mRNA_C-australica_Contig_101.17.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_101.17.1
Unique NamemRNA_C-australica_Contig_101.17.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_101.17.1 vs. uniprot
Match: D8LKE1_ECTSI (Similar to retinitis pigmentosa GTPase regulator n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKE1_ECTSI)

HSP 1 Score: 414 bits (1065), Expect = 1.070e-129
Identity = 206/401 (51.37%), Postives = 268/401 (66.83%), Query Frame = 3
Query:   63 ATADDTPDQDKDKQQGGGVCRSVRTLPKQVDLQDW--EGEI-AEVAAGQTHSIARSKSGQVLLWGFFNGIPYPSPTLLTMRIPLPCIQIACGKKHTLALLEGGFVTSFGCGYFGQLGHGDNISYKDPCLILRLDPQRIDDKAVQVSAGAFHSAALMESGRIFQWGFNRYGQCGNGHKENTISSPLPVCLDHLAAPGSDMGKPVSVCCGRHHSALLTSTGRVYSWGSAMFGKLGQADPSKLVLKPQEVRAFSSKPVRAIAGGDFHMLAVTVDGRCYSWGHGGCGQCGHGVLLHVRQPRCIEALRGVSIKEVVCGTWWSMAVTDDGSVYAWGSADGGWTGLDQPVAPQVLQTDSPQSRCSDSVCLFDSSHNELVPTLVKSLAPYVVSQVACGAGHSLAIATLR 1256
            ATA DT  Q   + +   +C SV+  PK V L  +  +G+  A  AAG  HSI R+  G++  WG  +G  +P PT +  +IPLPCI++ CG+KHT+AL++GGFV S+G GYFGQLGHGDN SY+ P L+ RLDPQR+ ++ VQV+ G +HSA   ++GR+F WGFNRYGQCGNG K+NT+  P  V L  +  PG+ +G+   V CGRHHSAL+T  G +Y+WG+  FGKLG  D  K V  PQEV  FS KP+   A GDFHM+A++     +SWG+G  GQ GHG LLH+R PR + +L+ V + +VVCG WWSMA+T DG  YAWGSADGGWTGL +P   +V+       R  ++   FDS+HN  VP LV SLAPY V QV CG GH+L +A  R
Sbjct:   14 ATASDTLAQQSKEPR---ICASVQETPKAVPLDRFVKKGDSPAFAAAGANHSILRTSEGKLFRWGVEDGDVHPFPTGVCTQIPLPCIEVCCGRKHTVALMKGGFVMSWGTGYFGQLGHGDNASYRHPRLLRRLDPQRLGERVVQVACGGYHSAVATDAGRVFTWGFNRYGQCGNGSKDNTVPEPSLVDLSRVT-PGA-VGEVPKVLCGRHHSALVTRGGALYTWGACSFGKLGLQDAEKTVCIPQEVTFFSDKPLVQAAAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRMPRRVSSLQEVPVAQVVCGPWWSMAITVDGYCYAWGSADGGWTGLTRPPGLRVVDPGPSADRAVETQS-FDSTHNVHVPALVYSLAPYKVLQVGCGGGHTLVVAKRR 408          
BLAST of mRNA_C-australica_Contig_101.17.1 vs. uniprot
Match: K8Z8W0_NANGC (Hect domain and rld 4 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8W0_NANGC)

HSP 1 Score: 343 bits (880), Expect = 1.350e-107
Identity = 180/429 (41.96%), Postives = 253/429 (58.97%), Query Frame = 3
Query:   30 CGYNWFRQLGPATADDTPDQD-----KDKQQGGGVC-------------RSVRTLPKQVDLQDW----EGEIAEVAAGQTHSIARSKSGQVLLWGFFNGIPYPSPTLLTMRIPLPCIQIACGKKHTLALLEGGFVTSFGCGYFGQLGHGDNISYKDPCLILRLDPQRID-DKAVQVSAGAFHSAALMESGRIFQWGFNRYGQCGNGHKENTISSPLPVCLDHLAAPGSDMGKPVSVCCGRHHSALLTSTGRVYSWGSAMFGKLGQADPSKLVLKPQEVRAFSSKPVRAIAGGDFHMLAVTVDGRCYSWGHGGCGQCGHGVLLHVRQPRCIEALRGVSIKEVVCGTWWSMAVTDDGSVYAWGSADGGWTGLDQPVAPQVLQTDSPQSRCSDSVCLFDSSHNELVPTLVKSLAPYVVSQVACGAGHSLAIA 1247
            CG N F QLGP  ++  P Q      +    G G               +SV  LP+ + L+ +    +G + ++A G T +IA +  G    WG  NG  YP P+ +++ +PL C+Q++CG+KH LAL+EGGFVTS+G GYFGQLG GDN+S   P LI  LDP R+  D+ V V+ G  HSA       +F +GFNRYGQ G G   N IS+P PV   +++  GS   +   + CGRHH+++LT  G+V+SWG++ FG+LG  DP K+V  P EV AF   P+ A+A GDFH+L + VDGR Y+WG+G  GQ G G  LH+R PR +E L G  I ++ CG WWSM VT+ G +Y WG  DGGW GL++      ++   P ++   + C FDS  N  +P +V +L+   V +V  G GH++ +A
Sbjct:   58 CGINSFFQLGPLVSE-CPSQSAGAAAQASDDGSGAIIQGQNIHFSSQEKKSVLHLPQPLALERYVAEEDGLVQDIACGATFTIALTSRGVPYQWGTVNGRAYPEPSRVSLGVPLRCLQVSCGRKHALALMEGGFVTSWGVGYFGQLGQGDNLSSDRPRLIHHLDPPRLGGDRVVAVACGGQHSAVHTAGQSVFCFGFNRYGQVGQGQACNKISTPRPV---NMSGIGSSQIR--QLVCGRHHTSVLTDKGQVFSWGASSFGRLGLPDPKKIVGLPTEVPAFRCCPLAALACGDFHVLGLGVDGRAYAWGYGSEGQGGLGATLHLRTPRPVEGLEGSRIAQIACGAWWSMVVTEAGRLYTWGYGDGGWLGLERASKLPYVEPCPPVTKYG-ATCSFDSDFNACLPAVVSTLSHLRVEKVVAGGGHTIIMA 479          
BLAST of mRNA_C-australica_Contig_101.17.1 vs. uniprot
Match: W7U0Q3_9STRA (Putative e3 ubiquitin-protein ligase herc4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0Q3_9STRA)

HSP 1 Score: 343 bits (880), Expect = 2.670e-107
Identity = 180/429 (41.96%), Postives = 253/429 (58.97%), Query Frame = 3
Query:   30 CGYNWFRQLGPATADDTPDQD-----KDKQQGGGVC-------------RSVRTLPKQVDLQDW----EGEIAEVAAGQTHSIARSKSGQVLLWGFFNGIPYPSPTLLTMRIPLPCIQIACGKKHTLALLEGGFVTSFGCGYFGQLGHGDNISYKDPCLILRLDPQRID-DKAVQVSAGAFHSAALMESGRIFQWGFNRYGQCGNGHKENTISSPLPVCLDHLAAPGSDMGKPVSVCCGRHHSALLTSTGRVYSWGSAMFGKLGQADPSKLVLKPQEVRAFSSKPVRAIAGGDFHMLAVTVDGRCYSWGHGGCGQCGHGVLLHVRQPRCIEALRGVSIKEVVCGTWWSMAVTDDGSVYAWGSADGGWTGLDQPVAPQVLQTDSPQSRCSDSVCLFDSSHNELVPTLVKSLAPYVVSQVACGAGHSLAIA 1247
            CG N F QLGP  ++  P Q      +    G G               +SV  LP+ + L+ +    +G + ++A G T +IA +  G    WG  NG  YP P+ +++ +PL C+Q++CG+KH LAL+EGGFVTS+G GYFGQLG GDN+S   P LI  LDP R+  D+ V V+ G  HSA       +F +GFNRYGQ G G   N IS+P PV   +++  GS   +   + CGRHH+++LT  G+V+SWG++ FG+LG  DP K+V  P EV AF   P+ A+A GDFH+L + VDGR Y+WG+G  GQ G G  LH+R PR +E L G  I ++ CG WWSM VT+ G +Y WG  DGGW GL++      ++   P ++   + C FDS  N  +P +V +L+   V +V  G GH++ +A
Sbjct:   12 CGINSFFQLGPLVSE-CPSQSAGAAAQASDDGSGAIIQGQNIHFSSQEKKSVLHLPQPLALERYVAEEDGLVQDIACGATFTIALTSRGVPYQWGTVNGRAYPEPSRVSLGVPLRCLQVSCGRKHALALMEGGFVTSWGVGYFGQLGQGDNLSSDRPRLIHHLDPPRLGGDRVVAVACGGQHSAVHTAGQSVFCFGFNRYGQVGQGQACNKISTPRPV---NMSGIGSSQIR--QLVCGRHHTSVLTDKGQVFSWGASSFGRLGLPDPKKIVGLPTEVPAFRCCPLAALACGDFHVLGLGVDGRAYAWGYGSEGQGGLGATLHLRTPRPVEGLEGSRIAQIACGAWWSMVVTEAGRLYTWGYGDGGWLGLERASKLPYVEPCPPVTKYG-ATCSFDSDFNACLPAVVSTLSHLRVEKVVAGGGHTIIMA 433          
BLAST of mRNA_C-australica_Contig_101.17.1 vs. uniprot
Match: A0A835Z434_9STRA (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z434_9STRA)

HSP 1 Score: 302 bits (774), Expect = 3.180e-94
Identity = 159/332 (47.89%), Postives = 203/332 (61.14%), Query Frame = 3
Query:  291 MRIPLPCIQIACGKKHTLALLEGGFVTSFGCGYFGQLGHGDNISYKDPCLILRLDPQRIDDKAVQVSAGAFHSAALMESGRIFQWGFNRYGQCGNGH-KENTISSPLPVCLDHLAAPGSDMGKPVSVCCGRHHSALLTSTGRVYSWGSAMFGKLGQADPSKLVLKPQEVRAFSSKPVRAI--AGGDFHMLAVTVDGRCYSWGHGGCGQCGHGVLLHVRQPRCIEALRGVSIKEVVCGTWWSMAVTDDGSVYAWGSADGGWTGLDQP------VAP-QVLQTDSPQSRCSDSVCLFDSSHNELVPTLVKSLAPYVVSQVACGAGHSLAIATLR 1256
            M +PL  +QIACG++H++AL+EGGFV ++G GYFGQLGHGDN S  +P L+ +L+PQ+I    V V+AG +HS A+  +GR F WGFNRYGQCG G   +  +S P  V L  L A G  +    +  CGRHH   + + G VY+WG+  FG+LG ADP K+   P EV A   + V  +  A G++H LA T  G  YSWG+G  GQCGHG   H+R PR +E L+G  + +V CG+ WSMAVT  G +YAWG ADGGWTGL  P      V P  V   DS     + S   FDS H  L+P  V SL    V  VACG GH+L +A  R
Sbjct:    1 MGVPLAAVQIACGRRHSVALMEGGFVMTWGIGYFGQLGHGDNASCTNPRLLHQLEPQQI----VSVAAGGYHSVAVTRAGRGFAWGFNRYGQCGVGDCADAVVSEPRAVALRELRARGEGVR---AAACGRHHCVAVGTGGGVYAWGAGGFGRLGVADPPKVAPYPVEVGALRGQRVAEVRVACGEYHNLARTERGAVYSWGYGLDGQCGHGGAQHLRTPRIVERLKGNPVVQVACGSLWSMAVTSTGHLYAWGCADGGWTGLQCPPGVLRCVEPGPVAALDSEAGAAASSARTFDSDHIVLLPERVASLPGVAVEAVACGGGHTLVLARQR 325          
BLAST of mRNA_C-australica_Contig_101.17.1 vs. uniprot
Match: A0A4D9DAH8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAH8_9STRA)

HSP 1 Score: 305 bits (780), Expect = 3.870e-93
Identity = 152/343 (44.31%), Postives = 211/343 (61.52%), Query Frame = 3
Query:  267 YPSPTLLTMRIPLPCIQIACGKKHTLALLEGGFVTSFGCGYFGQLGHGDNISYKDPCLILRLDPQRID-DKAVQVSAGAFHSAALMESGRIFQWGFNRYGQCGNGHKENTISSPLPVCLDHLAAPGSDMGKPVSVCCGRHHSALLTSTGRVYSWGSAMFGKLGQADPSKLVLKPQEVRAFSSKPVRAIAGGDFHMLAVTVDGRCYSWGHGGCGQCGHGVLLHVRQPRCIEALRGVSIKEVVCGTWWSMAVTDDGSV---------------YAWGSADGGWTGLDQPVAPQVLQTDSPQSRCSDSVCLFDSSHNELVPTLVKSLAPYVVSQVACGAGHSLAIA 1247
            YP P+ +++ +PL C+Q++CG+KH LAL+EGG+VTS+G GYFGQLG GDN+S   P LI  LDP R+  D+ V V+ G  HSA       +F +GFNRYGQ G G   N IS+P PV   +++  GS   +   + CGRHH+++LT  G+V+SWG++ FG+LG  DP K+V  P EV AF   P+ A+A GDFH+L + VDGR Y+WG+G  GQ G G  LH+R PR +E L G  I ++ CG WWSM VT+ G V               Y WG  DGGW GL++      ++   P ++   + C FDS  N  +P +V +L+   V +V  G GH++ +A
Sbjct:   28 YPEPSRVSLGVPLRCLQVSCGRKHALALMEGGYVTSWGVGYFGQLGQGDNLSSDRPRLIHHLDPPRLGGDRVVAVACGGQHSAVHTAGQSVFCFGFNRYGQVGQGQACNKISTPRPV---NMSGIGSSQIR--QLVCGRHHTSVLTDKGQVFSWGASSFGRLGLPDPKKIVGLPTEVPAFRCCPLAALACGDFHVLGLGVDGRAYAWGYGSEGQGGLGATLHLRTPRPVEGLEGSRIAQIACGAWWSMVVTEAGCVGGKGRGGWRGVLVRLYTWGYGDGGWLGLERASKLPYVEPCPPVTKYG-ATCSFDSDFNACLPAVVSTLSHLRVEKVVAGGGHTIILA 364          
BLAST of mRNA_C-australica_Contig_101.17.1 vs. uniprot
Match: A0A7S3GVQ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GVQ9_9STRA)

HSP 1 Score: 213 bits (541), Expect = 1.750e-61
Identity = 105/218 (48.17%), Postives = 143/218 (65.60%), Query Frame = 3
Query:  375 FGCGYFGQLGHGDNISYKDPCLILRLDPQRIDDKAVQVSAGAFHSAALMESGRIFQWGFNRYGQCGNG----HKENTISSPLPVCLDHLAAPGSDMGKPVSVCCGRHHSALLTSTGRVYSWGSAMFGKLGQADPSKLVLKPQEVRAFSSKPVRAIAGGDFHMLAVTVDGRCYSWGHGGCGQCGHGVLLHVRQPRCIEALRGVSIKEVVCGTWWSMAVT 1016
            +G GYFGQLGHGD+ S+  P +I  L+P+R+  K + V+ G  HS  + +SGR+F WG NR GQCG G     K +++  P PV   HLA  G+   K  S+  GR+HSA+L++TGRV++WG A FG+LG  D  K  L P EV AFS  PV  ++ GDFHMLA+T DG+ YSWG+G  GQ GH V+L+VR PR I+    + I++V CG  +S+ +T
Sbjct:    1 WGTGYFGQLGHGDDSSWDSPRMISVLEPKRLGAKVINVACGGSHSGVITDSGRVFMWGLNRSGQCGQGLSAKGKSDSVLEPRPVDFSHLANHGTLGVK--SLVLGRNHSAMLSTTGRVFTWGEAGFGRLGLNDVKKTQLIPAEVMAFSKNPVVTLSAGDFHMLALTQDGQVYSWGYGVDGQTGHCVMLNVRCPRRIDFFDTMHIRDVCCGAGYSLVLT 216          
BLAST of mRNA_C-australica_Contig_101.17.1 vs. uniprot
Match: A0A812WWZ6_SYMMI (Rcbtb2 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WWZ6_SYMMI)

HSP 1 Score: 178 bits (452), Expect = 3.230e-48
Identity = 102/248 (41.13%), Postives = 139/248 (56.05%), Query Frame = 3
Query:  543 WGFNRYGQCGNGHKENTISSPLPVCLDHLAAPGSDMGK--PVSVCCGRHHSALLTSTGRVYSWGSAMFGKLGQADPSKLVLKPQEVRAFSSKPVRAIAGGDFHMLAVTVDGRCYSWGHGGCGQCGHGVLLHVRQPRCIEAL-RGVSIKEVVCGTWWSMAVTDDGSVYAWGSADGGWTGL-----------DQPVAPQVLQTDSPQSRCSDSVCL--FDSSHNELVPTLVKSLAPYVVSQVACGAGHSL 1238
            WG NR GQ G G K  +I  P PV         +D+G+  P  + CGR+H+ LLT+ GRVYSWG+A FG+LG  D  K+   P+EV+ F +   + IA GDFH LA+  +G  +SWG+G  GQCG+G  ++VR PR I      V I+++ CG+ WS A+T  G++Y WG  DGGW G+           +QP  P    +D  +S    +V    FDS+ N L PT V   A   V    CGAGH++
Sbjct:    2 WGLNRNGQTGTGVKAESILEPRPV-------DRTDIGRKVPSQLVCGRNHTCLLTTEGRVYSWGAAGFGRLGVMDSRKIQHTPREVQQFRNITCQYIAAGDFHTLAIDSEGAVFSWGYGLEGQCGNGSTMNVRTPRQIVFPDEDVEIQDLTCGSSWSFALTTTGALYTWGYGDGGWLGICPPAELPYVESEQPPPPVPRGSDYKKSSYYYNVYTRSFDSTLNVLRPTPVAMAADRYVKWTRCGAGHAI 242          
BLAST of mRNA_C-australica_Contig_101.17.1 vs. uniprot
Match: I2CP66_NANGC (BTB domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP66_NANGC)

HSP 1 Score: 168 bits (425), Expect = 1.090e-41
Identity = 102/316 (32.28%), Postives = 152/316 (48.10%), Query Frame = 3
Query:  303 LPCIQIACGKKHTLALLEGGFVTSFGCGYFGQLGHGDNISYKDPCLILRLDPQRIDDKAVQVSAGAFHSAALMESGRIFQWGFNRYGQCGNGHKENTISSPLPVCLDHLAAPGSDMGKPVS-VCCGRHHSALLTSTGRVYSWGSAMFGKLGQADPSKLVLKPQEVRAFSSKPVRAIAGGDFHMLAVTVDGRCYSWGHGGCGQCGHGVLLHVRQPRCIEALRGVSIKEVVCGTWWSMAVTDDGSVYAWGSADGGWTGLDQPVAPQVLQTDSPQSRCSDSVCLFDSSHNELVPTLVKSLAPYVVSQVACGAGHSLAIA 1247
            L  +QIACG  HT+ L E   V S+G G  G+LGH DN     P L+  L  + I     QV+ G++H+AA+ ++G ++ WG   YG+ G+G   N +  P P  ++        +G+ V  + CG  H+A L + G VY WG    G  G  + ++    P+++ A     +  IA   FH  A+T DG  +SWG G  G+ G G   +   P C+E L+GV +K+V CG + S  VT+DG V  +G  + G  G                              N  VP LVK+L    + QV CG  H++ ++
Sbjct:   39 LTVVQIACGSGHTVVLTEDKDVWSWGRGDDGRLGHADNHWKYVPHLVSALTGKSIK----QVTCGSYHTAAISDTGALWTWGGGMYGKLGHG---NEVGHPAPCRVEAF------IGREVEQIACGSRHTAALLAGGEVYCWGDRENGVCGIGEAAEHQYLPKKLEALKGVKITQIAACGFHTAAITQDGALWSWGEGKFGRLGQGNEKNQVTPCCVEGLQGVRVKQVACGGFHSACVTEDGDVLTFGGGEHGQLG-------------------------HGDKTNRTVPCLVKALEGAGIVQVTCGWSHTVTLS 316          
BLAST of mRNA_C-australica_Contig_101.17.1 vs. uniprot
Match: Q17IM6_AEDAE (HECT-type E3 ubiquitin transferase n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q17IM6_AEDAE)

HSP 1 Score: 172 bits (437), Expect = 2.360e-41
Identity = 127/406 (31.28%), Postives = 180/406 (44.33%), Query Frame = 3
Query:   96 DKQQGGGVCRSVRTLPKQVDLQDWEGEIAEVAAGQTHSIARSKSGQV----------LLWGFFNGIPYPSPTLLTMRIPLPCIQIACGKKHTLALLEGGFVTSFGCGYFGQLGHGDNISYKDPCLILRLDPQRIDDKAVQVSAGAFHSAALMESGRIFQWGFNRYGQCGNGHKENTISSPLPVCLDHLAAPGSDMGKPVSVCCGRH--HSALLTSTGRVYSWGSAMFGKLGQADPSKLVLKPQEVRAFSSKPVRAIAGGDFHMLAVTVDGRCYSWGHGGCGQCGHGVLLHVRQPRCIEALRGVSIKEVVCGTWWSMAVTDDGSVYAWGSADGGWTGLDQPVAPQVLQTDSPQSRCSDSVCLFDSSHNELVPTLVKSLAPYVVSQVACGAGHSLAIATLREPSGKSK 1277
            DK+Q GG+  S   LP    +      I  +A G       S+ G++          L  G  N +P P    +  +  +  + +  G KH +AL   G V S+G G  G+LGHG+ ++ + P LI  L  +R+ D    ++ G+ HSAA+  SG ++ WG   YG+ G+G     +   L   L           + V V CG     +  LT  G V+SWG   FGKLG+   S+    P +V   +S  V  I  G    LA+T  G  ++WG G   + GHG   HVR+P  I+ LRG  +  V  G    +AVTD G VYAWG  D G  G    V  +                          P LV  L    V++VACG+ HS+A +  + PS K K
Sbjct: 2901 DKEQLGGLKGSKVKLPTYSSVLSQLKPI-HIAGGSKSLFIVSQDGKLYACGEGTNGRLGLGHNNNVPTPRQVPILNQYVVKKVAVHSGGKHAMALTLDGKVFSWGEGEDGKLGHGNRLTLEKPKLIESLRTKRVRD----IACGSSHSAAITSSGELYTWGLGEYGRLGHGDNCTQLKPKLVTTLQGH--------RVVQVACGSRDAQTLCLTEEGLVFSWGDGDFGKLGRGG-SEGCSVPHQVERLNSVGVMQIECGAQFSLALTKSGEVWTWGKGDYYRLGHGTDQHVRKPTPIQGLRGKKVIHVAVGALHCLAVTDSGQVYAWGDNDHGQQGSGNTVVNKK-------------------------PNLVLGLDGVFVNRVACGSSHSVAWSLPQNPSEKDK 3267          
BLAST of mRNA_C-australica_Contig_101.17.1 vs. uniprot
Match: A0A1S4F1D4_AEDAE (HECT-type E3 ubiquitin transferase n=1 Tax=Aedes aegypti TaxID=7159 RepID=A0A1S4F1D4_AEDAE)

HSP 1 Score: 172 bits (437), Expect = 2.360e-41
Identity = 127/406 (31.28%), Postives = 180/406 (44.33%), Query Frame = 3
Query:   96 DKQQGGGVCRSVRTLPKQVDLQDWEGEIAEVAAGQTHSIARSKSGQV----------LLWGFFNGIPYPSPTLLTMRIPLPCIQIACGKKHTLALLEGGFVTSFGCGYFGQLGHGDNISYKDPCLILRLDPQRIDDKAVQVSAGAFHSAALMESGRIFQWGFNRYGQCGNGHKENTISSPLPVCLDHLAAPGSDMGKPVSVCCGRH--HSALLTSTGRVYSWGSAMFGKLGQADPSKLVLKPQEVRAFSSKPVRAIAGGDFHMLAVTVDGRCYSWGHGGCGQCGHGVLLHVRQPRCIEALRGVSIKEVVCGTWWSMAVTDDGSVYAWGSADGGWTGLDQPVAPQVLQTDSPQSRCSDSVCLFDSSHNELVPTLVKSLAPYVVSQVACGAGHSLAIATLREPSGKSK 1277
            DK+Q GG+  S   LP    +      I  +A G       S+ G++          L  G  N +P P    +  +  +  + +  G KH +AL   G V S+G G  G+LGHG+ ++ + P LI  L  +R+ D    ++ G+ HSAA+  SG ++ WG   YG+ G+G     +   L   L           + V V CG     +  LT  G V+SWG   FGKLG+   S+    P +V   +S  V  I  G    LA+T  G  ++WG G   + GHG   HVR+P  I+ LRG  +  V  G    +AVTD G VYAWG  D G  G    V  +                          P LV  L    V++VACG+ HS+A +  + PS K K
Sbjct: 2985 DKEQLGGLKGSKVKLPTYSSVLSQLKPI-HIAGGSKSLFIVSQDGKLYACGEGTNGRLGLGHNNNVPTPRQVPILNQYVVKKVAVHSGGKHAMALTLDGKVFSWGEGEDGKLGHGNRLTLEKPKLIESLRTKRVRD----IACGSSHSAAITSSGELYTWGLGEYGRLGHGDNCTQLKPKLVTTLQGH--------RVVQVACGSRDAQTLCLTEEGLVFSWGDGDFGKLGRGG-SEGCSVPHQVERLNSVGVMQIECGAQFSLALTKSGEVWTWGKGDYYRLGHGTDQHVRKPTPIQGLRGKKVIHVAVGALHCLAVTDSGQVYAWGDNDHGQQGSGNTVVNKK-------------------------PNLVLGLDGVFVNRVACGSSHSVAWSLPQNPSEKDK 3351          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_101.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKE1_ECTSI1.070e-12951.37Similar to retinitis pigmentosa GTPase regulator n... [more]
K8Z8W0_NANGC1.350e-10741.96Hect domain and rld 4 (Fragment) n=1 Tax=Nannochlo... [more]
W7U0Q3_9STRA2.670e-10741.96Putative e3 ubiquitin-protein ligase herc4 n=1 Tax... [more]
A0A835Z434_9STRA3.180e-9447.89Regulator of chromosome condensation 1/beta-lactam... [more]
A0A4D9DAH8_9STRA3.870e-9344.31Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3GVQ9_9STRA1.750e-6148.17Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A812WWZ6_SYMMI3.230e-4841.13Rcbtb2 protein (Fragment) n=1 Tax=Symbiodinium mic... [more]
I2CP66_NANGC1.090e-4132.28BTB domain-containing protein (Fragment) n=1 Tax=N... [more]
Q17IM6_AEDAE2.360e-4131.28HECT-type E3 ubiquitin transferase n=1 Tax=Aedes a... [more]
A0A1S4F1D4_AEDAE2.360e-4131.28HECT-type E3 ubiquitin transferase n=1 Tax=Aedes a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_101contigC-australica_Contig_101:47670..50652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LKE1
PFAMsF-box,RCC1
Model size1891
Max annot lvl2759|Eukaryota
KEGG koko:K04575
KEGG Pathwayko05014,map05014
Hectar predicted targeting categoryother localisation
Exons11
Evalue3.05e-133
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota
Ec32 ortholog descriptionRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
Ec32 orthologEc-16_002650.1
Descriptionguanyl-nucleotide exchange factor activity
Cds size1290
COG categoryDZ
BRITEko00000,ko00001,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_101.17.1prot_C-australica_Contig_101.17.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_101 48696..50644 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586745.1957958-UTR-C-australica_Contig_101:47669..479421682586745.1957958-UTR-C-australica_Contig_101:47669..47942Chrysoparadoxa australica CS_1217UTRC-australica_Contig_101 47670..47942 -
1682586745.2097564-UTR-C-australica_Contig_101:48150..482511682586745.2097564-UTR-C-australica_Contig_101:48150..48251Chrysoparadoxa australica CS_1217UTRC-australica_Contig_101 48151..48251 -
1682586745.2178357-UTR-C-australica_Contig_101:48376..484541682586745.2178357-UTR-C-australica_Contig_101:48376..48454Chrysoparadoxa australica CS_1217UTRC-australica_Contig_101 48377..48454 -
1682586745.226233-UTR-C-australica_Contig_101:48554..486951682586745.226233-UTR-C-australica_Contig_101:48554..48695Chrysoparadoxa australica CS_1217UTRC-australica_Contig_101 48555..48695 -
1682586745.3109171-UTR-C-australica_Contig_101:50644..506521682586745.3109171-UTR-C-australica_Contig_101:50644..50652Chrysoparadoxa australica CS_1217UTRC-australica_Contig_101 50645..50652 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586745.236592-CDS-C-australica_Contig_101:48695..489901682586745.236592-CDS-C-australica_Contig_101:48695..48990Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 48696..48990 -
1682586745.2457623-CDS-C-australica_Contig_101:49153..492851682586745.2457623-CDS-C-australica_Contig_101:49153..49285Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 49154..49285 -
1682586745.25382-CDS-C-australica_Contig_101:49341..494571682586745.25382-CDS-C-australica_Contig_101:49341..49457Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 49342..49457 -
1682586745.267293-CDS-C-australica_Contig_101:49536..495661682586745.267293-CDS-C-australica_Contig_101:49536..49566Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 49537..49566 -
1682586745.275736-CDS-C-australica_Contig_101:49673..498421682586745.275736-CDS-C-australica_Contig_101:49673..49842Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 49674..49842 -
1682586745.2842293-CDS-C-australica_Contig_101:49931..500021682586745.2842293-CDS-C-australica_Contig_101:49931..50002Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 49932..50002 -
1682586745.2931316-CDS-C-australica_Contig_101:50088..504781682586745.2931316-CDS-C-australica_Contig_101:50088..50478Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 50089..50478 -
1682586745.3018014-CDS-C-australica_Contig_101:50557..506441682586745.3018014-CDS-C-australica_Contig_101:50557..50644Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 50558..50644 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_101.17.1

>prot_C-australica_Contig_101.17.1 ID=prot_C-australica_Contig_101.17.1|Name=mRNA_C-australica_Contig_101.17.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=430bp
MASAVLSCGYNWFRQLGPATADDTPDQDKDKQQGGGVCRSVRTLPKQVDL
QDWEGEIAEVAAGQTHSIARSKSGQVLLWGFFNGIPYPSPTLLTMRIPLP
CIQIACGKKHTLALLEGGFVTSFGCGYFGQLGHGDNISYKDPCLILRLDP
QRIDDKAVQVSAGAFHSAALMESGRIFQWGFNRYGQCGNGHKENTISSPL
PVCLDHLAAPGSDMGKPVSVCCGRHHSALLTSTGRVYSWGSAMFGKLGQA
DPSKLVLKPQEVRAFSSKPVRAIAGGDFHMLAVTVDGRCYSWGHGGCGQC
GHGVLLHVRQPRCIEALRGVSIKEVVCGTWWSMAVTDDGSVYAWGSADGG
WTGLDQPVAPQVLQTDSPQSRCSDSVCLFDSSHNELVPTLVKSLAPYVVS
QVACGAGHSLAIATLREPSGKSKDGSGGI*
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mRNA from alignment at C-australica_Contig_101:47670..50652-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_101.17.1 ID=mRNA_C-australica_Contig_101.17.1|Name=mRNA_C-australica_Contig_101.17.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2983bp|location=Sequence derived from alignment at C-australica_Contig_101:47670..50652- (Chrysoparadoxa australica CS_1217)
GTAAAGCTATGGCTTCTGCGGTGCTCTCTTGTGGTTACAATTGGTTTAGA CAGCTTGGACCCGCAACGGCAGACGATACCCCTGATCAGGACAAGGTAGC GAGCTCACACAGAAATGTATGCCGAGACGCAAGAGGCAGGAAATGACCTC CGTCCTCGCTTCGTTATTGAACAGGACAAGCAGCAGGGGGGTGGCGTTTG CCGCAGTGTGCGGACTCTGCCAAAGCAAGTGGACTTGCAGGATTGGGAAG GAGAGATAGCAGAGGTGGCAGCAGGACAAACGCATAGCATTGCAAGGAGC AAGTCGGGCCAGGTTCTGCTCTGGGGATTCTTCAATGGCATACCGTATCC CTCTCCCACACTGCTCACGATGCGAATCCCCCTCCCATGCATTCAAATAG CATGTGGGAAGAAGCACACGCTTGCTTTGCTGGAGGGTGGCTTTGTCACT TCCTTTGGTTGTGGGTACTTTGGCCAACTGGGCCATGGAGATAACATTAG CTACAAAGATCCTTGCCTTATCCTCAGGCTGGACCCCCAGCGCATTGACG ACAAAGCAGTGCAGGTGAGCGCAGCCACTGACCCCCTTCCCCACAACCCT CAACAACCCTCAACCGAAAGCACTTATCACTCGCTCTCCCATGCTGCCAG GTGTCTGCTGGAGCATTCCACTCGGCTGCATTGATGGAGTCGGGAAGGAT ATTCCAATGGGGCTTCAACAGGTCAGAGCAGCTCAAAACCTTGCTCACGT AAAGCTTCCAAATTCTCAAAAGACTCATGCTGGTCGTCAATCAATCCCTG TGAACGCCAGGTATGGTCAGTGCGGCAACGGCCACAAGGAGAACACCATC TCCTCCCCCCTCCCTGTTTGCCTGGATCACCTGGCTGCGCCTGGCTCGGA TATGGGCAAGCCAGTGTCAGTATGCTGCGGCCGCCATCATTCTGCACTGC TCACATCAACGGGACGTGTTTATAGCTGGGTGAGAGATTGATTGCACTAA TTGCTCTACCCCTTTGGCGGAAATGGCAGCTGTGCATGCCACTTCTAGAG ATATCTCCTCATGAAAGCAACCTCCTTAACTCTCAGGGGAGCGCAATGTT TGGAAAACTGGGGCAGGTGATGCTGTGCTGCCTTGTAACATGCTGAGCAC CTGGCTGACTGACAACTGACTCATCAATGCTCCCTCTCATCTCAGGCTGA CCCTTCCAAGCTGGTGCTCAAGCCGCAGGAAGTAAGAGCTTTCTCATCTA AGCCAGTGCGAGCAATTGCTGGAGGTGACTTCCACATGCTTGCTGTCACG GTGGATGGCAGGTGAGCTTGTAAGTGAGAGCTGCTTTTGTATTATTAGCC TGATTTGTGAGTGACAGGTGCTACTCTTGGGGGCACGGAGGGTGCGGCCA ATGCGGTCATGGTGTTCTGCTGCATGTCAGGCAACCCCGCTGCATAGAGG CTTTAAGGGGGGTCAGCATCAAGGAGGTGGTCTGCGGGACCTGGTGGAGG TAAGAAAACACGTAAAAAATGATCCCATGATGCGTTCTGCTACCAGCAAG ATGATATTACGTAATAAAAAAAACATCTGAAACTCGTGAATGCTGAAGTT GAATAGCCTAACTCTTTTGTTGAAACTGATAGAGGTATCCTCCCTCTCTC CCTCCCTCTTAGCATGGCTGTAACTGATGATGGATCAGTTTATGCGTGGG GGAGCGCTGACGGTGGCTGGACTGGACTGGACCAACCGGTAGCTCCACAG GTGCTGCAGACAGACAGCCCGCAGAGCAGATGCAGTGACAGCGTGTGCTT GTTTGACTCAAGTCACAATGAGCTGGTGCCAACGCTGGTGAAGAGCCTTG CGCCGTACGTTGTGAGCCAGGTGGCTTGTGGTGCTGGGCATTCACTTGCT ATTGCCACGCTCAGAGAGCCCTCTGGCAAAAGCAAAGATGGCAGTGGTGG CATTTGAGAGAGAGATAGATAGGGAGAGTACAGTTGGCATGGAAGATAGC TGCCCAGATACCTCTAAGTACCTAATTGGTAATCTACAAGAAGCATGGCC AGTAAGGCTGCTGAGGATGCTACTGTGGAGACTGGAGACCAGTCAAAGGT AAGTCATGACAAAGAACATCATGTTTTCGATGCATCTTCCAATCAAGCAA ACCTCCTTATCTGGCCACTTACCCCGCATCTATTGCCGTAAAGCGTAGTG TATGCCATTGGAAAGCAAGGCATGCGTTGTGATTCAGGAGCACAAAATCG GAGGAAGAAGCTTGGGCGGTGACCTGGTGAGCTGATGAGCTCCATCCCTC CCTTTGAACGTTGAATGTTTGATAATTCGAATGTTTTAATTTTACACGGG CTCACAATCATTCCCCCCCCCCTCTGACATGCGCATACCCATTTTGACCA GGCTGCATGCCTGGCTAGCTATGGGGAGCAACCTTACGGCACCCACACAA GATCAACCTCCATACATCGGTCCTGCCCAAAGCGGCATGTGCAGGGCTCC AGGTATGAAGTATAGAATATGCAGCACAGAGGTGCAGCTCCAGCAAGGCT AAGGCCACCACAGTGATGCTAGCAACCGCACCAAATTCCCCCCCATTTTT AATCTACAACTTTCAACTGCAGCACAGACATGTGCATGTCTATACATTTC TTCTGGCTTCCTGTTCCCAGTTGCTTGGTTCACTTTACTTACACATGCAG TCAAAATCAGGAAGATCATCCGGGTCAAGACCACCCCAACTTGGCTGCAG GAAAGAAGAGGAGAGGAGGTGGGGTAAGGCATCAGTCGCTTAGCATGCCA TTCACACTGGCTCTAGTGCTAGACGTACCGAGCTTGGCCTTCTCCAAGAT GAACTTGCCTGTATGGGAGCATTGGAGCATTGGAAGGAAGGGTCACTTAA GTTGCCAAGGCCAACAGCAGCACTAGCTGCACATGGTTCATTGAAACGAC GAATGCTAATCATATGCTTAGTTTTTTACCTTC
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Coding sequence (CDS) from alignment at C-australica_Contig_101:47670..50652-

>mRNA_C-australica_Contig_101.17.1 ID=mRNA_C-australica_Contig_101.17.1|Name=mRNA_C-australica_Contig_101.17.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1290bp|location=Sequence derived from alignment at C-australica_Contig_101:47670..50652- (Chrysoparadoxa australica CS_1217)
ATGGCTTCTGCGGTGCTCTCTTGTGGTTACAATTGGTTTAGACAGCTTGG
ACCCGCAACGGCAGACGATACCCCTGATCAGGACAAGGACAAGCAGCAGG
GGGGTGGCGTTTGCCGCAGTGTGCGGACTCTGCCAAAGCAAGTGGACTTG
CAGGATTGGGAAGGAGAGATAGCAGAGGTGGCAGCAGGACAAACGCATAG
CATTGCAAGGAGCAAGTCGGGCCAGGTTCTGCTCTGGGGATTCTTCAATG
GCATACCGTATCCCTCTCCCACACTGCTCACGATGCGAATCCCCCTCCCA
TGCATTCAAATAGCATGTGGGAAGAAGCACACGCTTGCTTTGCTGGAGGG
TGGCTTTGTCACTTCCTTTGGTTGTGGGTACTTTGGCCAACTGGGCCATG
GAGATAACATTAGCTACAAAGATCCTTGCCTTATCCTCAGGCTGGACCCC
CAGCGCATTGACGACAAAGCAGTGCAGGTGTCTGCTGGAGCATTCCACTC
GGCTGCATTGATGGAGTCGGGAAGGATATTCCAATGGGGCTTCAACAGGT
ATGGTCAGTGCGGCAACGGCCACAAGGAGAACACCATCTCCTCCCCCCTC
CCTGTTTGCCTGGATCACCTGGCTGCGCCTGGCTCGGATATGGGCAAGCC
AGTGTCAGTATGCTGCGGCCGCCATCATTCTGCACTGCTCACATCAACGG
GACGTGTTTATAGCTGGGGGAGCGCAATGTTTGGAAAACTGGGGCAGGCT
GACCCTTCCAAGCTGGTGCTCAAGCCGCAGGAAGTAAGAGCTTTCTCATC
TAAGCCAGTGCGAGCAATTGCTGGAGGTGACTTCCACATGCTTGCTGTCA
CGGTGGATGGCAGGTGCTACTCTTGGGGGCACGGAGGGTGCGGCCAATGC
GGTCATGGTGTTCTGCTGCATGTCAGGCAACCCCGCTGCATAGAGGCTTT
AAGGGGGGTCAGCATCAAGGAGGTGGTCTGCGGGACCTGGTGGAGCATGG
CTGTAACTGATGATGGATCAGTTTATGCGTGGGGGAGCGCTGACGGTGGC
TGGACTGGACTGGACCAACCGGTAGCTCCACAGGTGCTGCAGACAGACAG
CCCGCAGAGCAGATGCAGTGACAGCGTGTGCTTGTTTGACTCAAGTCACA
ATGAGCTGGTGCCAACGCTGGTGAAGAGCCTTGCGCCGTACGTTGTGAGC
CAGGTGGCTTGTGGTGCTGGGCATTCACTTGCTATTGCCACGCTCAGAGA
GCCCTCTGGCAAAAGCAAAGATGGCAGTGGTGGCATTTGA
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