mRNA_C-australica_Contig_10087.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10087.1.1
Unique NamemRNA_C-australica_Contig_10087.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10087.1.1 vs. uniprot
Match: A0A2T5ZVJ9_9RHOB (Superfamily II DNA or RNA helicase n=3 Tax=Rhodobacterales TaxID=204455 RepID=A0A2T5ZVJ9_9RHOB)

HSP 1 Score: 540 bits (1391), Expect = 3.690e-183
Identity = 271/280 (96.79%), Postives = 273/280 (97.50%), Query Frame = 1
Query:    1 GAGALIVGSSNLSRSALTEGVEWNRRHFDRSDALPLTNARAAFENLLARPEVTDLTPDWIDSYEARRIAPLPKQSGVQAETPEDAPKPHAIQQEALHALAATRAKGYRAGLVVLATGLGKTFLAAFDSQPAARVLFVAHREEILTQAMAAFRAIRPKARLGRFGGGEKDFDADVLFASIQTLSRTQHLNRFAPDAFDYIIVDEFHHAAATTYRRIIDHFTPQFLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGIDRELLSPFKYFGVPDPVEYAQIP 840
            GAGALIVGSSNLSRSALTEGVEWN RHFDRSDALPLTNAR AFENLLARPEV DLTPDWIDSYE RRIAPLPKQSGV AETPEDAPKPHA QQEALHALAATRAKGYRAGLVVLATGLGKTFLAAFDSQPAARVLFVAHREEILTQAMAAFRAIRPKARLGRFGGGEKDF+ADVLFASIQTLSR QHLNRFAPDAFDYI+VDEFHHAAATTYRRIIDHFTPQFLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGIDRELLSPFKYFGVPDPVEYAQIP
Sbjct:  195 GAGALIVGSSNLSRSALTEGVEWNLRHFDRSDALPLTNARTAFENLLARPEVIDLTPDWIDSYETRRIAPLPKQSGVPAETPEDAPKPHATQQEALHALAATRAKGYRAGLVVLATGLGKTFLAAFDSQPAARVLFVAHREEILTQAMAAFRAIRPKARLGRFGGGEKDFNADVLFASIQTLSRAQHLNRFAPDAFDYIVVDEFHHAAATTYRRIIDHFTPQFLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGIDRELLSPFKYFGVPDPVEYAQIP 474          
BLAST of mRNA_C-australica_Contig_10087.1.1 vs. uniprot
Match: UPI0013E8DF4E (DUF3427 domain-containing protein n=1 Tax=Tropicibacter sp. LMIT003 TaxID=2267683 RepID=UPI0013E8DF4E)

HSP 1 Score: 513 bits (1322), Expect = 8.020e-173
Identity = 258/280 (92.14%), Postives = 264/280 (94.29%), Query Frame = 1
Query:    1 GAGALIVGSSNLSRSALTEGVEWNRRHFDRSDALPLTNARAAFENLLARPEVTDLTPDWIDSYEARRIAPLPKQSGVQAETPEDAPKPHAIQQEALHALAATRAKGYRAGLVVLATGLGKTFLAAFDSQPAARVLFVAHREEILTQAMAAFRAIRPKARLGRFGGGEKDFDADVLFASIQTLSRTQHLNRFAPDAFDYIIVDEFHHAAATTYRRIIDHFTPQFLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGIDRELLSPFKYFGVPDPVEYAQIP 840
            GAGALIVGSSNLSRSALTEGVEWN RHFDRSDALPL +AR AFE+LLARPEV +L+PDWIDSYE RR+ PLP QSGV  E PE APKPHAIQQEAL ALAATRAKGYRAGLVVLATGLGKTFLAAFDSQPA RVLFVAHREEILTQAM AFRAIRPKARLGRFGGGEKDFDADVLFASIQTLSR QHLNRFAPDAFDYI+VDEFHHAAA TYRRIIDHFTPQFLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGIDRELLSPFKYFGVPDPVEYAQIP
Sbjct:  195 GAGALIVGSSNLSRSALTEGVEWNLRHFDRSDALPLMSARNAFEDLLARPEVAELSPDWIDSYEVRRVVPLPTQSGVPEEEPEYAPKPHAIQQEALQALAATRAKGYRAGLVVLATGLGKTFLAAFDSQPAKRVLFVAHREEILTQAMEAFRAIRPKARLGRFGGGEKDFDADVLFASIQTLSRAQHLNRFAPDAFDYIVVDEFHHAAAATYRRIIDHFTPQFLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGIDRELLSPFKYFGVPDPVEYAQIP 474          
BLAST of mRNA_C-australica_Contig_10087.1.1 vs. uniprot
Match: A0A5P3A0W9_9RHOB (ATP-dependent RNA helicase RhlE n=3 Tax=Rhodobacterales TaxID=204455 RepID=A0A5P3A0W9_9RHOB)

HSP 1 Score: 504 bits (1299), Expect = 2.160e-169
Identity = 252/280 (90.00%), Postives = 263/280 (93.93%), Query Frame = 1
Query:    1 GAGALIVGSSNLSRSALTEGVEWNRRHFDRSDALPLTNARAAFENLLARPEVTDLTPDWIDSYEARRIAPLPKQSGVQAETPEDAPKPHAIQQEALHALAATRAKGYRAGLVVLATGLGKTFLAAFDSQPAARVLFVAHREEILTQAMAAFRAIRPKARLGRFGGGEKDFDADVLFASIQTLSRTQHLNRFAPDAFDYIIVDEFHHAAATTYRRIIDHFTPQFLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGIDRELLSPFKYFGVPDPVEYAQIP 840
            G+GALIVGSSNLSRSALT+GVEWN RHFD+SDALPLT ARAAFE+LLARP+VT L+P+WIDSYE RRIAP P  SGV  E PEDAPKPHAIQ EAL ALAATRAKGYRAGLVVLATGLGKTFLAAFDSQPAARVLFVAHREEILTQAM AFRA+RPKARLGRFGGGEKDFDADVLFASIQTLSR +HLNRF+ DAFDYI+VDEFHHAAA TYRRIIDHFTP FLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGIDRELLSPFKYFGVPDPVEYAQIP
Sbjct:  195 GSGALIVGSSNLSRSALTDGVEWNLRHFDKSDALPLTTARAAFEDLLARPDVTSLSPEWIDSYETRRIAPTPMTSGVPEEPPEDAPKPHAIQLEALAALAATRAKGYRAGLVVLATGLGKTFLAAFDSQPAARVLFVAHREEILTQAMEAFRAVRPKARLGRFGGGEKDFDADVLFASIQTLSRAEHLNRFSTDAFDYIVVDEFHHAAAATYRRIIDHFTPDFLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGIDRELLSPFKYFGVPDPVEYAQIP 474          
BLAST of mRNA_C-australica_Contig_10087.1.1 vs. uniprot
Match: UPI00147F5007 (DUF3427 domain-containing protein n=1 Tax=Ruegeria arenilitoris TaxID=1173585 RepID=UPI00147F5007)

HSP 1 Score: 504 bits (1297), Expect = 4.410e-169
Identity = 251/280 (89.64%), Postives = 262/280 (93.57%), Query Frame = 1
Query:    1 GAGALIVGSSNLSRSALTEGVEWNRRHFDRSDALPLTNARAAFENLLARPEVTDLTPDWIDSYEARRIAPLPKQSGVQAETPEDAPKPHAIQQEALHALAATRAKGYRAGLVVLATGLGKTFLAAFDSQPAARVLFVAHREEILTQAMAAFRAIRPKARLGRFGGGEKDFDADVLFASIQTLSRTQHLNRFAPDAFDYIIVDEFHHAAATTYRRIIDHFTPQFLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGIDRELLSPFKYFGVPDPVEYAQIP 840
            G GALIVGSSNLSRSALTEGVEWN RHFDRSDALPL +ARAAFE LLARPEV DL+PDW+DSYEARRIAPLP QSGV  E  ED P+PHAIQ+EAL ALAATRAKGYRAGLVVLATGLGKTFLAAFDSQPA RVLFVAHREEILTQAMAAFRA+RP ARLGRFGGG KDFDADVLFASIQTLSRT HL+RF+PD FDYI+VDEFHHAAATTYRR+IDHFTP+FLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGIDRELLSPF YFGVPDPVEYAQIP
Sbjct:  195 GTGALIVGSSNLSRSALTEGVEWNLRHFDRSDALPLRSARAAFEKLLARPEVVDLSPDWVDSYEARRIAPLPMQSGVHREADEDTPEPHAIQKEALQALAATRAKGYRAGLVVLATGLGKTFLAAFDSQPAKRVLFVAHREEILTQAMAAFRAVRPNARLGRFGGGVKDFDADVLFASIQTLSRTAHLHRFSPDNFDYIVVDEFHHAAATTYRRLIDHFTPRFLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGIDRELLSPFNYFGVPDPVEYAQIP 474          
BLAST of mRNA_C-australica_Contig_10087.1.1 vs. uniprot
Match: A0A4R3J2V3_9RHOB (Superfamily II DNA or RNA helicase n=1 Tax=Primorskyibacter sedentarius TaxID=745311 RepID=A0A4R3J2V3_9RHOB)

HSP 1 Score: 502 bits (1293), Expect = 1.750e-168
Identity = 251/280 (89.64%), Postives = 260/280 (92.86%), Query Frame = 1
Query:    1 GAGALIVGSSNLSRSALTEGVEWNRRHFDRSDALPLTNARAAFENLLARPEVTDLTPDWIDSYEARRIAPLPKQSGVQAETPEDAPKPHAIQQEALHALAATRAKGYRAGLVVLATGLGKTFLAAFDSQPAARVLFVAHREEILTQAMAAFRAIRPKARLGRFGGGEKDFDADVLFASIQTLSRTQHLNRFAPDAFDYIIVDEFHHAAATTYRRIIDHFTPQFLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGIDRELLSPFKYFGVPDPVEYAQIP 840
            GAGALIVGSSNLSRSALTEGVEWN RHFDRSDALPL +AR AFE+LLARPEVT+L PDWID YEARR+ P P QSG+  E PEDAPKPHAIQ EALHALAATRAKGYRAGLVVLATGLGKTFLAAFDSQPA R+LFVAHREEILTQAM AFRAIRPKARLGRF G  KDFDADVLFASIQTLSR QHLNRF PDAFD+I+VDEFHHAAA TYRRIIDHFTPQFLLGLTATPDR+DGGDLLGLCEENLVYECDLWSGIDRELLSPFKYFGVPDPVEYAQIP
Sbjct:  195 GAGALIVGSSNLSRSALTEGVEWNLRHFDRSDALPLMSARTAFEDLLARPEVTELFPDWIDGYEARRVVPPPTQSGLPDEAPEDAPKPHAIQSEALHALAATRAKGYRAGLVVLATGLGKTFLAAFDSQPAKRILFVAHREEILTQAMEAFRAIRPKARLGRFSGAGKDFDADVLFASIQTLSRRQHLNRFNPDAFDFIVVDEFHHAAAETYRRIIDHFTPQFLLGLTATPDRNDGGDLLGLCEENLVYECDLWSGIDRELLSPFKYFGVPDPVEYAQIP 474          
BLAST of mRNA_C-australica_Contig_10087.1.1 vs. uniprot
Match: UPI001480EFBE (DUF3427 domain-containing protein n=1 Tax=Ruegeria arenilitoris TaxID=1173585 RepID=UPI001480EFBE)

HSP 1 Score: 502 bits (1292), Expect = 3.700e-168
Identity = 250/280 (89.29%), Postives = 262/280 (93.57%), Query Frame = 1
Query:    1 GAGALIVGSSNLSRSALTEGVEWNRRHFDRSDALPLTNARAAFENLLARPEVTDLTPDWIDSYEARRIAPLPKQSGVQAETPEDAPKPHAIQQEALHALAATRAKGYRAGLVVLATGLGKTFLAAFDSQPAARVLFVAHREEILTQAMAAFRAIRPKARLGRFGGGEKDFDADVLFASIQTLSRTQHLNRFAPDAFDYIIVDEFHHAAATTYRRIIDHFTPQFLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGIDRELLSPFKYFGVPDPVEYAQIP 840
            GA ALIVGSSNLSRSALTEGVEWN RHFDRSDAL LT AR AFE LLARPEVTDL+PDW+DSYEARR+APLP Q+GVQ E  E+ PKPHAIQ+EAL ALAATRAKGYRAGLVVLATGLGKTFLAAFDSQPA RVLFVAHREEILTQAMAAFRAIRPKAR GRFGG EKDFDADVLFAS+QTLSRT HLNRF+P  FDYI+VDEFHHAAATTYRR+I+HFTPQFLLGLTATPDRSDGGDLLGLCEENLVYECD+WSGIDRELLSPFKYFGVPDPVEYAQIP
Sbjct:  212 GAAALIVGSSNLSRSALTEGVEWNLRHFDRSDALSLTAARTAFEKLLARPEVTDLSPDWVDSYEARRVAPLPTQTGVQVEASEEVPKPHAIQKEALQALAATRAKGYRAGLVVLATGLGKTFLAAFDSQPATRVLFVAHREEILTQAMAAFRAIRPKARFGRFGGVEKDFDADVLFASVQTLSRTVHLNRFSPTTFDYIVVDEFHHAAATTYRRMINHFTPQFLLGLTATPDRSDGGDLLGLCEENLVYECDVWSGIDRELLSPFKYFGVPDPVEYAQIP 491          
BLAST of mRNA_C-australica_Contig_10087.1.1 vs. uniprot
Match: A0A1M6M2P9_9RHOB (PLD-like domain-containing protein n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A1M6M2P9_9RHOB)

HSP 1 Score: 489 bits (1260), Expect = 9.730e-164
Identity = 242/280 (86.43%), Postives = 259/280 (92.50%), Query Frame = 1
Query:    1 GAGALIVGSSNLSRSALTEGVEWNRRHFDRSDALPLTNARAAFENLLARPEVTDLTPDWIDSYEARRIAPLPKQSGVQAETPEDAPKPHAIQQEALHALAATRAKGYRAGLVVLATGLGKTFLAAFDSQPAARVLFVAHREEILTQAMAAFRAIRPKARLGRFGGGEKDFDADVLFASIQTLSRTQHLNRFAPDAFDYIIVDEFHHAAATTYRRIIDHFTPQFLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGIDRELLSPFKYFGVPDPVEYAQIP 840
            GAGA+IVGSSNLSRSALTEGVEWN RHFDRSDA+PL  AR AF+ LL RPEVT+L+ +WIDSYE RR+ P+P +SGV  E PEDAPKPH IQ+EAL+ALA TRAKGYRAGLVVLATGLGKTFLAAFDSQPA R+LFVAHREEILTQAM AFRA+RPKARLGRFGGG+KDF ADVLFASIQTLSR QHL RFAPDAFDYI+VDEFHHAAA TYRRIIDHFTP+FLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGIDRELL+PFKYFGVPDPVEYAQIP
Sbjct:  178 GAGAMIVGSSNLSRSALTEGVEWNLRHFDRSDAVPLIAARNAFKGLLVRPEVTELSGEWIDSYETRRVNPMPIRSGVPEERPEDAPKPHDIQREALNALATTRAKGYRAGLVVLATGLGKTFLAAFDSQPATRILFVAHREEILTQAMEAFRAVRPKARLGRFGGGDKDFGADVLFASIQTLSRNQHLQRFAPDAFDYIVVDEFHHAAAATYRRIIDHFTPEFLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGIDRELLAPFKYFGVPDPVEYAQIP 457          
BLAST of mRNA_C-australica_Contig_10087.1.1 vs. uniprot
Match: UPI001C9885F0 (DUF3427 domain-containing protein n=1 Tax=Leisingera daeponensis TaxID=405746 RepID=UPI001C9885F0)

HSP 1 Score: 486 bits (1251), Expect = 5.400e-162
Identity = 244/280 (87.14%), Postives = 256/280 (91.43%), Query Frame = 1
Query:    1 GAGALIVGSSNLSRSALTEGVEWNRRHFDRSDALPLTNARAAFENLLARPEVTDLTPDWIDSYEARRIAPLPKQSGVQAETPEDAPKPHAIQQEALHALAATRAKGYRAGLVVLATGLGKTFLAAFDSQPAARVLFVAHREEILTQAMAAFRAIRPKARLGRFGGGEKDFDADVLFASIQTLSRTQHLNRFAPDAFDYIIVDEFHHAAATTYRRIIDHFTPQFLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGIDRELLSPFKYFGVPDPVEYAQIP 840
            GAGALIVGSSNLSRSALT+GVEWN RHFD+SDALPLT AR AFE LLARPEV  LT +WIDSYE RRI P P QSG+ AETPEDAP PH IQ EAL ALA+TR KGYRAGLVVLATGLGKTFLAAFDS+ A RVLFVAHREEILTQAM+AFRAIRPKARLGRFGGGEKDFDADVLFASIQTLSR +HL+RFA DAFDYI+VDEFHHAAA TYRR+IDHFTP FLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGI RELLSPF+YFGVPDPVEYAQIP
Sbjct:  215 GAGALIVGSSNLSRSALTQGVEWNLRHFDQSDALPLTAARTAFEELLARPEVAPLTSEWIDSYETRRITPKPLQSGIPAETPEDAPTPHTIQAEALAALASTRTKGYRAGLVVLATGLGKTFLAAFDSRTAGRVLFVAHREEILTQAMSAFRAIRPKARLGRFGGGEKDFDADVLFASIQTLSRAEHLHRFALDAFDYIVVDEFHHAAAATYRRVIDHFTPGFLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGIGRELLSPFRYFGVPDPVEYAQIP 494          
BLAST of mRNA_C-australica_Contig_10087.1.1 vs. uniprot
Match: A0A0P7YFG3_9RHOB (ATP-dependent helicase IRC3 (Fragment) n=1 Tax=Rhodobacteraceae bacterium HLUCCA08 TaxID=1666913 RepID=A0A0P7YFG3_9RHOB)

HSP 1 Score: 440 bits (1131), Expect = 2.090e-150
Identity = 224/278 (80.58%), Postives = 239/278 (85.97%), Query Frame = 1
Query:    7 GALIVGSSNLSRSALTEGVEWNRRHFDRSDALPLTNARAAFENLLARPEVTDLTPDWIDSYEARRIAPLPKQSGVQAETPEDAPKPHAIQQEALHALAATRAKGYRAGLVVLATGLGKTFLAAFDSQPAARVLFVAHREEILTQAMAAFRAIRPKARLGRFGGGEKDFDADVLFASIQTLSRTQHLNRFAPDAFDYIIVDEFHHAAATTYRRIIDHFTPQFLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGIDRELLSPFKYFGVPDPVEYAQIP 840
            GALIVGSSNLSRSALT+G+EWN RH D  D  PL  ARAAFE LLARPEVT+LTP  ID+YEARRIAPLP  SG   E PE AP PH +Q EAL AL ATRAKGY AGLVVLATGLGKTFLAAFDS  AARVLFVAHREEILTQAMAAFRA+RP+ARLGR+ G EKD +AD++FAS+QTL+R  HL RF P AFDYIIVDEFHHAAA TYRRIIDHF P FLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGIDR LL+PF YFGVPDPVEY+QIP
Sbjct:  110 GALIVGSSNLSRSALTDGIEWNLRHVDPVDPAPLLAARAAFEALLARPEVTELTPASIDAYEARRIAPLPTASGAPVEAPETAPIPHEVQAEALAALRATRAKGYGAGLVVLATGLGKTFLAAFDSADAARVLFVAHREEILTQAMAAFRAVRPRARLGRYSGEEKDAEADIVFASVQTLARNAHLTRFDPRAFDYIIVDEFHHAAAATYRRIIDHFQPGFLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGIDRGLLAPFHYFGVPDPVEYSQIP 387          
BLAST of mRNA_C-australica_Contig_10087.1.1 vs. uniprot
Match: A0A2M7ESZ4_9RHOB (Uncharacterized protein n=1 Tax=Rhodobacteraceae bacterium CG17_big_fil_post_rev_8_21_14_2_50_65_11 TaxID=1974083 RepID=A0A2M7ESZ4_9RHOB)

HSP 1 Score: 432 bits (1112), Expect = 5.070e-148
Identity = 221/279 (79.21%), Postives = 236/279 (84.59%), Query Frame = 1
Query:    7 GALIVGSSNLSRSALTEGVEWNRRHFDRSDALPLTNARAAFEN-LLARPEVTDLTPDWIDSYEARRIAPLPKQSGVQAETPEDAPKPHAIQQEALHALAATRAKGYRAGLVVLATGLGKTFLAAFDSQPAARVLFVAHREEILTQAMAAFRAIRPKARLGRFGGGEKDFDADVLFASIQTLSRTQHLNRFAPDAFDYIIVDEFHHAAATTYRRIIDHFTPQFLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGIDRELLSPFKYFGVPDPVEYAQIP 840
            GALIVGSSNL   ALT+G+EWN RH D  D  PL  ARAAFE  LLARPE T+LTP WID+YEARRIAPLP  SG   E PE AP PH IQ EAL AL ATRAKGY AGLVVLATGLGKTFLAAFDS  AARVLFVAHREEILTQAMAAFRA+RP+ARLGR+ G EKD +AD++FAS+QTL+R  HL RF P AFDYI+VDEFHHAAA TYRRIIDHF P FLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGIDR LL+PF YFGVPDPVEY+QIP
Sbjct:   86 GALIVGSSNLXXXALTDGIEWNMRHVDPVDPAPLLAARAAFEAALLARPEGTELTPAWIDAYEARRIAPLPTASGAPIEAPETAPTPHEIQAEALAALRATRAKGYGAGLVVLATGLGKTFLAAFDSADAARVLFVAHREEILTQAMAAFRAVRPRARLGRYNGEEKDAEADIVFASVQTLARNAHLTRFDPRAFDYIVVDEFHHAAAATYRRIIDHFQPGFLLGLTATPDRSDGGDLLGLCEENLVYECDLWSGIDRGLLAPFHYFGVPDPVEYSQIP 364          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10087.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2T5ZVJ9_9RHOB3.690e-18396.79Superfamily II DNA or RNA helicase n=3 Tax=Rhodoba... [more]
UPI0013E8DF4E8.020e-17392.14DUF3427 domain-containing protein n=1 Tax=Tropicib... [more]
A0A5P3A0W9_9RHOB2.160e-16990.00ATP-dependent RNA helicase RhlE n=3 Tax=Rhodobacte... [more]
UPI00147F50074.410e-16989.64DUF3427 domain-containing protein n=1 Tax=Ruegeria... [more]
A0A4R3J2V3_9RHOB1.750e-16889.64Superfamily II DNA or RNA helicase n=1 Tax=Primors... [more]
UPI001480EFBE3.700e-16889.29DUF3427 domain-containing protein n=1 Tax=Ruegeria... [more]
A0A1M6M2P9_9RHOB9.730e-16486.43PLD-like domain-containing protein n=2 Tax=Roseoba... [more]
UPI001C9885F05.400e-16287.14DUF3427 domain-containing protein n=1 Tax=Leisinge... [more]
A0A0P7YFG3_9RHOB2.090e-15080.58ATP-dependent helicase IRC3 (Fragment) n=1 Tax=Rho... [more]
A0A2M7ESZ4_9RHOB5.070e-14879.21Uncharacterized protein n=1 Tax=Rhodobacteraceae b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10087contigC-australica_Contig_10087:1..840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1305735.JAFT01000005_gene2376
PFAMsDUF3427,HIT,Helicase_C,Methyltransf_25,Mrr_cat,PLDc_2,ResIII
Model size840
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.74e-146
EggNOG OGsCOG1061@1|root,COG3886@1|root,COG1061@2|Bacteria,COG3886@2|Bacteria,1MV9F@1224|Proteobacteria
DescriptionType III restriction protein, res subunit
Cds size840
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586742.0183191-CDS-C-australica_Contig_10087:0..8401682586742.0183191-CDS-C-australica_Contig_10087:0..840Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10087 1..840 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10087.1.1prot_C-australica_Contig_10087.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10087 1..840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10087.1.1

>prot_C-australica_Contig_10087.1.1 ID=prot_C-australica_Contig_10087.1.1|Name=mRNA_C-australica_Contig_10087.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=280bp
GAGALIVGSSNLSRSALTEGVEWNRRHFDRSDALPLTNARAAFENLLARP
EVTDLTPDWIDSYEARRIAPLPKQSGVQAETPEDAPKPHAIQQEALHALA
ATRAKGYRAGLVVLATGLGKTFLAAFDSQPAARVLFVAHREEILTQAMAA
FRAIRPKARLGRFGGGEKDFDADVLFASIQTLSRTQHLNRFAPDAFDYII
VDEFHHAAATTYRRIIDHFTPQFLLGLTATPDRSDGGDLLGLCEENLVYE
CDLWSGIDRELLSPFKYFGVPDPVEYAQIP
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mRNA from alignment at C-australica_Contig_10087:1..840+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10087.1.1 ID=mRNA_C-australica_Contig_10087.1.1|Name=mRNA_C-australica_Contig_10087.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=840bp|location=Sequence derived from alignment at C-australica_Contig_10087:1..840+ (Chrysoparadoxa australica CS_1217)
GGCGCAGGCGCCCTGATCGTTGGATCTTCCAATCTGTCGCGGTCCGCGCT GACCGAAGGTGTCGAATGGAACCGGCGCCATTTCGACCGATCCGACGCCC TGCCTCTGACTAATGCTCGCGCAGCCTTCGAAAACCTTCTGGCCCGACCA GAGGTCACTGATCTCACGCCAGATTGGATCGATAGCTATGAGGCCCGCCG GATCGCGCCACTGCCAAAGCAATCCGGCGTGCAGGCAGAAACACCCGAAG ACGCGCCCAAGCCACATGCCATACAGCAAGAAGCTCTCCACGCGCTCGCC GCAACACGGGCCAAGGGCTATCGCGCCGGTTTGGTCGTCCTCGCAACCGG CCTCGGCAAAACCTTCCTTGCCGCATTCGACAGCCAGCCAGCGGCGCGCG TCCTGTTCGTCGCCCATCGCGAAGAAATCCTGACCCAAGCCATGGCTGCC TTTCGCGCCATCCGCCCCAAGGCGCGGCTGGGGCGTTTCGGCGGTGGCGA GAAAGACTTCGATGCCGACGTTCTCTTCGCCTCGATCCAAACGCTTTCGC GCACGCAGCATCTGAACCGCTTTGCGCCGGATGCTTTCGACTACATCATT GTGGATGAATTCCACCACGCCGCGGCGACGACATACCGCCGGATCATTGA TCACTTCACCCCGCAATTCCTTCTGGGCCTGACGGCGACACCGGACCGAA GCGATGGCGGCGATCTTCTGGGACTGTGCGAGGAAAACCTCGTTTACGAA TGTGATCTCTGGTCCGGTATCGACCGCGAATTGCTGTCCCCTTTCAAGTA TTTCGGCGTGCCCGACCCCGTCGAATACGCGCAGATCCCA
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Coding sequence (CDS) from alignment at C-australica_Contig_10087:1..840+

>mRNA_C-australica_Contig_10087.1.1 ID=mRNA_C-australica_Contig_10087.1.1|Name=mRNA_C-australica_Contig_10087.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=840bp|location=Sequence derived from alignment at C-australica_Contig_10087:1..840+ (Chrysoparadoxa australica CS_1217)
GGCGCAGGCGCCCTGATCGTTGGATCTTCCAATCTGTCGCGGTCCGCGCT
GACCGAAGGTGTCGAATGGAACCGGCGCCATTTCGACCGATCCGACGCCC
TGCCTCTGACTAATGCTCGCGCAGCCTTCGAAAACCTTCTGGCCCGACCA
GAGGTCACTGATCTCACGCCAGATTGGATCGATAGCTATGAGGCCCGCCG
GATCGCGCCACTGCCAAAGCAATCCGGCGTGCAGGCAGAAACACCCGAAG
ACGCGCCCAAGCCACATGCCATACAGCAAGAAGCTCTCCACGCGCTCGCC
GCAACACGGGCCAAGGGCTATCGCGCCGGTTTGGTCGTCCTCGCAACCGG
CCTCGGCAAAACCTTCCTTGCCGCATTCGACAGCCAGCCAGCGGCGCGCG
TCCTGTTCGTCGCCCATCGCGAAGAAATCCTGACCCAAGCCATGGCTGCC
TTTCGCGCCATCCGCCCCAAGGCGCGGCTGGGGCGTTTCGGCGGTGGCGA
GAAAGACTTCGATGCCGACGTTCTCTTCGCCTCGATCCAAACGCTTTCGC
GCACGCAGCATCTGAACCGCTTTGCGCCGGATGCTTTCGACTACATCATT
GTGGATGAATTCCACCACGCCGCGGCGACGACATACCGCCGGATCATTGA
TCACTTCACCCCGCAATTCCTTCTGGGCCTGACGGCGACACCGGACCGAA
GCGATGGCGGCGATCTTCTGGGACTGTGCGAGGAAAACCTCGTTTACGAA
TGTGATCTCTGGTCCGGTATCGACCGCGAATTGCTGTCCCCTTTCAAGTA
TTTCGGCGTGCCCGACCCCGTCGAATACGCGCAGATCCCA
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