mRNA_C-australica_Contig_101.6.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_101.6.1 vs. uniprot
Match: A0A836CJD0_9STRA (Intraflagellar transport protein 20 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD0_9STRA) HSP 1 Score: 154 bits (388), Expect = 1.140e-43 Identity = 79/130 (60.77%), Postives = 103/130 (79.23%), Query Frame = 2 Query: 11 DERVHISFSDEGHIQVLDTDVLKHSQEIEEECAAFVAKTLEFSSSVHGIVEVLGAHADKIERAKLRAIGARNKVDGEVDYRASQKKALQALIAEKMAELDRCNLQYNALAQVEGEQQALIDKLSNSETLA 400 +E+V +SF +E ++VLD DV KHS+E+EE C AF K F+++VHGIV VL AHA +IE+ KLRAIG RNKVDGE ++RA Q+ ALQ LI EKM+ELDR N+QY +L +VE EQQALI++LSNSE++A Sbjct: 7 EEKVQVSFDEECRVRVLDPDVFKHSEELEENCKAFATKMQAFNAAVHGIVAVLDAHASRIEKQKLRAIGMRNKVDGEAEHRARQRMALQVLIKEKMSELDRNNVQYQSLLRVEAEQQALIERLSNSESVA 136
BLAST of mRNA_C-australica_Contig_101.6.1 vs. uniprot
Match: D7FRA8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRA8_ECTSI) HSP 1 Score: 141 bits (356), Expect = 6.370e-39 Identity = 77/133 (57.89%), Postives = 99/133 (74.44%), Query Frame = 2 Query: 11 DERVHISFSDEGHIQVLDTDVLKHSQEIEEECAAFVAKTLEFSSSVHGIVEVLGAHADKIERAKLRAIGARNKVDGEVDYRASQKKALQALIAEKMAELDRCNLQYNALAQVEGEQQALIDKLSNSETLAETE 409 D V ISF +E I+VLD + KHS+ +EEEC FV K EF++SVH IVEVL +A +I++ KLRAIG RNKV+GE++YR QK +LQ ++ EKM ELDR NLQY +L ++E EQ ALI++LSNSETL E E Sbjct: 4 DNGVQISFDEECRIRVLDPEQFKHSEMLEEECRGFVDKIREFNASVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRQKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSETLTEQE 136
BLAST of mRNA_C-australica_Contig_101.6.1 vs. uniprot
Match: A0A7S2W6I1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6I1_9STRA) HSP 1 Score: 137 bits (346), Expect = 1.490e-37 Identity = 73/129 (56.59%), Postives = 96/129 (74.42%), Query Frame = 2 Query: 5 MSDERVHISFSDEGHIQVLDTDVLKHSQEIEEECAAFVAKTLEFSSSVHGIVEVLGAHADKIERAKLRAIGARNKVDGEVDYRASQKKALQALIAEKMAELDRCNLQYNALAQVEGEQQALIDKLSNSE 391 M + RV I F +E ++VLD + KH++E+ E+C FV+K +FS +VH +V+VLGA ADKIER KLRAIG RN V+ EV+ R S+K+ALQ+ I EKMAEL+R N QYN+L +E EQ ALI+KLSN E Sbjct: 1 MEENRVPICFDEESRVRVLDPEKFKHTEELAEQCTGFVSKIQDFSGTVHVLVDVLGAQADKIEREKLRAIGQRNMVESEVENRESKKRALQSQINEKMAELERFNKQYNSLVNLEAEQLALIEKLSNHE 129
BLAST of mRNA_C-australica_Contig_101.6.1 vs. uniprot
Match: A0A6V2PVC6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2PVC6_HETAK) HSP 1 Score: 129 bits (323), Expect = 4.210e-34 Identity = 70/129 (54.26%), Postives = 93/129 (72.09%), Query Frame = 2 Query: 11 DERVHISFSDEGHIQVLDTDVLKHSQEIEEECAAFVAKTLEFSSSVHGIVEVLGAHADKIERAKLRAIGARNKVDGEVDYRASQKKALQALIAEKMAELDRCNLQYNALAQVEGEQQALIDKLSNSETL 397 DE+V ISF DE I+VLD + KH++E+E EC FV K +F S+VH +VEVL A +IE AKL+AIG RN+V+GE + R Q+ AL +IAEK AELDR LQY +L VE EQ ALI+KL+N++++ Sbjct: 2 DEKVEISFDDEYKIRVLDAEKFKHTEELERECTDFVKKIQDFHSNVHSLVEVLDKQAKRIEHAKLKAIGQRNQVEGERENRERQRIALNTMIAEKKAELDRYTLQYQSLKGVEAEQLALIEKLTNNDSI 130
BLAST of mRNA_C-australica_Contig_101.6.1 vs. uniprot
Match: A0A7S2BU93_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BU93_9STRA) HSP 1 Score: 125 bits (314), Expect = 1.790e-32 Identity = 71/131 (54.20%), Postives = 94/131 (71.76%), Query Frame = 2 Query: 2 VMSDERVHISFSDEGHIQVLDTDVLKHSQEIEEECAAFVAKTLEFSSSVHGIVEVLGAHADKIERAKLRAIGARNKVDGEVDYRASQKKALQALIAEKMAELDRCNLQYNALAQVEGEQQALIDKLSNSET 394 V +++V+I F DE I+VL + KH++E+ E+C AFV K +FS +VH +VEVL A A KIE KL+AIG RN V+ E + RA ++ ALQ+ I EKMAELDR QY +LA+VE EQ ALI+KLSN+ET Sbjct: 22 VDDEKKVNICFDDESRIRVLSPEKFKHTEELAEQCTAFVNKIEDFSGTVHVLVEVLDAQAKKIELEKLKAIGQRNMVESETENRARRQLALQSQINEKMAELDRYAKQYQSLARVEAEQLALIEKLSNNET 152
BLAST of mRNA_C-australica_Contig_101.6.1 vs. uniprot
Match: A0A7S2V367_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V367_9STRA) HSP 1 Score: 123 bits (308), Expect = 7.630e-32 Identity = 65/129 (50.39%), Postives = 95/129 (73.64%), Query Frame = 2 Query: 5 MSDERVHISFSDEGHIQVLDTDVLKHSQEIEEECAAFVAKTLEFSSSVHGIVEVLGAHADKIERAKLRAIGARNKVDGEVDYRASQKKALQALIAEKMAELDRCNLQYNALAQVEGEQQALIDKLSNSE 391 M ++V ISF D+ I+VLD++ KH++E+E+EC FV K F+++VH +VEVL A A +IE AKL+AIG RN+V+GE ++R Q+ AL LIAEK AELDR LQ+ +L VE EQ A++++L+N++ Sbjct: 1 MDPDKVSISFDDDYRIRVLDSEKYKHTEELEKECKEFVQKIQTFNTTVHTLVEVLDAQAKRIENAKLKAIGQRNQVEGEREHRERQRIALNTLIAEKKAELDRYTLQHQSLVIVEAEQAAMVERLTNND 129
BLAST of mRNA_C-australica_Contig_101.6.1 vs. uniprot
Match: A0A7S2GG26_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GG26_9STRA) HSP 1 Score: 118 bits (295), Expect = 7.500e-30 Identity = 61/128 (47.66%), Postives = 90/128 (70.31%), Query Frame = 2 Query: 8 SDERVHISFSDEGHIQVLDTDVLKHSQEIEEECAAFVAKTLEFSSSVHGIVEVLGAHADKIERAKLRAIGARNKVDGEVDYRASQKKALQALIAEKMAELDRCNLQYNALAQVEGEQQALIDKLSNSE 391 +D++V+I F DE I+VL + H++E+ E+C AFV K +FS +VH +VE+L + A IE KLR IG RN+V+ E+D+R+ Q+ ALQA IAEK AEL+RC+ Y++L ++E EQ L+ SNS+ Sbjct: 7 NDDKVNICFDDECKIRVLSPEKFDHTKELAEQCTAFVNKIADFSDTVHVLVEILDSQAKMIETEKLRTIGQRNRVESEMDHRSRQQLALQAQIAEKKAELERCSKHYDSLVRIEAEQNKLLKNFSNSD 134
BLAST of mRNA_C-australica_Contig_101.6.1 vs. uniprot
Match: A0A7S1CRI3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CRI3_9STRA) HSP 1 Score: 113 bits (282), Expect = 5.460e-28 Identity = 63/127 (49.61%), Postives = 87/127 (68.50%), Query Frame = 2 Query: 11 DERVHISFSDEGHIQVLDTDVLKHSQEIEEECAAFVAKTLEFSSSVHGIVEVLGAHADKIERAKLRAIGARNKVDGEVDYRASQKKALQALIAEKMAELDRCNLQYNALAQVEGEQQALIDKLSNSE 391 D V I+F D+ ++VL+ D ++ +EE C+ FV K F+++VH +VEVL A IE+ KLRAIGARN + E + R +KK ++ALIAEK A LDR QY +L +VEGEQ+ALI+KLSN+E Sbjct: 2 DSNVTITFDDKYRVRVLEADKFDQTRALEEACSTFVQKIEAFNATVHSLVEVLSTSAAAIEKEKLRAIGARNLSEAEPETRERRKKQIRALIAEKRAALDRLQRQYESLEKVEGEQRALIEKLSNNE 128
BLAST of mRNA_C-australica_Contig_101.6.1 vs. uniprot
Match: F0Y6Q5_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6Q5_AURAN) HSP 1 Score: 109 bits (273), Expect = 1.090e-26 Identity = 62/125 (49.60%), Postives = 88/125 (70.40%), Query Frame = 2 Query: 26 ISFSDEGHIQVLDTDVLKHSQEIEEECAAFVAKTL---EFSSSVHGIVEVLGAHADKIERAKLRAIGARNKVDGEVDYRASQKKALQALIAEKMAELDRCNLQYNALAQVEGEQQALIDKLSNSE 391 ++F D+ I+VLD + H++E+ E +FVA EFS + GIVEVL ++A +IE+AKL+AIG RN+V E + R ++ALQA+IAEK AEL+R Q+ +L+QVE EQ+AL+DKL NSE Sbjct: 1 VTFDDKYRIRVLDVEKYAHTEELSEASGSFVASAAPAPEFSQLITGIVEVLDSNAQRIEKAKLKAIGMRNRVLSERENRDQHRRALQAMIAEKTAELERYQTQHQSLSQVEAEQRALVDKLGNSE 125
BLAST of mRNA_C-australica_Contig_101.6.1 vs. uniprot
Match: F0WTS2_9STRA (Intraflagellar Transport Protein 20 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WTS2_9STRA) HSP 1 Score: 108 bits (270), Expect = 3.730e-26 Identity = 61/124 (49.19%), Postives = 82/124 (66.13%), Query Frame = 2 Query: 23 HISFSDEGHIQVLDTDVLKHSQEIEEECAAFVAKTLEFSSSVHGIVEVLGAHADKIERAKLRAIGARNKVDGEVDYRASQKKALQALIAEKMAELDRCNLQYNALAQVEGEQQALIDKLSNSET 394 HISF DE + L+ D + H+QE+E E FV K EF + G+++VL A +IER KL+AIG RNKV+ E++ R QK + LI EK L+R NLQY +L +V EQQAL++KLSN+ET Sbjct: 10 HISFDDEYRLHALEKDQISHTQELEVESNQFVTKVDEFHEIIKGVLQVLEAQEQRIEREKLKAIGERNKVESELENRNRQKGIMLVLIKEKETXLERYNLQYESLFKVLEEQQALMEKLSNNET 133 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_101.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_101.6.1 >prot_C-australica_Contig_101.6.1 ID=prot_C-australica_Contig_101.6.1|Name=mRNA_C-australica_Contig_101.6.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=139bp MSDERVHISFSDEGHIQVLDTDVLKHSQEIEEECAAFVAKTLEFSSSVHGback to top mRNA from alignment at C-australica_Contig_101:10327..11499- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_101.6.1 ID=mRNA_C-australica_Contig_101.6.1|Name=mRNA_C-australica_Contig_101.6.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1173bp|location=Sequence derived from alignment at C-australica_Contig_101:10327..11499- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_101:10327..11499- >mRNA_C-australica_Contig_101.6.1 ID=mRNA_C-australica_Contig_101.6.1|Name=mRNA_C-australica_Contig_101.6.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=417bp|location=Sequence derived from alignment at C-australica_Contig_101:10327..11499- (Chrysoparadoxa australica CS_1217)back to top |