mRNA_C-australica_Contig_10067.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10067.1.1
Unique NamemRNA_C-australica_Contig_10067.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10067.1.1 vs. uniprot
Match: A0A2E3NQR2_9GAMM (Fis family transcriptional regulator n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A2E3NQR2_9GAMM)

HSP 1 Score: 332 bits (851), Expect = 2.160e-109
Identity = 172/270 (63.70%), Postives = 214/270 (79.26%), Query Frame = 1
Query:    1 RPFVAVNCAAIPSELLESELFGHEKGAFSGAISRREGRFEMAEGGTLFLDEIGDMSLPMQVKVLRVLQERSYERVGGNEPRSCDVRLIAATHRDLEAMIKQGSFREDLYYRLDVFPIELPPLRDRLADLSILINEINRCHRANGRASVTLTPAALAALGTGAWPGNIRELSNLLERLAVLYPDEHVDEDRLPPRYQRRT---------------EPGTPPKAPATLPPEGIDLKAHMASVEVSLIQAALDKTNGVIAHAADLLHLRRTTL 765
            +PFVAVNC AIP++LLESELFGHEKGAF+GA+++R GRFE+AEGGTLFLDEIGDMSLPMQVK+LRVLQERS+ERVGGN+ + CDVR+IAATHRDLE+ I  G FREDL+YRL+VFP+E+P L DR+ADL  L++++    +A+GR  V L+  A+AAL   AWPGN+REL+NL+ERL+VL+P + V+ D LP RYQ                  EPG P +AP+ LP  GIDL+ HMASVE++LI+ ALD +NGV+AHAA LLHLRRTTL
Sbjct:  182 KPFVAVNCGAIPADLLESELFGHEKGAFTGAVAQRRGRFELAEGGTLFLDEIGDMSLPMQVKILRVLQERSFERVGGNDTKQCDVRIIAATHRDLESRIVSGDFREDLFYRLNVFPVEMPRLTDRIADLPRLVDDLIASLQADGRGDVALSEQAVAALQQYAWPGNVRELANLVERLSVLHPGQCVEVDELPERYQPAAMATASQAGVLADLTAEPG-PARAPS-LPESGIDLRDHMASVEMALIRQALDASNGVVAHAATLLHLRRTTL 449          
BLAST of mRNA_C-australica_Contig_10067.1.1 vs. uniprot
Match: A0A1E2UTJ7_9GAMM (Sigma-54-dependent Fis family transcriptional regulator n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1E2UTJ7_9GAMM)

HSP 1 Score: 325 bits (832), Expect = 3.950e-106
Identity = 169/271 (62.36%), Postives = 207/271 (76.38%), Query Frame = 1
Query:    1 RPFVAVNCAAIPSELLESELFGHEKGAFSGAISRREGRFEMAEGGTLFLDEIGDMSLPMQVKVLRVLQERSYERVGGNEPRSCDVRLIAATHRDLEAMIKQGSFREDLYYRLDVFPIELPPLRDRLADLSILINEINRCHRANGRASVTLTPAALAALGTGAWPGNIRELSNLLERLAVLYPDEHVDEDRLPPRYQRRTE----------------PGTPPKAPATLPPEGIDLKAHMASVEVSLIQAALDKTNGVIAHAADLLHLRRTTL 765
            +PFV VNC AIP +LLESELFGHEKGAF+GAIS R+GRFEMAEGGTLFLDEIGDMS+PMQVK+LRVLQERS+ERVG N+   C+VR+IAATHR+LE+ IK G FREDL+YRL+VFPIE+PPLRDR+ D+ +L+N++        R SV LTPAA+AAL    WPGN+REL+NL+ERLA+LYP   VD   LP +++   E                PGT   AP  LP +GIDLKAH+ S+E SLIQ ALD+++G++AHAA  LH+RRTTL
Sbjct:  203 KPFVPVNCGAIPGDLLESELFGHEKGAFTGAISARQGRFEMAEGGTLFLDEIGDMSMPMQVKLLRVLQERSFERVGSNKTIPCNVRIIAATHRNLESAIKNGDFREDLFYRLNVFPIEMPPLRDRVEDIPVLVNDLIHRIENEKRGSVRLTPAAIAALSHYRWPGNVRELANLIERLAILYPYGVVDIGELPEKFKPAAELIDTTKLPQVSLEGDEPGTTQNAPR-LPNDGIDLKAHLNSLEQSLIQQALDESDGIVAHAAKRLHMRRTTL 472          
BLAST of mRNA_C-australica_Contig_10067.1.1 vs. uniprot
Match: A0A383XPI8_9GAMM (Sigma-54-dependent Fis family transcriptional regulator n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A383XPI8_9GAMM)

HSP 1 Score: 322 bits (825), Expect = 1.940e-105
Identity = 167/270 (61.85%), Postives = 209/270 (77.41%), Query Frame = 1
Query:    1 RPFVAVNCAAIPSELLESELFGHEKGAFSGAISRREGRFEMAEGGTLFLDEIGDMSLPMQVKVLRVLQERSYERVGGNEPRSCDVRLIAATHRDLEAMIKQGSFREDLYYRLDVFPIELPPLRDRLADLSILINEINRCHRANGRASVTLTPAALAALGTGAWPGNIRELSNLLERLAVLYPDEHVDEDRLPPRYQRRT--EPGTPPK-------------APATLPPEGIDLKAHMASVEVSLIQAALDKTNGVIAHAADLLHLRRTTL 765
            +PFVAVNC AIP++LLESELFGHEKGAF+GA+++R GRFE+AEGGTLFLDEIGDMSLPMQVK+LRVLQERS+ERVGGNE + CDVR+IAATHRDLE+ I  G FREDL+YRL+VFP+E+P L DR+ DL  L++++    +A+GR  V L   A++AL   AWPGN+REL+NL+ERL+VL+P + V  D LP RYQ  +  +  TP +                +LP  GIDL+ HMASVE++LI+ ALD +NGV+AHAA LLHLRRTTL
Sbjct:  182 KPFVAVNCGAIPADLLESELFGHEKGAFTGAVAQRRGRFELAEGGTLFLDEIGDMSLPMQVKILRVLQERSFERVGGNETKQCDVRIIAATHRDLESRIVSGDFREDLFYRLNVFPVEMPRLTDRIDDLPRLVDDLIASLQADGRGDVALDARAVSALQQYAWPGNVRELANLVERLSVLHPGQTVGVDDLPARYQPESAGDEVTPAELLGVNGSSAGVAATQPSLPDAGIDLRDHMASVEMALIRQALDASNGVVAHAAQLLHLRRTTL 451          
BLAST of mRNA_C-australica_Contig_10067.1.1 vs. uniprot
Match: A0A6I7N6J6_9GAMM (Sigma-54-dependent Fis family transcriptional regulator n=1 Tax=Thioalkalivibrio sp. TaxID=2093813 RepID=A0A6I7N6J6_9GAMM)

HSP 1 Score: 318 bits (814), Expect = 1.990e-103
Identity = 163/267 (61.05%), Postives = 200/267 (74.91%), Query Frame = 1
Query:    1 RPFVAVNCAAIPSELLESELFGHEKGAFSGAISRREGRFEMAEGGTLFLDEIGDMSLPMQVKVLRVLQERSYERVGGNEPRSCDVRLIAATHRDLEAMIKQGSFREDLYYRLDVFPIELPPLRDRLADLSILINEINRCHRANGRASVTLTPAALAALGTGAWPGNIRELSNLLERLAVLYPDEHVDEDRLPPRYQRRTEPGTP------------PKAPATLPPEGIDLKAHMASVEVSLIQAALDKTNGVIAHAADLLHLRRTTL 765
            RPFVAVNC AIP++LLESELFGHEKGAF+GA++ R+GRFEMAEGGTLFLDEIGDM LPMQVK+LRVLQER+ ERVG N   +CDVR++AATHRDLE  I+ G FREDL+YRL+VFPIE+PPLR RL DL +LI E+       GR +V L P+AL  L    WPGN+REL+NL+ERLA+L+P E V  + LPP++ R+ +PG P            P     LP +GIDLK ++  +EV LI+ ALD  +GV+AHAA LL +RRTTL
Sbjct:  206 RPFVAVNCGAIPADLLESELFGHEKGAFTGALTARQGRFEMAEGGTLFLDEIGDMPLPMQVKLLRVLQERTIERVGSNRSIACDVRIVAATHRDLEVAIEDGDFREDLFYRLNVFPIEMPPLRQRLGDLPLLITELTARMEGEGRRTVRLGPSALRVLSVYPWPGNVRELANLIERLAILHPGETVQAEDLPPKF-RQGQPGAPEDFDTPQIADPGPGTETPLPQDGIDLKEYLNELEVGLIRRALDDASGVVAHAAKLLGMRRTTL 471          
BLAST of mRNA_C-australica_Contig_10067.1.1 vs. uniprot
Match: G2DFT5_9GAMM (DNA-binding regulatory protein for nitrogen fixation n=5 Tax=sulfur-oxidizing symbionts TaxID=32036 RepID=G2DFT5_9GAMM)

HSP 1 Score: 318 bits (814), Expect = 2.050e-103
Identity = 168/271 (61.99%), Postives = 207/271 (76.38%), Query Frame = 1
Query:    1 RPFVAVNCAAIPSELLESELFGHEKGAFSGAISRREGRFEMAEGGTLFLDEIGDMSLPMQVKVLRVLQERSYERVGGNEPRSCDVRLIAATHRDLEAMIKQGSFREDLYYRLDVFPIELPPLRDRLADLSILINEINRCHRANGRASVTLTPAALAALGTGAWPGNIRELSNLLERLAVLYPDEHVDEDRLPPRYQ----------------RRTEPGTPPKAPATLPPEGIDLKAHMASVEVSLIQAALDKTNGVIAHAADLLHLRRTTL 765
            +PFV VNC AIP++LLESELFGHEKGAF+GAIS R+GRFEMAEGGTLFLDEIGDMS+PMQVK+LRVLQERS+ERVG N+P   +VR++AATHR+LE  I+  SFREDLYYRL+VFPIE+PPLR R+ D+ +L+ ++ R      R SV LTPAA+AAL    WPGN+REL+NL+ERLA+LYP   VD   LP +++                R +EP T   AP  LP EGIDLKAH++++E SLIQ ALD++ GV+AHAA  LH+RRTTL
Sbjct:  203 KPFVPVNCGAIPADLLESELFGHEKGAFTGAISSRQGRFEMAEGGTLFLDEIGDMSMPMQVKLLRVLQERSFERVGSNKPIKSNVRILAATHRNLEKAIEDNSFREDLYYRLNVFPIEMPPLRARVEDIPVLVTDLIRRIENEKRGSVRLTPAAVAALSHYRWPGNVRELANLIERLAILYPYGVVDVADLPDKFRPVGNLVDTVQLPEVAIRGSEPDTVVHAPR-LPNEGIDLKAHLSTLEQSLIQQALDESEGVVAHAAKRLHMRRTTL 472          
BLAST of mRNA_C-australica_Contig_10067.1.1 vs. uniprot
Match: A0A2U0A650_9GAMM (Sigma-54-dependent Fis family transcriptional regulator n=2 Tax=gamma proteobacterium symbiont of Ctena orbiculata TaxID=1968598 RepID=A0A2U0A650_9GAMM)

HSP 1 Score: 317 bits (813), Expect = 2.980e-103
Identity = 164/271 (60.52%), Postives = 207/271 (76.38%), Query Frame = 1
Query:    1 RPFVAVNCAAIPSELLESELFGHEKGAFSGAISRREGRFEMAEGGTLFLDEIGDMSLPMQVKVLRVLQERSYERVGGNEPRSCDVRLIAATHRDLEAMIKQGSFREDLYYRLDVFPIELPPLRDRLADLSILINEINRCHRANGRASVTLTPAALAALGTGAWPGNIRELSNLLERLAVLYPDEHVDEDRLPPRYQ----------------RRTEPGTPPKAPATLPPEGIDLKAHMASVEVSLIQAALDKTNGVIAHAADLLHLRRTTL 765
            +PFV VNC AIP++LLESELFGHEKGAF+GAIS R+GRFEMAE GTLFLDEIGDMS+PMQVK+LRVLQER++ERVG ++  +C+VR+IAATHR+LE  IK G FREDL+YRL+VFPIE+PPLRDR+ D+ +L+N++        R SV LTPAA+AAL    WPGN+REL+NL+ERLA+L+P   VD   LP +++                   EPGT   AP  LP +G+DLKAH+ S+E SLIQ ALD+++G++AHAA  LH+RRTTL
Sbjct:  204 KPFVPVNCGAIPADLLESELFGHEKGAFTGAISARQGRFEMAENGTLFLDEIGDMSMPMQVKLLRVLQERTFERVGSSKTMACNVRIIAATHRNLEEAIKNGDFREDLFYRLNVFPIEMPPLRDRVEDIPVLVNDLIHRIENEKRGSVRLTPAAIAALSHYRWPGNVRELANLIERLAILHPYGVVDVSDLPDKFRPLGDLHEMTQLPQVTIEGEEPGTTVNAPR-LPNDGLDLKAHLNSLEQSLIQQALDESDGIVAHAAKRLHMRRTTL 473          
BLAST of mRNA_C-australica_Contig_10067.1.1 vs. uniprot
Match: A0A2U0A8D0_9GAMM (Sigma-54-dependent Fis family transcriptional regulator n=2 Tax=gamma proteobacterium symbiont of Ctena orbiculata TaxID=1968598 RepID=A0A2U0A8D0_9GAMM)

HSP 1 Score: 317 bits (813), Expect = 4.120e-103
Identity = 166/271 (61.25%), Postives = 205/271 (75.65%), Query Frame = 1
Query:    1 RPFVAVNCAAIPSELLESELFGHEKGAFSGAISRREGRFEMAEGGTLFLDEIGDMSLPMQVKVLRVLQERSYERVGGNEPRSCDVRLIAATHRDLEAMIKQGSFREDLYYRLDVFPIELPPLRDRLADLSILINEINRCHRANGRASVTLTPAALAALGTGAWPGNIRELSNLLERLAVLYPDEHVDEDRLPPRYQ----------------RRTEPGTPPKAPATLPPEGIDLKAHMASVEVSLIQAALDKTNGVIAHAADLLHLRRTTL 765
            +PFV VNC AIP +LLESELFGHEKGAF+GAIS R+GRFEMAEGGTLFLDEIGDMS+PMQVK+LRVLQER++ERVG N    C+VR+IAATHR+LE  IK G FREDL+YRL+VFPIE+PPLRDR+ D+ +L+N++        R SV LTPAA+AAL    WPGN+REL+NL+ERLA+L+P   VD   LP +++                   EPGT   AP  LP +G+DLKAH+ S+E SLIQ ALD+++G++AHAA  LH+RRTTL
Sbjct:  215 KPFVPVNCGAIPGDLLESELFGHEKGAFTGAISARQGRFEMAEGGTLFLDEIGDMSMPMQVKLLRVLQERTFERVGSNRTIPCNVRIIAATHRNLEDAIKHGDFREDLFYRLNVFPIEMPPLRDRVEDIPVLVNDLIHRIENEKRGSVRLTPAAIAALSHYRWPGNVRELANLIERLAILHPYGVVDVADLPEKFRPTGELPEAMQLPQVTLEGEEPGTVINAPR-LPNDGLDLKAHLNSLEQSLIQQALDESDGIVAHAAKRLHMRRTTL 484          
BLAST of mRNA_C-australica_Contig_10067.1.1 vs. uniprot
Match: A0A5A7W2C2_9GAMM (Sigma-54-dependent Fis family transcriptional regulator n=1 Tax=Rhodanobacter sp. T12-5 TaxID=2024611 RepID=A0A5A7W2C2_9GAMM)

HSP 1 Score: 315 bits (806), Expect = 2.050e-102
Identity = 167/278 (60.07%), Postives = 201/278 (72.30%), Query Frame = 1
Query:    1 RPFVAVNCAAIPSELLESELFGHEKGAFSGAISRREGRFEMAEGGTLFLDEIGDMSLPMQVKVLRVLQERSYERVGGNEPRSCDVRLIAATHRDLEAMIKQGSFREDLYYRLDVFPIELPPLRDRLADLSILINEINRCHRANGRASVTLTPAALAALGTGAWPGNIRELSNLLERLAVLYPDEHVDEDRLPPRYQRR---------------------TEPGTPPKAPAT--LPPEGIDLKAHMASVEVSLIQAALDKTNGVIAHAADLLHLRRTTL 765
            +PFVA+NC AIP+ELLESELFGHEKGAF+GAIS R+GRFEMAEGGTLFLDEIGDMSLPMQVK+LRVLQER++ERVGGN+ + CDVR+IAATHR+LE  I    FREDL+YRL VFP+ELP LR+RL DLS L+NE N+     G   V  +  A+ AL   AWPGN+RELSNL+ER+A+L+P   V    LP +Y+ +                     TE G  P A A   LP EG+DLK H+A +EV LI+ ALD T GV+AHAA LLH++RTTL
Sbjct:  182 KPFVAINCGAIPAELLESELFGHEKGAFTGAISARKGRFEMAEGGTLFLDEIGDMSLPMQVKLLRVLQERAFERVGGNKTQRCDVRIIAATHRNLEQSIANDQFREDLFYRLSVFPLELPSLRERLDDLSTLVNEFNQRLARRGLGVVRFSAGAMQALRAHAWPGNVRELSNLVERMAILFPHGEVRSSDLPEKYRGQHAVDEVHGSALLALMEDQPLPTEAGVQPVADALRMLPVEGLDLKDHLADIEVGLIRQALDATGGVVAHAARLLHMQRTTL 459          
BLAST of mRNA_C-australica_Contig_10067.1.1 vs. uniprot
Match: A0A1V3NMB1_9GAMM (Sigma-54-dependent Fis family transcriptional regulator n=2 Tax=Thioalkalivibrio denitrificans TaxID=108003 RepID=A0A1V3NMB1_9GAMM)

HSP 1 Score: 314 bits (805), Expect = 2.510e-102
Identity = 162/266 (60.90%), Postives = 200/266 (75.19%), Query Frame = 1
Query:    1 RPFVAVNCAAIPSELLESELFGHEKGAFSGAISRREGRFEMAEGGTLFLDEIGDMSLPMQVKVLRVLQERSYERVGGNEPRSCDVRLIAATHRDLEAMIKQGSFREDLYYRLDVFPIELPPLRDRLADLSILINEINRCHRANGRASVTLTPAALAALGTGAWPGNIRELSNLLERLAVLYPDEHVDEDRLPPRYQRRTEPGTP-----------PKAPATLPPEGIDLKAHMASVEVSLIQAALDKTNGVIAHAADLLHLRRTTL 765
            RPFVAVNC AIP++LLESELFGHEKGAF+GA+S R+GRFE+A+GGTLFLDEIGDM LPMQVK+LRVLQER++ERVG N    CDVR+IAATHRDLE  I +G FREDLYYRL+VFPIE+PPLR R  DL +LI+E+       GR SV L  +AL AL T  WPGN+REL+NL+ERLA+++P E V+ D LP +++R  +               P   A LP EGIDLK ++  +E+ LI+ ALD+ +GV+AHAA LL +RRTTL
Sbjct:  186 RPFVAVNCGAIPADLLESELFGHEKGAFTGALSARQGRFELAQGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNRSIQCDVRIIAATHRDLETAIDEGRFREDLYYRLNVFPIEVPPLRHRRGDLPLLISELTNRMEGEGRGSVRLAHSALRALATYDWPGNVRELANLIERLAIMFPGETVEVDGLPAKFRREGDEELAELADQVLGEGVPGLDAQLPREGIDLKEYLNDLEMGLIRRALDEASGVVAHAAKLLGMRRTTL 451          
BLAST of mRNA_C-australica_Contig_10067.1.1 vs. uniprot
Match: A0A1G4A8X6_9GAMM (Fis family transcriptional regulator (Fragment) n=1 Tax=Xanthomonadales bacterium RIFOXYA1_FULL_69_10 TaxID=1802656 RepID=A0A1G4A8X6_9GAMM)

HSP 1 Score: 311 bits (796), Expect = 3.490e-102
Identity = 169/277 (61.01%), Postives = 203/277 (73.29%), Query Frame = 1
Query:    1 RPFVAVNCAAIPSELLESELFGHEKGAFSGAISRREGRFEMAEGGTLFLDEIGDMSLPMQVKVLRVLQERSYERVGGNEPRSCDVRLIAATHRDLEAMIKQGSFREDLYYRLDVFPIELPPLRDRLADLSILINEINRCHRANGRASVTLTPAALAALGTGAWPGNIRELSNLLERLAVLYPDEHVDEDRLPPRYQRRTEPGTP----PKAPA------------------TLPPEGIDLKAHMASVEVSLIQAALDKTNGVIAHAADLLHLRRTTL 765
            +PFVA+NC AIP++LLESELFGHEKGAF+GA+++R+GRFEMAEGGTL LDEIGDM + MQVK+LRVLQER++ERVGG +   CDVR+IAATHR+LE  I +G FREDL+YRL+VFPIE+P LR+R  DL  LI  I R    +GR SV L P A+ AL   AWPGN+RELSNLLERL+VL+P   V  D LP RY R   P TP    P++P                   TLPPEGIDL+ HMA +EV LI+AAL + +GV+AHAA LL LRRTTL
Sbjct:   89 KPFVAINCGAIPADLLESELFGHEKGAFTGALTQRKGRFEMAEGGTLLLDEIGDMPMAMQVKLLRVLQERTFERVGGTQTMQCDVRVIAATHRNLETHIAEGKFREDLFYRLNVFPIEMPALRERADDLPDLIAAIARQLTDSGRGSVKLAPDAVQALRHYAWPGNVRELSNLLERLSVLHPSGQVTADDLPARY-RAGLPDTPVAAMPESPVAAAAAAAAPDPATLSPNTTLPPEGIDLRGHMAEIEVELIRAALQQADGVVAHAAPLLGLRRTTL 364          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10067.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E3NQR2_9GAMM2.160e-10963.70Fis family transcriptional regulator n=1 Tax=Xanth... [more]
A0A1E2UTJ7_9GAMM3.950e-10662.36Sigma-54-dependent Fis family transcriptional regu... [more]
A0A383XPI8_9GAMM1.940e-10561.85Sigma-54-dependent Fis family transcriptional regu... [more]
A0A6I7N6J6_9GAMM1.990e-10361.05Sigma-54-dependent Fis family transcriptional regu... [more]
G2DFT5_9GAMM2.050e-10361.99DNA-binding regulatory protein for nitrogen fixati... [more]
A0A2U0A650_9GAMM2.980e-10360.52Sigma-54-dependent Fis family transcriptional regu... [more]
A0A2U0A8D0_9GAMM4.120e-10361.25Sigma-54-dependent Fis family transcriptional regu... [more]
A0A5A7W2C2_9GAMM2.050e-10260.07Sigma-54-dependent Fis family transcriptional regu... [more]
A0A1V3NMB1_9GAMM2.510e-10260.90Sigma-54-dependent Fis family transcriptional regu... [more]
A0A1G4A8X6_9GAMM3.490e-10261.01Fis family transcriptional regulator (Fragment) n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10067contigC-australica_Contig_10067:70..840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1049564.TevJSym_ac00800
Preferred namefleQ
PFAMsFleQ,HTH_8,Sigma54_activat
Model size771
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K10941
KEGG Pathwayko02020,ko02025,ko05111,map02020,map02025,map05111
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.36e-104
EggNOG OGsCOG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,1T1IW@1236|Gammaproteobacteria,1J5J8@118884|unclassified Gammaproteobacteria
DescriptionCOG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Cds size771
COG categoryT
BRITEko00000,ko00001,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586740.6970353-CDS-C-australica_Contig_10067:69..8401682586740.6970353-CDS-C-australica_Contig_10067:69..840Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10067 70..840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10067.1.1prot_C-australica_Contig_10067.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10067 70..840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10067.1.1

>prot_C-australica_Contig_10067.1.1 ID=prot_C-australica_Contig_10067.1.1|Name=mRNA_C-australica_Contig_10067.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=257bp
RPFVAVNCAAIPSELLESELFGHEKGAFSGAISRREGRFEMAEGGTLFLD
EIGDMSLPMQVKVLRVLQERSYERVGGNEPRSCDVRLIAATHRDLEAMIK
QGSFREDLYYRLDVFPIELPPLRDRLADLSILINEINRCHRANGRASVTL
TPAALAALGTGAWPGNIRELSNLLERLAVLYPDEHVDEDRLPPRYQRRTE
PGTPPKAPATLPPEGIDLKAHMASVEVSLIQAALDKTNGVIAHAADLLHL
RRTTLA*
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mRNA from alignment at C-australica_Contig_10067:70..840-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10067.1.1 ID=mRNA_C-australica_Contig_10067.1.1|Name=mRNA_C-australica_Contig_10067.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=771bp|location=Sequence derived from alignment at C-australica_Contig_10067:70..840- (Chrysoparadoxa australica CS_1217)
CGTCCGTTCGTGGCCGTCAACTGTGCGGCGATTCCGTCCGAGTTGCTGGA ATCGGAACTGTTCGGCCACGAAAAAGGGGCCTTCTCGGGTGCCATCAGCC GTCGCGAGGGCCGCTTCGAAATGGCCGAAGGCGGCACCCTGTTTCTCGAC GAGATCGGTGACATGAGCCTGCCCATGCAGGTGAAGGTGTTGCGGGTGCT GCAGGAACGCAGCTACGAGCGTGTGGGTGGCAACGAGCCACGCAGTTGTG ATGTCCGGCTGATTGCCGCCACGCATCGCGATCTGGAGGCCATGATCAAG CAGGGCAGTTTCCGCGAGGACCTTTACTACCGCCTGGACGTATTCCCGAT CGAATTGCCACCGCTGCGCGACCGGCTTGCGGACCTGAGCATCCTGATAA ACGAGATCAACCGTTGCCACCGCGCCAACGGCCGGGCCTCGGTCACCCTG ACACCAGCGGCGCTGGCAGCACTGGGCACGGGGGCATGGCCGGGCAACAT CCGGGAGCTGTCGAACCTGCTGGAACGACTCGCGGTGCTGTATCCCGACG AACACGTCGACGAGGATCGGTTACCGCCACGCTACCAGCGCCGCACCGAG CCGGGTACACCGCCGAAGGCGCCCGCCACCCTGCCGCCGGAGGGCATCGA CCTGAAAGCCCACATGGCCAGCGTGGAGGTATCGCTGATCCAGGCGGCGC TGGACAAGACCAACGGCGTGATCGCCCATGCCGCGGATCTGCTGCACCTG CGGCGCACCACGCTGGCGTAA
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Coding sequence (CDS) from alignment at C-australica_Contig_10067:70..840-

>mRNA_C-australica_Contig_10067.1.1 ID=mRNA_C-australica_Contig_10067.1.1|Name=mRNA_C-australica_Contig_10067.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=771bp|location=Sequence derived from alignment at C-australica_Contig_10067:70..840- (Chrysoparadoxa australica CS_1217)
CGTCCGTTCGTGGCCGTCAACTGTGCGGCGATTCCGTCCGAGTTGCTGGA
ATCGGAACTGTTCGGCCACGAAAAAGGGGCCTTCTCGGGTGCCATCAGCC
GTCGCGAGGGCCGCTTCGAAATGGCCGAAGGCGGCACCCTGTTTCTCGAC
GAGATCGGTGACATGAGCCTGCCCATGCAGGTGAAGGTGTTGCGGGTGCT
GCAGGAACGCAGCTACGAGCGTGTGGGTGGCAACGAGCCACGCAGTTGTG
ATGTCCGGCTGATTGCCGCCACGCATCGCGATCTGGAGGCCATGATCAAG
CAGGGCAGTTTCCGCGAGGACCTTTACTACCGCCTGGACGTATTCCCGAT
CGAATTGCCACCGCTGCGCGACCGGCTTGCGGACCTGAGCATCCTGATAA
ACGAGATCAACCGTTGCCACCGCGCCAACGGCCGGGCCTCGGTCACCCTG
ACACCAGCGGCGCTGGCAGCACTGGGCACGGGGGCATGGCCGGGCAACAT
CCGGGAGCTGTCGAACCTGCTGGAACGACTCGCGGTGCTGTATCCCGACG
AACACGTCGACGAGGATCGGTTACCGCCACGCTACCAGCGCCGCACCGAG
CCGGGTACACCGCCGAAGGCGCCCGCCACCCTGCCGCCGGAGGGCATCGA
CCTGAAAGCCCACATGGCCAGCGTGGAGGTATCGCTGATCCAGGCGGCGC
TGGACAAGACCAACGGCGTGATCGCCCATGCCGCGGATCTGCTGCACCTG
CGGCGCACCACGCTGGCGTAA
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