mRNA_C-australica_Contig_10068.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10068.1.1
Unique NamemRNA_C-australica_Contig_10068.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_10068.1.1 vs. uniprot
Match: A0A2E5SP25_9GAMM (AMP nucleosidase n=1 Tax=Marinobacter sp. TaxID=50741 RepID=A0A2E5SP25_9GAMM)

HSP 1 Score: 509 bits (1311), Expect = 4.030e-179
Identity = 250/260 (96.15%), Postives = 251/260 (96.54%), Query Frame = 1 
Query:    1 MQETTINALVSPEGSLEILSNHEVNRLKDRSEGGLYRLFRQCALAVLNTGIETDDCKALMESHADFDVRLVPQPRGLKLELINAPGHAFVDGEMLRAIREHLFSVLRDIIYSHSIPQTAAGFRRDDPEDLTNYVFHILRNARVLQAGRQPDLVVCWGGHSIGHEEYQYSKDVGHQLGLRALSICTGCGPGAMKGPMKGATIGHAKQRVKNGRYIGITEPGIIGAEAPNPIVNELVIMPDIEKRLEAFVRCGHGVIVFPGG 780
            MQE TINALVSPEGSLEILSNHEVNRLKDRSEGGLYRLFRQCALAVLNTGIETDDCKALMES ADFDVRLVPQPRGLKLELINAP HA VDG MLRAIREHLFSVLRDIIYS+SIPQTAAGFRRDDPEDLTNYVFHILRNARVLQAGRQPDLVVCWGGHSIGH EYQYSKDVGHQLGLRALSICTGCGPGAMKGPMKGATIGHAKQRVKNGR IGITEPGI GAEAPNP VNELVIMPDIEKRLEAFVRCGHGVIVFPGG
Sbjct:    1 MQEMTINALVSPEGSLEILSNHEVNRLKDRSEGGLYRLFRQCALAVLNTGIETDDCKALMESXADFDVRLVPQPRGLKLELINAPAHAXVDGXMLRAIREHLFSVLRDIIYSYSIPQTAAGFRRDDPEDLTNYVFHILRNARVLQAGRQPDLVVCWGGHSIGHXEYQYSKDVGHQLGLRALSICTGCGPGAMKGPMKGATIGHAKQRVKNGRXIGITEPGIXGAEAPNPXVNELVIMPDIEKRLEAFVRCGHGVIVFPGG 260
[Close]
BLAST of mRNA_C-australica_Contig_10068.1.1 vs. uniprot
Match: A0A142FSE9_9GAMM (AMP nucleosidase n=62 Tax=Marinobacteraceae TaxID=2887365 RepID=A0A142FSE9_9GAMM)

HSP 1 Score: 509 bits (1310), Expect = 5.730e-179
Identity = 244/260 (93.85%), Postives = 252/260 (96.92%), Query Frame = 1 
Query:    1 MQETTINALVSPEGSLEILSNHEVNRLKDRSEGGLYRLFRQCALAVLNTGIETDDCKALMESHADFDVRLVPQPRGLKLELINAPGHAFVDGEMLRAIREHLFSVLRDIIYSHSIPQTAAGFRRDDPEDLTNYVFHILRNARVLQAGRQPDLVVCWGGHSIGHEEYQYSKDVGHQLGLRALSICTGCGPGAMKGPMKGATIGHAKQRVKNGRYIGITEPGIIGAEAPNPIVNELVIMPDIEKRLEAFVRCGHGVIVFPGG 780
            M E T+NALVSPEGSLEILSNHEVNRLKD+SEGGLYRLFRQCALAVLNTG+ETDDCK LME+HADFDVRLVPQPRGLKLELINAPGHAFVDGEMLRAIREHLFSVLRDI+YSHSIP T AGFRRD+PED+TN VFHILRNARVLQAGRQPDLVVCWGGHSI H+EYQYSKDVGHQLGLR LSICTGCGPGAMKGPMKGATIGHAKQRVKNGRYIGITEPGIIGAEAPNPIVNELVIMPDIEKRLEAFVRCGHGVIVFPGG
Sbjct:    1 MTEPTMNALVSPEGSLEILSNHEVNRLKDKSEGGLYRLFRQCALAVLNTGVETDDCKELMEAHADFDVRLVPQPRGLKLELINAPGHAFVDGEMLRAIREHLFSVLRDIVYSHSIPNTVAGFRRDNPEDITNLVFHILRNARVLQAGRQPDLVVCWGGHSISHDEYQYSKDVGHQLGLRGLSICTGCGPGAMKGPMKGATIGHAKQRVKNGRYIGITEPGIIGAEAPNPIVNELVIMPDIEKRLEAFVRCGHGVIVFPGG 260
[Close]
BLAST of mRNA_C-australica_Contig_10068.1.1 vs. uniprot
Match: R8B308_9GAMM (AMP nucleosidase n=22 Tax=Marinobacteraceae TaxID=2887365 RepID=R8B308_9GAMM)

HSP 1 Score: 499 bits (1284), Expect = 5.140e-175
Identity = 238/260 (91.54%), Postives = 253/260 (97.31%), Query Frame = 1 
Query:    1 MQETTINALVSPEGSLEILSNHEVNRLKDRSEGGLYRLFRQCALAVLNTGIETDDCKALMESHADFDVRLVPQPRGLKLELINAPGHAFVDGEMLRAIREHLFSVLRDIIYSHSIPQTAAGFRRDDPEDLTNYVFHILRNARVLQAGRQPDLVVCWGGHSIGHEEYQYSKDVGHQLGLRALSICTGCGPGAMKGPMKGATIGHAKQRVKNGRYIGITEPGIIGAEAPNPIVNELVIMPDIEKRLEAFVRCGHGVIVFPGG 780
            M ETTINALVSPEGSLEILSNHEVNRLKD+SEGGLYRLFRQCALAVLNTG+ETDDCK+LME+HADFDVRLVPQPRGLKLEL+NAP HAFVDG MLRAIREHLFSVLRDIIYS+SIP++A+GFRRDDP+D+TN +FHILRNARVLQAGRQPDLVVCWGGHSI  +EYQYSK+VGHQLGLRALSICTGCGPGAMKGPMKGATIGHAKQRVKNGRYIG+TEPGIIGAEAPNPIVNELVIMPDIEKRLEAFVR GHGVIVFPGG
Sbjct:    1 MTETTINALVSPEGSLEILSNHEVNRLKDKSEGGLYRLFRQCALAVLNTGVETDDCKSLMEAHADFDVRLVPQPRGLKLELVNAPAHAFVDGSMLRAIREHLFSVLRDIIYSYSIPESASGFRRDDPQDITNLIFHILRNARVLQAGRQPDLVVCWGGHSINQQEYQYSKEVGHQLGLRALSICTGCGPGAMKGPMKGATIGHAKQRVKNGRYIGLTEPGIIGAEAPNPIVNELVIMPDIEKRLEAFVRTGHGVIVFPGG 260
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BLAST of mRNA_C-australica_Contig_10068.1.1 vs. uniprot
Match: UPI001CC0C110 (nucleotide 5'-monophosphate nucleosidase PpnN n=1 Tax=Marinobacter sp. F4216 TaxID=2874281 RepID=UPI001CC0C110)

HSP 1 Score: 494 bits (1273), Expect = 2.420e-173
Identity = 237/260 (91.15%), Postives = 251/260 (96.54%), Query Frame = 1 
Query:    1 MQETTINALVSPEGSLEILSNHEVNRLKDRSEGGLYRLFRQCALAVLNTGIETDDCKALMESHADFDVRLVPQPRGLKLELINAPGHAFVDGEMLRAIREHLFSVLRDIIYSHSIPQTAAGFRRDDPEDLTNYVFHILRNARVLQAGRQPDLVVCWGGHSIGHEEYQYSKDVGHQLGLRALSICTGCGPGAMKGPMKGATIGHAKQRVKNGRYIGITEPGIIGAEAPNPIVNELVIMPDIEKRLEAFVRCGHGVIVFPGG 780
            M+E TINALVSPEGSLEILS+HEVNRLKDRSEGGLYRLFRQCALAVLNTG+ETDDCKALMESHADFDVRLVPQPRGLKLELINAP HAFVDGEMLRAIREHLFSVLRDI+Y +S+P+TA+GFRRD+PED+TN VFHILRNARVL+ GRQPDLVVCWGGHSIGHEEYQYSK+VGHQLGLR LSI TGCGPGAMKGPMKGATI HAKQR+KNGRY+GITEPGIIGAEAPNPIVNELVIMPDIEKRLEAFVR GHGVIVFPGG
Sbjct:    1 MREPTINALVSPEGSLEILSSHEVNRLKDRSEGGLYRLFRQCALAVLNTGVETDDCKALMESHADFDVRLVPQPRGLKLELINAPAHAFVDGEMLRAIREHLFSVLRDIVYLYSLPETASGFRRDNPEDITNLVFHILRNARVLEPGRQPDLVVCWGGHSIGHEEYQYSKEVGHQLGLRGLSIITGCGPGAMKGPMKGATIAHAKQRIKNGRYVGITEPGIIGAEAPNPIVNELVIMPDIEKRLEAFVRSGHGVIVFPGG 260
[Close]
BLAST of mRNA_C-australica_Contig_10068.1.1 vs. uniprot
Match: A0A5B0V9R4_9GAMM (AMP nucleosidase n=1 Tax=Marinobacter salinexigens TaxID=2919747 RepID=A0A5B0V9R4_9GAMM)

HSP 1 Score: 487 bits (1253), Expect = 2.650e-170
Identity = 234/260 (90.00%), Postives = 248/260 (95.38%), Query Frame = 1 
Query:    1 MQETTINALVSPEGSLEILSNHEVNRLKDRSEGGLYRLFRQCALAVLNTGIETDDCKALMESHADFDVRLVPQPRGLKLELINAPGHAFVDGEMLRAIREHLFSVLRDIIYSHSIPQTAAGFRRDDPEDLTNYVFHILRNARVLQAGRQPDLVVCWGGHSIGHEEYQYSKDVGHQLGLRALSICTGCGPGAMKGPMKGATIGHAKQRVKNGRYIGITEPGIIGAEAPNPIVNELVIMPDIEKRLEAFVRCGHGVIVFPGG 780
            MQE T NALVSPEGSLEILSN+EV+RLKDRSEGGLYRLFRQCALAVLNTG+ETDDCK LMESHADFDVRLVPQPRGLKLEL+NAP HAFVDGEMLRAIREHLFSVLRDIIYS++IPQ+ +GFRRD+ EDLTN VFHILRNA VL+AGRQPDLVVCWGGHSI H EYQYSK++GHQLGLR LSI TGCGPGAMKGPMKGATIGHAKQRVKNGRYIG+TEPGIIGAEAPNPIVNELVIMPDIEKRLEAF+RCGHGVIVFPGG
Sbjct:    1 MQEPTTNALVSPEGSLEILSNYEVSRLKDRSEGGLYRLFRQCALAVLNTGVETDDCKTLMESHADFDVRLVPQPRGLKLELVNAPAHAFVDGEMLRAIREHLFSVLRDIIYSNTIPQSLSGFRRDNSEDLTNLVFHILRNAGVLEAGRQPDLVVCWGGHSISHAEYQYSKEIGHQLGLRGLSIITGCGPGAMKGPMKGATIGHAKQRVKNGRYIGMTEPGIIGAEAPNPIVNELVIMPDIEKRLEAFIRCGHGVIVFPGG 260
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BLAST of mRNA_C-australica_Contig_10068.1.1 vs. uniprot
Match: A0A7Y8SLR9_9ALTE (AMP nucleosidase n=4 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A7Y8SLR9_9ALTE)

HSP 1 Score: 487 bits (1253), Expect = 2.650e-170
Identity = 233/260 (89.62%), Postives = 248/260 (95.38%), Query Frame = 1 
Query:    1 MQETTINALVSPEGSLEILSNHEVNRLKDRSEGGLYRLFRQCALAVLNTGIETDDCKALMESHADFDVRLVPQPRGLKLELINAPGHAFVDGEMLRAIREHLFSVLRDIIYSHSIPQTAAGFRRDDPEDLTNYVFHILRNARVLQAGRQPDLVVCWGGHSIGHEEYQYSKDVGHQLGLRALSICTGCGPGAMKGPMKGATIGHAKQRVKNGRYIGITEPGIIGAEAPNPIVNELVIMPDIEKRLEAFVRCGHGVIVFPGG 780
            M E  INALVSPEGSLEILS HEVNRLKDRSEGGLYRLFRQCALAVLNTG+E+DDCK+LME+HADFDVRLVPQPRGLKLELINAPGHAFVDGE+LRA+REHLFSVLRDI+Y+HSIPQT AGFR D+PED+TN VFHILRNARVL+ GRQPD+VVCWGGHSIG EEYQYSK+VGHQLGLR LSI TGCGPGAMKGPMKGATIGHAKQRV+NGRY+GITEP IIGAEAPNPIVNELVIMPDIEKRLEAFVRCGHGVIVFPGG
Sbjct:    1 MTEPKINALVSPEGSLEILSAHEVNRLKDRSEGGLYRLFRQCALAVLNTGVESDDCKSLMEAHADFDVRLVPQPRGLKLELINAPGHAFVDGELLRAMREHLFSVLRDIVYTHSIPQTIAGFRGDNPEDITNLVFHILRNARVLEPGRQPDMVVCWGGHSIGQEEYQYSKEVGHQLGLRNLSIITGCGPGAMKGPMKGATIGHAKQRVRNGRYVGITEPAIIGAEAPNPIVNELVIMPDIEKRLEAFVRCGHGVIVFPGG 260
[Close]
BLAST of mRNA_C-australica_Contig_10068.1.1 vs. uniprot
Match: UPI00140DAC28 (nucleotide 5'-monophosphate nucleosidase PpnN n=2 Tax=Marinobacter TaxID=2742 RepID=UPI00140DAC28)

HSP 1 Score: 486 bits (1252), Expect = 3.900e-170
Identity = 234/260 (90.00%), Postives = 244/260 (93.85%), Query Frame = 1 
Query:    1 MQETTINALVSPEGSLEILSNHEVNRLKDRSEGGLYRLFRQCALAVLNTGIETDDCKALMESHADFDVRLVPQPRGLKLELINAPGHAFVDGEMLRAIREHLFSVLRDIIYSHSIPQTAAGFRRDDPEDLTNYVFHILRNARVLQAGRQPDLVVCWGGHSIGHEEYQYSKDVGHQLGLRALSICTGCGPGAMKGPMKGATIGHAKQRVKNGRYIGITEPGIIGAEAPNPIVNELVIMPDIEKRLEAFVRCGHGVIVFPGG 780
            M + TINALVSPEGSLEILSNHEVNRLKDRSEGGLY+LFRQCALAVLNTG+ETDDCK LME H DFDVRLVPQPRGLKLELINAP  AFVDGEMLRAIREHLFSVLRDIIYSHSIP +AAGF R DPED+TN +FHILRNARVLQAGRQPD+VVCWGGHSI  EEY YSKDVGH+LGLR LSICTGCGPGAMKGPMKGATIGHAKQRVKNGRYIG+TEPGIIGAEAPNPIVNELVIMPDIEKRLEAFVR GHG+IVFPGG
Sbjct:    1 MNQATINALVSPEGSLEILSNHEVNRLKDRSEGGLYKLFRQCALAVLNTGVETDDCKDLMEVHMDFDVRLVPQPRGLKLELINAPASAFVDGEMLRAIREHLFSVLRDIIYSHSIPTSAAGFNRQDPEDITNLIFHILRNARVLQAGRQPDMVVCWGGHSISREEYVYSKDVGHELGLRGLSICTGCGPGAMKGPMKGATIGHAKQRVKNGRYIGLTEPGIIGAEAPNPIVNELVIMPDIEKRLEAFVRAGHGIIVFPGG 260
[Close]
BLAST of mRNA_C-australica_Contig_10068.1.1 vs. uniprot
Match: UPI001E6371E3 (nucleotide 5'-monophosphate nucleosidase PpnN n=1 Tax=Marinobacter TaxID=2742 RepID=UPI001E6371E3)

HSP 1 Score: 486 bits (1250), Expect = 7.580e-170
Identity = 235/260 (90.38%), Postives = 244/260 (93.85%), Query Frame = 1 
Query:    1 MQETTINALVSPEGSLEILSNHEVNRLKDRSEGGLYRLFRQCALAVLNTGIETDDCKALMESHADFDVRLVPQPRGLKLELINAPGHAFVDGEMLRAIREHLFSVLRDIIYSHSIPQTAAGFRRDDPEDLTNYVFHILRNARVLQAGRQPDLVVCWGGHSIGHEEYQYSKDVGHQLGLRALSICTGCGPGAMKGPMKGATIGHAKQRVKNGRYIGITEPGIIGAEAPNPIVNELVIMPDIEKRLEAFVRCGHGVIVFPGG 780
            M E TINALVSPEGSLEILSNHEVNRLKDRSEGGLYRLFRQCALAVLNTG+E DDCK+LME HADFD+RLVPQPRGLKLELINAP  AFVDG+MLRA REHLFSVLRDI+YSHSIP +AAGFRRDDPED+TN +FHILRNARVLQAGRQPDLVVCWGGHSI  EEY YSKDVGHQLGLR LSI TGCGPGAMKGPMKGATIGHAKQRVK+GRYIGITEP IIGAEAPNPIVNELVIMPDIEKRLEAFVR GHGVIVFPGG
Sbjct:    1 MSEPTINALVSPEGSLEILSNHEVNRLKDRSEGGLYRLFRQCALAVLNTGVEADDCKSLMEQHADFDIRLVPQPRGLKLELINAPASAFVDGDMLRANREHLFSVLRDIVYSHSIPSSAAGFRRDDPEDITNLIFHILRNARVLQAGRQPDLVVCWGGHSINREEYTYSKDVGHQLGLRGLSIVTGCGPGAMKGPMKGATIGHAKQRVKDGRYIGITEPAIIGAEAPNPIVNELVIMPDIEKRLEAFVRAGHGVIVFPGG 260
[Close]
BLAST of mRNA_C-australica_Contig_10068.1.1 vs. uniprot
Match: A0A4P6WDC4_9GAMM (AMP nucleosidase n=30 Tax=Marinobacter TaxID=2742 RepID=A0A4P6WDC4_9GAMM)

HSP 1 Score: 483 bits (1244), Expect = 6.190e-169
Identity = 230/260 (88.46%), Postives = 245/260 (94.23%), Query Frame = 1 
Query:    1 MQETTINALVSPEGSLEILSNHEVNRLKDRSEGGLYRLFRQCALAVLNTGIETDDCKALMESHADFDVRLVPQPRGLKLELINAPGHAFVDGEMLRAIREHLFSVLRDIIYSHSIPQTAAGFRRDDPEDLTNYVFHILRNARVLQAGRQPDLVVCWGGHSIGHEEYQYSKDVGHQLGLRALSICTGCGPGAMKGPMKGATIGHAKQRVKNGRYIGITEPGIIGAEAPNPIVNELVIMPDIEKRLEAFVRCGHGVIVFPGG 780
            M E+T+NALVSPEGSLEILS+HEV RLKD+SEGGLYRLFRQCALAVLNTG+ETDDCK LME+HADFDV LVPQPRGLKLEL+NAP HAFVDGEMLRA REHLFSVLRDI+YSHS+P    GFR+D+PEDLTN VFHILRNARVL+AGRQPD+VVCWGGHSI H EYQYSK+VGHQLGLR LSICTGCGPGAMKGPMKGATIGHAKQR+KNGRYIGITEPGIIGAEAPNPIVNELVIMPDIEKRLEAFVR GHGVIVFPGG
Sbjct:    1 MTESTMNALVSPEGSLEILSSHEVARLKDKSEGGLYRLFRQCALAVLNTGVETDDCKELMETHADFDVHLVPQPRGLKLELVNAPAHAFVDGEMLRANREHLFSVLRDIVYSHSLPNFVEGFRKDNPEDLTNLVFHILRNARVLEAGRQPDIVVCWGGHSISHNEYQYSKEVGHQLGLRGLSICTGCGPGAMKGPMKGATIGHAKQRIKNGRYIGITEPGIIGAEAPNPIVNELVIMPDIEKRLEAFVRAGHGVIVFPGG 260
[Close]
BLAST of mRNA_C-australica_Contig_10068.1.1 vs. uniprot
Match: UPI00124454C9 (nucleotide 5'-monophosphate nucleosidase PpnN n=1 Tax=Marinobacter halotolerans TaxID=1569211 RepID=UPI00124454C9)

HSP 1 Score: 480 bits (1235), Expect = 1.440e-167
Identity = 230/260 (88.46%), Postives = 248/260 (95.38%), Query Frame = 1 
Query:    1 MQETTINALVSPEGSLEILSNHEVNRLKDRSEGGLYRLFRQCALAVLNTGIETDDCKALMESHADFDVRLVPQPRGLKLELINAPGHAFVDGEMLRAIREHLFSVLRDIIYSHSIPQTAAGFRRDDPEDLTNYVFHILRNARVLQAGRQPDLVVCWGGHSIGHEEYQYSKDVGHQLGLRALSICTGCGPGAMKGPMKGATIGHAKQRVKNGRYIGITEPGIIGAEAPNPIVNELVIMPDIEKRLEAFVRCGHGVIVFPGG 780
            M  +TINALVSPEGSLEILS  EVNRLKD+SEGGLY+LFRQCALAVLNTG+ETDDCK+LME+HADFDVRLVPQPRGLKLELINAP HAFVDGEMLRA+REHLFSVLRDIIYS+SIPQ+AAGF+RD+PE +TN VFHILRNARVLQAGR+PDLVVCWGGHSI   EYQYSK+VGHQLGLR LSICTGCGPGAMKGPMKGATIGHAKQRVK+GRYIG+TEPGIIGAEAPNPIVNELVI+PDIEKRLEAF+R GHGVIVFPGG
Sbjct:    1 MSASTINALVSPEGSLEILSTFEVNRLKDKSEGGLYQLFRQCALAVLNTGVETDDCKSLMEAHADFDVRLVPQPRGLKLELINAPAHAFVDGEMLRAMREHLFSVLRDIIYSYSIPQSAAGFKRDEPEGITNLVFHILRNARVLQAGRRPDLVVCWGGHSINEREYQYSKEVGHQLGLRGLSICTGCGPGAMKGPMKGATIGHAKQRVKDGRYIGLTEPGIIGAEAPNPIVNELVILPDIEKRLEAFLRAGHGVIVFPGG 260
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10068.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E5SP25_9GAMM4.030e-17996.15AMP nucleosidase n=1 Tax=Marinobacter sp. TaxID=50... [more]
A0A142FSE9_9GAMM5.730e-17993.85AMP nucleosidase n=62 Tax=Marinobacteraceae TaxID=... [more]
R8B308_9GAMM5.140e-17591.54AMP nucleosidase n=22 Tax=Marinobacteraceae TaxID=... [more]
UPI001CC0C1102.420e-17391.15nucleotide 5'-monophosphate nucleosidase PpnN n=1 ... [more]
A0A5B0V9R4_9GAMM2.650e-17090.00AMP nucleosidase n=1 Tax=Marinobacter salinexigens... [more]
A0A7Y8SLR9_9ALTE2.650e-17089.62AMP nucleosidase n=4 Tax=Gammaproteobacteria TaxID... [more]
UPI00140DAC283.900e-17090.00nucleotide 5'-monophosphate nucleosidase PpnN n=2 ... [more]
UPI001E6371E37.580e-17090.38nucleotide 5'-monophosphate nucleosidase PpnN n=1 ... [more]
A0A4P6WDC4_9GAMM6.190e-16988.46AMP nucleosidase n=30 Tax=Marinobacter TaxID=2742 ... [more]
UPI00124454C91.440e-16788.46nucleotide 5'-monophosphate nucleosidase PpnN n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10068contigC-australica_Contig_10068:62..841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog225937.HP15_3408
Preferred nameygdH
PFAMsDUF3412,DUF4478,Lysine_decarbox
Model size780
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00063,RC00318
KEGG koko:K06966
KEGG ReactionR00182,R00510
KEGG Pathwayko00230,ko00240,map00230,map00240
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016787,GO:0016798,GO:0016799,GO:0044424,GO:0044444,GO:0044464,GO:0047405
Exons1
Evalue1.22e-189
EggNOG OGsCOG1611@1|root,COG1611@2|Bacteria,1MVQJ@1224|Proteobacteria,1RQHX@1236|Gammaproteobacteria,46503@72275|Alteromonadaceae
EC3.2.2.10
DescriptionRossmann fold nucleotide-binding protein
Cds size780
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586740.7330253-CDS-C-australica_Contig_10068:61..8411682586740.7330253-CDS-C-australica_Contig_10068:61..841Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10068 62..841 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10068.1.1prot_C-australica_Contig_10068.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10068 62..841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10068.1.1

>prot_C-australica_Contig_10068.1.1 ID=prot_C-australica_Contig_10068.1.1|Name=mRNA_C-australica_Contig_10068.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=260bp
MQETTINALVSPEGSLEILSNHEVNRLKDRSEGGLYRLFRQCALAVLNTG
IETDDCKALMESHADFDVRLVPQPRGLKLELINAPGHAFVDGEMLRAIRE
HLFSVLRDIIYSHSIPQTAAGFRRDDPEDLTNYVFHILRNARVLQAGRQP
DLVVCWGGHSIGHEEYQYSKDVGHQLGLRALSICTGCGPGAMKGPMKGAT
IGHAKQRVKNGRYIGITEPGIIGAEAPNPIVNELVIMPDIEKRLEAFVRC
GHGVIVFPGG
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mRNA from alignment at C-australica_Contig_10068:62..841+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10068.1.1 ID=mRNA_C-australica_Contig_10068.1.1|Name=mRNA_C-australica_Contig_10068.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=780bp|location=Sequence derived from alignment at C-australica_Contig_10068:62..841+ (Chrysoparadoxa australica CS_1217)
ATGCAGGAAACCACCATCAATGCCCTCGTCTCACCAGAGGGCAGCCTTGA
AATTCTCTCCAATCATGAGGTCAACCGCCTCAAGGACCGCAGCGAAGGCG
GGCTTTACCGGCTGTTTCGCCAATGCGCGCTGGCGGTTCTCAATACGGGC
ATCGAGACTGACGACTGCAAGGCATTGATGGAATCTCATGCCGACTTTGA
TGTCCGCCTGGTACCGCAGCCCCGGGGCCTCAAACTGGAACTGATCAATG
CGCCCGGCCATGCCTTTGTTGATGGCGAAATGCTGAGGGCGATCCGCGAG
CACCTGTTCTCGGTTTTACGAGACATTATCTACTCGCATTCAATCCCTCA
GACAGCCGCCGGTTTTCGCCGGGATGATCCGGAGGACCTGACCAATTACG
TATTCCACATTCTCCGCAACGCCCGGGTGCTGCAGGCGGGAAGACAACCA
GACCTCGTGGTCTGCTGGGGTGGCCACTCCATCGGGCATGAAGAATACCA
GTACAGCAAGGATGTCGGTCATCAGTTGGGGCTCAGGGCCCTGAGCATCT
GCACCGGATGTGGCCCGGGTGCCATGAAAGGTCCCATGAAAGGTGCCACC
ATTGGCCACGCCAAGCAGCGGGTAAAGAACGGTCGCTACATCGGTATTAC
AGAACCCGGCATCATTGGCGCCGAAGCCCCAAACCCGATCGTCAATGAAC
TGGTCATCATGCCGGACATTGAAAAGCGCCTGGAAGCGTTCGTCCGCTGT
GGTCACGGCGTGATTGTATTCCCAGGCGGT
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Coding sequence (CDS) from alignment at C-australica_Contig_10068:62..841+

>mRNA_C-australica_Contig_10068.1.1 ID=mRNA_C-australica_Contig_10068.1.1|Name=mRNA_C-australica_Contig_10068.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=780bp|location=Sequence derived from alignment at C-australica_Contig_10068:62..841+ (Chrysoparadoxa australica CS_1217)
ATGCAGGAAACCACCATCAATGCCCTCGTCTCACCAGAGGGCAGCCTTGA
AATTCTCTCCAATCATGAGGTCAACCGCCTCAAGGACCGCAGCGAAGGCG
GGCTTTACCGGCTGTTTCGCCAATGCGCGCTGGCGGTTCTCAATACGGGC
ATCGAGACTGACGACTGCAAGGCATTGATGGAATCTCATGCCGACTTTGA
TGTCCGCCTGGTACCGCAGCCCCGGGGCCTCAAACTGGAACTGATCAATG
CGCCCGGCCATGCCTTTGTTGATGGCGAAATGCTGAGGGCGATCCGCGAG
CACCTGTTCTCGGTTTTACGAGACATTATCTACTCGCATTCAATCCCTCA
GACAGCCGCCGGTTTTCGCCGGGATGATCCGGAGGACCTGACCAATTACG
TATTCCACATTCTCCGCAACGCCCGGGTGCTGCAGGCGGGAAGACAACCA
GACCTCGTGGTCTGCTGGGGTGGCCACTCCATCGGGCATGAAGAATACCA
GTACAGCAAGGATGTCGGTCATCAGTTGGGGCTCAGGGCCCTGAGCATCT
GCACCGGATGTGGCCCGGGTGCCATGAAAGGTCCCATGAAAGGTGCCACC
ATTGGCCACGCCAAGCAGCGGGTAAAGAACGGTCGCTACATCGGTATTAC
AGAACCCGGCATCATTGGCGCCGAAGCCCCAAACCCGATCGTCAATGAAC
TGGTCATCATGCCGGACATTGAAAAGCGCCTGGAAGCGTTCGTCCGCTGT
GGTCACGGCGTGATTGTATTCCCAGGCGGT
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