ SNS+
Sbjct: 7 NDDKVNICFDDECKIRVLSPEKFDHTKELAEQCTAFVNKIADFSDTVHVLVEILDSQAKMIETEKLRTIGQRNRVESEMDHRSRQQLALQAQIAEKKAELERCSKHYDSLVRIEAEQNKLLKNFSNSD 134
BLAST of mRNA_C-australica_Contig_101.6.1 vs. uniprot
Match:
A0A7S1CRI3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CRI3_9STRA)
HSP 1 Score: 113 bits (282), Expect = 5.460e-28
Identity = 63/127 (49.61%), Postives = 87/127 (68.50%), Query Frame = 2
Query: 11 DERVHISFSDEGHIQVLDTDVLKHSQEIEEECAAFVAKTLEFSSSVHGIVEVLGAHADKIERAKLRAIGARNKVDGEVDYRASQKKALQALIAEKMAELDRCNLQYNALAQVEGEQQALIDKLSNSE 391
D V I+F D+ ++VL+ D ++ +EE C+ FV K F+++VH +VEVL A IE+ KLRAIGARN + E + R +KK ++ALIAEK A LDR QY +L +VEGEQ+ALI+KLSN+E
Sbjct: 2 DSNVTITFDDKYRVRVLEADKFDQTRALEEACSTFVQKIEAFNATVHSLVEVLSTSAAAIEKEKLRAIGARNLSEAEPETRERRKKQIRALIAEKRAALDRLQRQYESLEKVEGEQRALIEKLSNNE 128
BLAST of mRNA_C-australica_Contig_101.6.1 vs. uniprot
Match:
F0Y6Q5_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6Q5_AURAN)
HSP 1 Score: 109 bits (273), Expect = 1.090e-26
Identity = 62/125 (49.60%), Postives = 88/125 (70.40%), Query Frame = 2
Query: 26 ISFSDEGHIQVLDTDVLKHSQEIEEECAAFVAKTL---EFSSSVHGIVEVLGAHADKIERAKLRAIGARNKVDGEVDYRASQKKALQALIAEKMAELDRCNLQYNALAQVEGEQQALIDKLSNSE 391
++F D+ I+VLD + H++E+ E +FVA EFS + GIVEVL ++A +IE+AKL+AIG RN+V E + R ++ALQA+IAEK AEL+R Q+ +L+QVE EQ+AL+DKL NSE
Sbjct: 1 VTFDDKYRIRVLDVEKYAHTEELSEASGSFVASAAPAPEFSQLITGIVEVLDSNAQRIEKAKLKAIGMRNRVLSERENRDQHRRALQAMIAEKTAELERYQTQHQSLSQVEAEQRALVDKLGNSE 125
BLAST of mRNA_C-australica_Contig_101.6.1 vs. uniprot
Match:
F0WTS2_9STRA (Intraflagellar Transport Protein 20 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WTS2_9STRA)
HSP 1 Score: 108 bits (270), Expect = 3.730e-26
Identity = 61/124 (49.19%), Postives = 82/124 (66.13%), Query Frame = 2
Query: 23 HISFSDEGHIQVLDTDVLKHSQEIEEECAAFVAKTLEFSSSVHGIVEVLGAHADKIERAKLRAIGARNKVDGEVDYRASQKKALQALIAEKMAELDRCNLQYNALAQVEGEQQALIDKLSNSET 394
HISF DE + L+ D + H+QE+E E FV K EF + G+++VL A +IER KL+AIG RNKV+ E++ R QK + LI EK L+R NLQY +L +V EQQAL++KLSN+ET
Sbjct: 10 HISFDDEYRLHALEKDQISHTQELEVESNQFVTKVDEFHEIIKGVLQVLEAQEQRIEREKLKAIGERNKVESELENRNRQKGIMLVLIKEKETXLERYNLQYESLFKVLEEQQALMEKLSNNET 133
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_101.6.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 1.14e-43 / Id = 60.77 Expect = 6.37e-39 / Id = 57.89 Expect = 1.49e-37 / Id = 56.59 Expect = 4.21e-34 / Id = 54.26 Expect = 1.79e-32 / Id = 54.20 Expect = 7.63e-32 / Id = 50.39 Expect = 7.50e-30 / Id = 47.66 Expect = 5.46e-28 / Id = 49.61 Expect = 1.09e-26 / Id = 49.60 Expect = 3.73e-26 / Id = 49.19 Sequence A0A836CJD0_9STRA D7FRA8_ECTSI A0A7S2W6I1_9STRA A0A6V2PVC6_HETAK A0A7S2BU93_9STRA A0A7S2V367_9STRA A0A7S2GG26_9STRA A0A7S1CRI3_9STRA F0Y6Q5_AURAN F0WTS2_9STRA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Seed ortholog 2880.D7FRA8 Preferred name IFT20 PFAMs IFT20 Model size 779 Max annot lvl 2759|Eukaryota KEGG ko ko:K16473 Hectar predicted targeting category other localisation GOs GO:0000139,GO:0001655,GO:0001736,GO:0001738,GO:0001750,GO:0001822,GO:0002009,GO:0002046,GO:0003008,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005801,GO:0005813,GO:0005814,GO:0005815,GO:0005856,GO:0005902,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007164,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007399,GO:0007423,GO:0007507,GO:0007610,GO:0007611,GO:0007612,GO:0007632,GO:0008104,GO:0008150,GO:0008283,GO:0008306,GO:0008542,GO:0009314,GO:0009416,GO:0009628,GO:0009653,GO:0009888,GO:0009894,GO:0009966,GO:0009987,GO:0010506,GO:0010646,GO:0010970,GO:0012505,GO:0014706,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016241,GO:0017016,GO:0017137,GO:0019222,GO:0019899,GO:0022008,GO:0022607,GO:0023051,GO:0023052,GO:0030030,GO:0030031,GO:0030111,GO:0030154,GO:0030182,GO:0030425,GO:0030705,GO:0030990,GO:0030992,GO:0031090,GO:0031175,GO:0031267,GO:0031323,GO:0031329,GO:0031344,GO:0031503,GO:0031514,GO:0031984,GO:0032391,GO:0032420,GO:0032421,GO:0032501,GO:0032502,GO:0032838,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034067,GO:0034613,GO:0035051,GO:0035735,GO:0035845,GO:0035869,GO:0036064,GO:0036372,GO:0036477,GO:0042073,GO:0042461,GO:0042490,GO:0042692,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043583,GO:0044085,GO:0044087,GO:0044088,GO:0044292,GO:0044297,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044782,GO:0045184,GO:0046530,GO:0046907,GO:0048468,GO:0048513,GO:0048583,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048738,GO:0048839,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051020,GO:0051128,GO:0051146,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051642,GO:0051649,GO:0051716,GO:0055007,GO:0060091,GO:0060113,GO:0060119,GO:0060122,GO:0060271,GO:0060429,GO:0060491,GO:0060537,GO:0060828,GO:0061061,GO:0061351,GO:0061512,GO:0061842,GO:0065007,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0072001,GO:0072359,GO:0072657,GO:0072659,GO:0090102,GO:0097014,GO:0097447,GO:0097458,GO:0097542,GO:0097546,GO:0097730,GO:0097731,GO:0097732,GO:0097733,GO:0098588,GO:0098791,GO:0098858,GO:0098862,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902115,GO:1902636,GO:1990778,GO:2000785 Exons 6 Evalue 1.84e-41 EggNOG OGs 2AFZ8@1|root,2RYYR@2759|Eukaryota Description opsin transport Cds size 417 COG category S BRITE ko00000,ko03036
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682586744.140907-UTR-C-australica_Contig_101:10326..10449 1682586744.140907-UTR-C-australica_Contig_101:10326..10449 Chrysoparadoxa australica CS_1217 UTR C-australica_Contig_101 10327..10449 - 1682586744.1523147-UTR-C-australica_Contig_101:10537..10655 1682586744.1523147-UTR-C-australica_Contig_101:10537..10655 Chrysoparadoxa australica CS_1217 UTR C-australica_Contig_101 10538..10655 - 1682586744.1611755-UTR-C-australica_Contig_101:10726..10843 1682586744.1611755-UTR-C-australica_Contig_101:10726..10843 Chrysoparadoxa australica CS_1217 UTR C-australica_Contig_101 10727..10843 - 1682586744.215286-UTR-C-australica_Contig_101:11495..11499 1682586744.215286-UTR-C-australica_Contig_101:11495..11499 Chrysoparadoxa australica CS_1217 UTR C-australica_Contig_101 11496..11499 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682586744.171382-CDS-C-australica_Contig_101:10843..10939 1682586744.171382-CDS-C-australica_Contig_101:10843..10939 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_101 10844..10939 - 1682586744.1811104-CDS-C-australica_Contig_101:11016..11112 1682586744.1811104-CDS-C-australica_Contig_101:11016..11112 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_101 11017..11112 - 1682586744.1905417-CDS-C-australica_Contig_101:11200..11305 1682586744.1905417-CDS-C-australica_Contig_101:11200..11305 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_101 11201..11305 - 1682586744.199234-CDS-C-australica_Contig_101:11375..11495 1682586744.199234-CDS-C-australica_Contig_101:11375..11495 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_101 11376..11495 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_101.6.1
>prot_C-australica_Contig_101.6.1 ID=prot_C-australica_Contig_101.6.1|Name=mRNA_C-australica_Contig_101.6.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=139bp
MSDERVHISFSDEGHIQVLDTDVLKHSQEIEEECAAFVAKTLEFSSSVHG back to top mRNA from alignment at C-australica_Contig_101:10327..11499-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_101.6.1 ID=mRNA_C-australica_Contig_101.6.1|Name=mRNA_C-australica_Contig_101.6.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1173bp|location=Sequence derived from alignment at C-australica_Contig_101:10327..11499- (Chrysoparadoxa australica CS_1217)CGTG ATGTCTGACGAGCGCGTCCATATATCTTTCAGTGATGAGGGTCACA
TCCAGGTGCTGGACACTGATGTCCTCAAGCACAGCCAAGAGATTGAGGAA
GAATGCGCAGCCTTCGTAGCCAAG GTTGGTGGGCTGAGCAAGAGGCTAGC
AGGAGCTGAGCTAGGATACCTAACGCTCTCTTTCCCTACCCTAGACTCTG
GAGTTCAGCAGCTCAGTCCACGGCATAGTAGAGGTCTTGGGCGCCCACGC
AGACAAGATTGAGCGAGCAAAGCTCAGAGCCATTGGAGCTAGAAATAAG G
TGAAGCGCTTCAGCACCGGCTGTTATATAACCCCAAAGTCCACCTTTATT
GGAACACTTCCCTCACTTGATACTCTTTGCTCTGCAGGTGGATGGAGAGG
TGGACTACCGAGCGAGCCAGAAGAAGGCTTTGCAAGCCTTGATAGCGGAG
AAGATGGCAGAGCTGGATCGCTGTAACTTGCAG GTAAAACCTAAGCCATA
ACTCGCTGATGCCTTTCACCTTCCCACCCTGACTTGCGCACGCAACCTCC
GTCCCTTCAGTATAATGCTCTTGCGCAAGTGGAGGGAGAGCAGCAAGCAT
TGATAGACAAGCTGAGCAACAGTGAGACATTGGCAGAGACAGAGCTAAGG
AAATAA AGTTTGGAATTTAGAATAAATTTTGGCAGAGACCAAGCGCGCCT
GCCAAGTAACCCTCGCCTTCATCAGCTGAACACATGCTACGTGTTGTGCT
TGTGATCGTAATCGTCCCACCCT GTCAGTTCGGAGCTTGCTTGGTCAGTT
GGTTTGTTGGTTGGTTGGATCATGGCAGTGCAAATCACCCACCTTGATCA
TCGAGAATGCTGCTGTCCCACTCCCTGTTGGCGGTGCTGAAGTCAAGCGC
GGCCAGCTCTCTATCCACCACTTCTCTATCTGCATCGGCAGCCACAGTGT
CGTATCCAGCTG AACGACAGACATAACAAAAAGTCAAATTTGCAGTGGGC
AAGGGAGGCAGGGCAGGCTCATGGAGGTTAAGTTTGTGTGCGCTCACCTG
GGCCTGCCATGGCGTGCTTTTGCCGTATGGACTTGTAAAGCCAACTCCCC
GAAAGAGCTAGCCCCAGCCCAGCGATGTTGAGGATGCTTGGCTATGAGGG
GAACACAGGGAGTGGGTCCTGGG back to top Coding sequence (CDS) from alignment at C-australica_Contig_101:10327..11499-
>mRNA_C-australica_Contig_101.6.1 ID=mRNA_C-australica_Contig_101.6.1|Name=mRNA_C-australica_Contig_101.6.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=417bp|location=Sequence derived from alignment at C-australica_Contig_101:10327..11499- (Chrysoparadoxa australica CS_1217) back to top