mRNA_C-australica_Contig_101.16.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_101.16.1
Unique NamemRNA_C-australica_Contig_101.16.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_101.16.1 vs. uniprot
Match: A0A835Z468_9STRA (Protein yippee-like n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z468_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.130e-33
Identity = 62/139 (44.60%), Postives = 76/139 (54.68%), Query Frame = 1
Query:    1 MGRLFLRYLESQNLYSCCECGAHLSSNSQIISKNFQGKWGKAYLFDTVVNPWKEMAGLVNDLCNLYFGGLCDDDCTARPDLPLLPPCAPSSSSQGPFVKRTLTTGLHTVADIYCQGCQTLVGWKYENAYEESQKYKEGK 417
            MGR+F RYLE   +YSC ECG H ++   IIS+NF G+ G+A+LF+  VN                                          +QGP  KR L TG+HTVADIYC  CQ+LVGW+YE A+EESQKYKEGK
Sbjct:    1 MGRIFKRYLEGPQIYSCLECGTHFTTKQDIISENFHGRGGRAFLFNQAVNV-----------------------------------------TQGPLEKRMLITGMHTVADIYCVDCQSLVGWRYERAFEESQKYKEGK 98          
BLAST of mRNA_C-australica_Contig_101.16.1 vs. uniprot
Match: A0A1Y1IRS2_KLENI (Protein yippee-like n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IRS2_KLENI)

HSP 1 Score: 115 bits (289), Expect = 2.170e-30
Identity = 60/139 (43.17%), Postives = 75/139 (53.96%), Query Frame = 1
Query:    1 MGRLFLRYLESQNLYSCCECGAHLSSNSQIISKNFQGKWGKAYLFDTVVNPWKEMAGLVNDLCNLYFGGLCDDDCTARPDLPLLPPCAPSSSSQGPFVKRTLTTGLHTVADIYCQGCQTLVGWKYENAYEESQKYKEGK 417
            MGR+F +YL    +YSC  C  H + + +IISK FQG++G+AYLF++VVN                                          + GP   R LTTGLHTVADIYC  CQ ++GWKYE AY+ESQKYKEGK
Sbjct:   34 MGRIFRQYLNGPRIYSCSNCRCHSADHDEIISKQFQGRYGRAYLFNSVVNV-----------------------------------------TLGPKEDRHLTTGLHTVADIYCSCCQQILGWKYEQAYDESQKYKEGK 131          
BLAST of mRNA_C-australica_Contig_101.16.1 vs. uniprot
Match: A0A5B8MU59_9CHLO (Protein yippee-like n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MU59_9CHLO)

HSP 1 Score: 112 bits (280), Expect = 1.980e-29
Identity = 60/139 (43.17%), Postives = 72/139 (51.80%), Query Frame = 1
Query:    1 MGRLFLRYLESQNLYSCCECGAHLSSNSQIISKNFQGKWGKAYLFDTVVNPWKEMAGLVNDLCNLYFGGLCDDDCTARPDLPLLPPCAPSSSSQGPFVKRTLTTGLHTVADIYCQGCQTLVGWKYENAYEESQKYKEGK 417
            MGRLF +YL    +YSC  C  H S + +I+SK FQG+ G+AYLF+ VVN                                          + GP   R L TGLHTVADIYC  CQ ++GWKYE A+EESQKYKEGK
Sbjct:    1 MGRLFKQYLNGPRIYSCSNCRCHTSDHDEIVSKAFQGRHGRAYLFNNVVNV-----------------------------------------TLGPKEDRLLITGLHTVADIYCSCCQQVLGWKYEQAFEESQKYKEGK 98          
BLAST of mRNA_C-australica_Contig_101.16.1 vs. uniprot
Match: A0A7S0PYG5_9EUKA (Protein yippee-like n=2 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PYG5_9EUKA)

HSP 1 Score: 112 bits (279), Expect = 7.470e-29
Identity = 58/139 (41.73%), Postives = 74/139 (53.24%), Query Frame = 1
Query:    1 MGRLFLRYLESQNLYSCCECGAHLSSNSQIISKNFQGKWGKAYLFDTVVNPWKEMAGLVNDLCNLYFGGLCDDDCTARPDLPLLPPCAPSSSSQGPFVKRTLTTGLHTVADIYCQGCQTLVGWKYENAYEESQKYKEGK 417
            MGRLFL Y+E+++++ C ECG HL+++  IISK FQG+ G+AYLF  VVN                                          + GP   R L TGLH VADI+C  C T +GWKY  A+EE+QKYKEGK
Sbjct:    1 MGRLFLEYVEAEDVHCCAECGTHLAAHDTIISKAFQGRHGRAYLFSDVVNI-----------------------------------------NSGPTENRLLLTGLHVVADIFCNACDTRLGWKYVEAFEENQKYKEGK 98          
BLAST of mRNA_C-australica_Contig_101.16.1 vs. uniprot
Match: A0A7S3RC72_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RC72_9SPIT)

HSP 1 Score: 113 bits (283), Expect = 1.400e-28
Identity = 61/139 (43.88%), Postives = 74/139 (53.24%), Query Frame = 1
Query:    1 MGRLFLRYLESQNLYSCCECGAHLSSNSQIISKNFQGKWGKAYLFDTVVNPWKEMAGLVNDLCNLYFGGLCDDDCTARPDLPLLPPCAPSSSSQGPFVKRTLTTGLHTVADIYCQGCQTLVGWKYENAYEESQKYKEGK 417
            MGRLFLRY+E+  ++ C  CG HLSS+  I+SK FQG+ G+A+LF  VVN                                          ++GP  KR L TGLH VADIYC  C+T +GWKY  AYEE QKYKEGK
Sbjct:   11 MGRLFLRYVEADVVHCCTICGTHLSSHDHIVSKAFQGRHGRAFLFADVVNV-----------------------------------------NEGPPEKRLLLTGLHVVADIYCNACETRLGWKYLEAYEEGQKYKEGK 108          
BLAST of mRNA_C-australica_Contig_101.16.1 vs. uniprot
Match: A0A7S0WSD2_9CHLO (Protein yippee-like n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WSD2_9CHLO)

HSP 1 Score: 109 bits (273), Expect = 2.280e-28
Identity = 58/139 (41.73%), Postives = 72/139 (51.80%), Query Frame = 1
Query:    1 MGRLFLRYLESQNLYSCCECGAHLSSNSQIISKNFQGKWGKAYLFDTVVNPWKEMAGLVNDLCNLYFGGLCDDDCTARPDLPLLPPCAPSSSSQGPFVKRTLTTGLHTVADIYCQGCQTLVGWKYENAYEESQKYKEGK 417
            MGRLF +YL    +YSC  C  H + + +IISK+FQG+ G+A+LF  VVN                                          + GP   R L TGLHTVADIYC  CQ ++GWKYE A+EE+QKYKEGK
Sbjct:    1 MGRLFKQYLSGPRIYSCSNCRTHSADHDEIISKSFQGRHGRAFLFSNVVNV-----------------------------------------TLGPKEDRLLITGLHTVADIYCSCCQAVLGWKYEQAFEENQKYKEGK 98          
BLAST of mRNA_C-australica_Contig_101.16.1 vs. uniprot
Match: L8HJV6_ACACA (Protein yippee-like n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HJV6_ACACA)

HSP 1 Score: 108 bits (271), Expect = 4.710e-28
Identity = 59/139 (42.45%), Postives = 68/139 (48.92%), Query Frame = 1
Query:    1 MGRLFLRYLESQNLYSCCECGAHLSSNSQIISKNFQGKWGKAYLFDTVVNPWKEMAGLVNDLCNLYFGGLCDDDCTARPDLPLLPPCAPSSSSQGPFVKRTLTTGLHTVADIYCQGCQTLVGWKYENAYEESQKYKEGK 417
            MG+LF  YL    +Y C  C  HL+ +  IISK FQ + GKAYLFD VVN                                          + GP   R L TGLHTVAD++C  CQ  VGWKYE A+EESQKYKEGK
Sbjct:    1 MGKLFKSYLSGPGVYKCHSCDTHLAKHGDIISKAFQSRSGKAYLFDKVVNV-----------------------------------------TSGPKEDRILITGLHTVADVFCSDCQAYVGWKYEEAFEESQKYKEGK 98          
BLAST of mRNA_C-australica_Contig_101.16.1 vs. uniprot
Match: R1BYG5_EMIHU (Protein yippee-like (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BYG5_EMIHU)

HSP 1 Score: 107 bits (267), Expect = 1.130e-27
Identity = 56/136 (41.18%), Postives = 73/136 (53.68%), Query Frame = 1
Query:    1 MGRLFLRYLESQNLYSCCECGAHLSSNSQIISKNFQGKWGKAYLFDTVVNPWKEMAGLVNDLCNLYFGGLCDDDCTARPDLPLLPPCAPSSSSQGPFVKRTLTTGLHTVADIYCQGCQTLVGWKYENAYEESQKYK 408
            MGRLFLRY+E+++++ C  C  HL+++ Q++S+ F+G+ G A+LF  V+N        VND                                 GP  KR L TGLH VADIYC GC T +GWKY  AYEE QKYK
Sbjct:    1 MGRLFLRYIEAESVHCCALCATHLAAHDQVVSRQFRGRHGDAWLFGDVIN--------VND---------------------------------GPPEKRLLLTGLHVVADIYCNGCDTRLGWKYVEAYEEQQKYK 95          
BLAST of mRNA_C-australica_Contig_101.16.1 vs. uniprot
Match: A0A7S0I5S9_9EUKA (Protein yippee-like (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I5S9_9EUKA)

HSP 1 Score: 107 bits (268), Expect = 2.180e-27
Identity = 59/139 (42.45%), Postives = 70/139 (50.36%), Query Frame = 1
Query:    1 MGRLFLRYLESQNLYSCCECGAHLSSNSQIISKNFQGKWGKAYLFDTVVNPWKEMAGLVNDLCNLYFGGLCDDDCTARPDLPLLPPCAPSSSSQGPFVKRTLTTGLHTVADIYCQGCQTLVGWKYENAYEESQKYKEGK 417
            MGRLFL Y+E+  +Y C  C  HLS++  IISK FQG+ G+AYLF  VVN                                          + GP   R L TGLH VADIYC  C T +GWKY  A+EESQKYKEG+
Sbjct:    1 MGRLFLEYVEAPCVYVCLSCRTHLSAHDSIISKAFQGRHGRAYLFADVVNI-----------------------------------------NSGPTENRLLLTGLHVVADIYCNACDTRLGWKYVEAFEESQKYKEGR 98          
BLAST of mRNA_C-australica_Contig_101.16.1 vs. uniprot
Match: M2WVM1_GALSU (Protein yippee-like n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WVM1_GALSU)

HSP 1 Score: 107 bits (266), Expect = 2.690e-27
Identity = 58/139 (41.73%), Postives = 69/139 (49.64%), Query Frame = 1
Query:    1 MGRLFLRYLESQNLYSCCECGAHLSSNSQIISKNFQGKWGKAYLFDTVVNPWKEMAGLVNDLCNLYFGGLCDDDCTARPDLPLLPPCAPSSSSQGPFVKRTLTTGLHTVADIYCQGCQTLVGWKYENAYEESQKYKEGK 417
            MGRLF  YL    +Y C  C  HL+ +  I+SK FQG+ G+AYLF+ VVN                                          S GP  +R L TGLHTVADIYC  C T++GWKY  AYEESQ+YKE K
Sbjct:    1 MGRLFKTYLSGSTIYCCSTCKCHLAVHEDIMSKQFQGRHGRAYLFNNVVNI-----------------------------------------SLGPKEERVLITGLHTVADIYCNVCHTVIGWKYLEAYEESQRYKENK 98          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_101.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z468_9STRA2.130e-3344.60Protein yippee-like n=1 Tax=Tribonema minus TaxID=... [more]
A0A1Y1IRS2_KLENI2.170e-3043.17Protein yippee-like n=1 Tax=Klebsormidium nitens T... [more]
A0A5B8MU59_9CHLO1.980e-2943.17Protein yippee-like n=1 Tax=Chloropicon primus Tax... [more]
A0A7S0PYG5_9EUKA7.470e-2941.73Protein yippee-like n=2 Tax=Coccolithus braarudii ... [more]
A0A7S3RC72_9SPIT1.400e-2843.88Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S0WSD2_9CHLO2.280e-2841.73Protein yippee-like n=1 Tax=Pyramimonas obovata Ta... [more]
L8HJV6_ACACA4.710e-2842.45Protein yippee-like n=1 Tax=Acanthamoeba castellan... [more]
R1BYG5_EMIHU1.130e-2741.18Protein yippee-like (Fragment) n=1 Tax=Emiliania h... [more]
A0A7S0I5S9_9EUKA2.180e-2742.45Protein yippee-like (Fragment) n=1 Tax=Phaeocystis... [more]
M2WVM1_GALSU2.690e-2741.73Protein yippee-like n=1 Tax=Galdieria sulphuraria ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_101contigC-australica_Contig_101:47226..47693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog325452.fgenesh_scip_prom.46568.10451
PFAMsYippee-Mis18
Model size432
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.73e-30
EggNOG OGsKOG3399@1|root,KOG3399@2759|Eukaryota,3QFVY@4776|Peronosporales
DescriptionYippee zinc-binding/DNA-binding /Mis18, centromere assembly
Cds size432
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586745.152625-CDS-C-australica_Contig_101:47225..473751682586745.152625-CDS-C-australica_Contig_101:47225..47375Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 47226..47375 +
1682586745.1667714-CDS-C-australica_Contig_101:47411..476931682586745.1667714-CDS-C-australica_Contig_101:47411..47693Chrysoparadoxa australica CS_1217CDSC-australica_Contig_101 47412..47693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_101.16.1prot_C-australica_Contig_101.16.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_101 47226..47693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_101.16.1

>prot_C-australica_Contig_101.16.1 ID=prot_C-australica_Contig_101.16.1|Name=mRNA_C-australica_Contig_101.16.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=144bp
MGRLFLRYLESQNLYSCCECGAHLSSNSQIISKNFQGKWGKAYLFDTVVN
PWKEMAGLVNDLCNLYFGGLCDDDCTARPDLPLLPPCAPSSSSQGPFVKR
TLTTGLHTVADIYCQGCQTLVGWKYENAYEESQKYKEGKKLSI*
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mRNA from alignment at C-australica_Contig_101:47226..47693+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_101.16.1 ID=mRNA_C-australica_Contig_101.16.1|Name=mRNA_C-australica_Contig_101.16.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=468bp|location=Sequence derived from alignment at C-australica_Contig_101:47226..47693+ (Chrysoparadoxa australica CS_1217)
ATGGGTCGCTTGTTCTTGCGGTACTTGGAGAGCCAAAACCTTTACAGCTG CTGCGAGTGTGGAGCCCACCTCAGTAGCAATTCCCAGATCATTAGCAAGA ACTTCCAGGGCAAGTGGGGCAAGGCCTACCTCTTTGACACTGTGGTGAAT GTCTCGGAAGGTACGTGCCTTGGTTGATGAAACGAGCCGTGGAAGGAGAT GGCAGGGCTGGTAAATGATCTGTGTAACTTGTACTTTGGGGGGTTATGTG ATGACGACTGCACCGCTCGACCTGACCTCCCTCTGCTCCCTCCCTGTGCA CCTTCTTCCTCTTCACAAGGTCCCTTCGTGAAACGAACTCTAACAACTGG CCTGCATACGGTAGCCGACATATACTGCCAAGGTTGCCAAACGCTGGTCG GATGGAAGTATGAAAATGCTTACGAAGAGAGCCAAAAGTACAAAGAAGGT AAAAAACTAAGCATATGA
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Coding sequence (CDS) from alignment at C-australica_Contig_101:47226..47693+

>mRNA_C-australica_Contig_101.16.1 ID=mRNA_C-australica_Contig_101.16.1|Name=mRNA_C-australica_Contig_101.16.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=432bp|location=Sequence derived from alignment at C-australica_Contig_101:47226..47693+ (Chrysoparadoxa australica CS_1217)
ATGGGTCGCTTGTTCTTGCGGTACTTGGAGAGCCAAAACCTTTACAGCTG
CTGCGAGTGTGGAGCCCACCTCAGTAGCAATTCCCAGATCATTAGCAAGA
ACTTCCAGGGCAAGTGGGGCAAGGCCTACCTCTTTGACACTGTGGTGAAT
CCGTGGAAGGAGATGGCAGGGCTGGTAAATGATCTGTGTAACTTGTACTT
TGGGGGGTTATGTGATGACGACTGCACCGCTCGACCTGACCTCCCTCTGC
TCCCTCCCTGTGCACCTTCTTCCTCTTCACAAGGTCCCTTCGTGAAACGA
ACTCTAACAACTGGCCTGCATACGGTAGCCGACATATACTGCCAAGGTTG
CCAAACGCTGGTCGGATGGAAGTATGAAAATGCTTACGAAGAGAGCCAAA
AGTACAAAGAAGGTAAAAAACTAAGCATATGA
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