mRNA_C-australica_Contig_10067.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10067.1.1 vs. uniprot
Match: A0A2E3NQR2_9GAMM (Fis family transcriptional regulator n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A2E3NQR2_9GAMM) HSP 1 Score: 332 bits (851), Expect = 2.160e-109 Identity = 172/270 (63.70%), Postives = 214/270 (79.26%), Query Frame = 1 Query: 1 RPFVAVNCAAIPSELLESELFGHEKGAFSGAISRREGRFEMAEGGTLFLDEIGDMSLPMQVKVLRVLQERSYERVGGNEPRSCDVRLIAATHRDLEAMIKQGSFREDLYYRLDVFPIELPPLRDRLADLSILINEINRCHRANGRASVTLTPAALAALGTGAWPGNIRELSNLLERLAVLYPDEHVDEDRLPPRYQRRT---------------EPGTPPKAPATLPPEGIDLKAHMASVEVSLIQAALDKTNGVIAHAADLLHLRRTTL 765 +PFVAVNC AIP++LLESELFGHEKGAF+GA+++R GRFE+AEGGTLFLDEIGDMSLPMQVK+LRVLQERS+ERVGGN+ + CDVR+IAATHRDLE+ I G FREDL+YRL+VFP+E+P L DR+ADL L++++ +A+GR V L+ A+AAL AWPGN+REL+NL+ERL+VL+P + V+ D LP RYQ EPG P +AP+ LP GIDL+ HMASVE++LI+ ALD +NGV+AHAA LLHLRRTTL Sbjct: 182 KPFVAVNCGAIPADLLESELFGHEKGAFTGAVAQRRGRFELAEGGTLFLDEIGDMSLPMQVKILRVLQERSFERVGGNDTKQCDVRIIAATHRDLESRIVSGDFREDLFYRLNVFPVEMPRLTDRIADLPRLVDDLIASLQADGRGDVALSEQAVAALQQYAWPGNVRELANLVERLSVLHPGQCVEVDELPERYQPAAMATASQAGVLADLTAEPG-PARAPS-LPESGIDLRDHMASVEMALIRQALDASNGVVAHAATLLHLRRTTL 449
BLAST of mRNA_C-australica_Contig_10067.1.1 vs. uniprot
Match: A0A1E2UTJ7_9GAMM (Sigma-54-dependent Fis family transcriptional regulator n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1E2UTJ7_9GAMM) HSP 1 Score: 325 bits (832), Expect = 3.950e-106 Identity = 169/271 (62.36%), Postives = 207/271 (76.38%), Query Frame = 1 Query: 1 RPFVAVNCAAIPSELLESELFGHEKGAFSGAISRREGRFEMAEGGTLFLDEIGDMSLPMQVKVLRVLQERSYERVGGNEPRSCDVRLIAATHRDLEAMIKQGSFREDLYYRLDVFPIELPPLRDRLADLSILINEINRCHRANGRASVTLTPAALAALGTGAWPGNIRELSNLLERLAVLYPDEHVDEDRLPPRYQRRTE----------------PGTPPKAPATLPPEGIDLKAHMASVEVSLIQAALDKTNGVIAHAADLLHLRRTTL 765 +PFV VNC AIP +LLESELFGHEKGAF+GAIS R+GRFEMAEGGTLFLDEIGDMS+PMQVK+LRVLQERS+ERVG N+ C+VR+IAATHR+LE+ IK G FREDL+YRL+VFPIE+PPLRDR+ D+ +L+N++ R SV LTPAA+AAL WPGN+REL+NL+ERLA+LYP VD LP +++ E PGT AP LP +GIDLKAH+ S+E SLIQ ALD+++G++AHAA LH+RRTTL Sbjct: 203 KPFVPVNCGAIPGDLLESELFGHEKGAFTGAISARQGRFEMAEGGTLFLDEIGDMSMPMQVKLLRVLQERSFERVGSNKTIPCNVRIIAATHRNLESAIKNGDFREDLFYRLNVFPIEMPPLRDRVEDIPVLVNDLIHRIENEKRGSVRLTPAAIAALSHYRWPGNVRELANLIERLAILYPYGVVDIGELPEKFKPAAELIDTTKLPQVSLEGDEPGTTQNAPR-LPNDGIDLKAHLNSLEQSLIQQALDESDGIVAHAAKRLHMRRTTL 472
BLAST of mRNA_C-australica_Contig_10067.1.1 vs. uniprot
Match: A0A383XPI8_9GAMM (Sigma-54-dependent Fis family transcriptional regulator n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A383XPI8_9GAMM) HSP 1 Score: 322 bits (825), Expect = 1.940e-105 Identity = 167/270 (61.85%), Postives = 209/270 (77.41%), Query Frame = 1 Query: 1 RPFVAVNCAAIPSELLESELFGHEKGAFSGAISRREGRFEMAEGGTLFLDEIGDMSLPMQVKVLRVLQERSYERVGGNEPRSCDVRLIAATHRDLEAMIKQGSFREDLYYRLDVFPIELPPLRDRLADLSILINEINRCHRANGRASVTLTPAALAALGTGAWPGNIRELSNLLERLAVLYPDEHVDEDRLPPRYQRRT--EPGTPPK-------------APATLPPEGIDLKAHMASVEVSLIQAALDKTNGVIAHAADLLHLRRTTL 765 +PFVAVNC AIP++LLESELFGHEKGAF+GA+++R GRFE+AEGGTLFLDEIGDMSLPMQVK+LRVLQERS+ERVGGNE + CDVR+IAATHRDLE+ I G FREDL+YRL+VFP+E+P L DR+ DL L++++ +A+GR V L A++AL AWPGN+REL+NL+ERL+VL+P + V D LP RYQ + + TP + +LP GIDL+ HMASVE++LI+ ALD +NGV+AHAA LLHLRRTTL Sbjct: 182 KPFVAVNCGAIPADLLESELFGHEKGAFTGAVAQRRGRFELAEGGTLFLDEIGDMSLPMQVKILRVLQERSFERVGGNETKQCDVRIIAATHRDLESRIVSGDFREDLFYRLNVFPVEMPRLTDRIDDLPRLVDDLIASLQADGRGDVALDARAVSALQQYAWPGNVRELANLVERLSVLHPGQTVGVDDLPARYQPESAGDEVTPAELLGVNGSSAGVAATQPSLPDAGIDLRDHMASVEMALIRQALDASNGVVAHAAQLLHLRRTTL 451
BLAST of mRNA_C-australica_Contig_10067.1.1 vs. uniprot
Match: A0A6I7N6J6_9GAMM (Sigma-54-dependent Fis family transcriptional regulator n=1 Tax=Thioalkalivibrio sp. TaxID=2093813 RepID=A0A6I7N6J6_9GAMM) HSP 1 Score: 318 bits (814), Expect = 1.990e-103 Identity = 163/267 (61.05%), Postives = 200/267 (74.91%), Query Frame = 1 Query: 1 RPFVAVNCAAIPSELLESELFGHEKGAFSGAISRREGRFEMAEGGTLFLDEIGDMSLPMQVKVLRVLQERSYERVGGNEPRSCDVRLIAATHRDLEAMIKQGSFREDLYYRLDVFPIELPPLRDRLADLSILINEINRCHRANGRASVTLTPAALAALGTGAWPGNIRELSNLLERLAVLYPDEHVDEDRLPPRYQRRTEPGTP------------PKAPATLPPEGIDLKAHMASVEVSLIQAALDKTNGVIAHAADLLHLRRTTL 765 RPFVAVNC AIP++LLESELFGHEKGAF+GA++ R+GRFEMAEGGTLFLDEIGDM LPMQVK+LRVLQER+ ERVG N +CDVR++AATHRDLE I+ G FREDL+YRL+VFPIE+PPLR RL DL +LI E+ GR +V L P+AL L WPGN+REL+NL+ERLA+L+P E V + LPP++ R+ +PG P P LP +GIDLK ++ +EV LI+ ALD +GV+AHAA LL +RRTTL Sbjct: 206 RPFVAVNCGAIPADLLESELFGHEKGAFTGALTARQGRFEMAEGGTLFLDEIGDMPLPMQVKLLRVLQERTIERVGSNRSIACDVRIVAATHRDLEVAIEDGDFREDLFYRLNVFPIEMPPLRQRLGDLPLLITELTARMEGEGRRTVRLGPSALRVLSVYPWPGNVRELANLIERLAILHPGETVQAEDLPPKF-RQGQPGAPEDFDTPQIADPGPGTETPLPQDGIDLKEYLNELEVGLIRRALDDASGVVAHAAKLLGMRRTTL 471
BLAST of mRNA_C-australica_Contig_10067.1.1 vs. uniprot
Match: G2DFT5_9GAMM (DNA-binding regulatory protein for nitrogen fixation n=5 Tax=sulfur-oxidizing symbionts TaxID=32036 RepID=G2DFT5_9GAMM) HSP 1 Score: 318 bits (814), Expect = 2.050e-103 Identity = 168/271 (61.99%), Postives = 207/271 (76.38%), Query Frame = 1 Query: 1 RPFVAVNCAAIPSELLESELFGHEKGAFSGAISRREGRFEMAEGGTLFLDEIGDMSLPMQVKVLRVLQERSYERVGGNEPRSCDVRLIAATHRDLEAMIKQGSFREDLYYRLDVFPIELPPLRDRLADLSILINEINRCHRANGRASVTLTPAALAALGTGAWPGNIRELSNLLERLAVLYPDEHVDEDRLPPRYQ----------------RRTEPGTPPKAPATLPPEGIDLKAHMASVEVSLIQAALDKTNGVIAHAADLLHLRRTTL 765 +PFV VNC AIP++LLESELFGHEKGAF+GAIS R+GRFEMAEGGTLFLDEIGDMS+PMQVK+LRVLQERS+ERVG N+P +VR++AATHR+LE I+ SFREDLYYRL+VFPIE+PPLR R+ D+ +L+ ++ R R SV LTPAA+AAL WPGN+REL+NL+ERLA+LYP VD LP +++ R +EP T AP LP EGIDLKAH++++E SLIQ ALD++ GV+AHAA LH+RRTTL Sbjct: 203 KPFVPVNCGAIPADLLESELFGHEKGAFTGAISSRQGRFEMAEGGTLFLDEIGDMSMPMQVKLLRVLQERSFERVGSNKPIKSNVRILAATHRNLEKAIEDNSFREDLYYRLNVFPIEMPPLRARVEDIPVLVTDLIRRIENEKRGSVRLTPAAVAALSHYRWPGNVRELANLIERLAILYPYGVVDVADLPDKFRPVGNLVDTVQLPEVAIRGSEPDTVVHAPR-LPNEGIDLKAHLSTLEQSLIQQALDESEGVVAHAAKRLHMRRTTL 472
BLAST of mRNA_C-australica_Contig_10067.1.1 vs. uniprot
Match: A0A2U0A650_9GAMM (Sigma-54-dependent Fis family transcriptional regulator n=2 Tax=gamma proteobacterium symbiont of Ctena orbiculata TaxID=1968598 RepID=A0A2U0A650_9GAMM) HSP 1 Score: 317 bits (813), Expect = 2.980e-103 Identity = 164/271 (60.52%), Postives = 207/271 (76.38%), Query Frame = 1 Query: 1 RPFVAVNCAAIPSELLESELFGHEKGAFSGAISRREGRFEMAEGGTLFLDEIGDMSLPMQVKVLRVLQERSYERVGGNEPRSCDVRLIAATHRDLEAMIKQGSFREDLYYRLDVFPIELPPLRDRLADLSILINEINRCHRANGRASVTLTPAALAALGTGAWPGNIRELSNLLERLAVLYPDEHVDEDRLPPRYQ----------------RRTEPGTPPKAPATLPPEGIDLKAHMASVEVSLIQAALDKTNGVIAHAADLLHLRRTTL 765 +PFV VNC AIP++LLESELFGHEKGAF+GAIS R+GRFEMAE GTLFLDEIGDMS+PMQVK+LRVLQER++ERVG ++ +C+VR+IAATHR+LE IK G FREDL+YRL+VFPIE+PPLRDR+ D+ +L+N++ R SV LTPAA+AAL WPGN+REL+NL+ERLA+L+P VD LP +++ EPGT AP LP +G+DLKAH+ S+E SLIQ ALD+++G++AHAA LH+RRTTL Sbjct: 204 KPFVPVNCGAIPADLLESELFGHEKGAFTGAISARQGRFEMAENGTLFLDEIGDMSMPMQVKLLRVLQERTFERVGSSKTMACNVRIIAATHRNLEEAIKNGDFREDLFYRLNVFPIEMPPLRDRVEDIPVLVNDLIHRIENEKRGSVRLTPAAIAALSHYRWPGNVRELANLIERLAILHPYGVVDVSDLPDKFRPLGDLHEMTQLPQVTIEGEEPGTTVNAPR-LPNDGLDLKAHLNSLEQSLIQQALDESDGIVAHAAKRLHMRRTTL 473
BLAST of mRNA_C-australica_Contig_10067.1.1 vs. uniprot
Match: A0A2U0A8D0_9GAMM (Sigma-54-dependent Fis family transcriptional regulator n=2 Tax=gamma proteobacterium symbiont of Ctena orbiculata TaxID=1968598 RepID=A0A2U0A8D0_9GAMM) HSP 1 Score: 317 bits (813), Expect = 4.120e-103 Identity = 166/271 (61.25%), Postives = 205/271 (75.65%), Query Frame = 1 Query: 1 RPFVAVNCAAIPSELLESELFGHEKGAFSGAISRREGRFEMAEGGTLFLDEIGDMSLPMQVKVLRVLQERSYERVGGNEPRSCDVRLIAATHRDLEAMIKQGSFREDLYYRLDVFPIELPPLRDRLADLSILINEINRCHRANGRASVTLTPAALAALGTGAWPGNIRELSNLLERLAVLYPDEHVDEDRLPPRYQ----------------RRTEPGTPPKAPATLPPEGIDLKAHMASVEVSLIQAALDKTNGVIAHAADLLHLRRTTL 765 +PFV VNC AIP +LLESELFGHEKGAF+GAIS R+GRFEMAEGGTLFLDEIGDMS+PMQVK+LRVLQER++ERVG N C+VR+IAATHR+LE IK G FREDL+YRL+VFPIE+PPLRDR+ D+ +L+N++ R SV LTPAA+AAL WPGN+REL+NL+ERLA+L+P VD LP +++ EPGT AP LP +G+DLKAH+ S+E SLIQ ALD+++G++AHAA LH+RRTTL Sbjct: 215 KPFVPVNCGAIPGDLLESELFGHEKGAFTGAISARQGRFEMAEGGTLFLDEIGDMSMPMQVKLLRVLQERTFERVGSNRTIPCNVRIIAATHRNLEDAIKHGDFREDLFYRLNVFPIEMPPLRDRVEDIPVLVNDLIHRIENEKRGSVRLTPAAIAALSHYRWPGNVRELANLIERLAILHPYGVVDVADLPEKFRPTGELPEAMQLPQVTLEGEEPGTVINAPR-LPNDGLDLKAHLNSLEQSLIQQALDESDGIVAHAAKRLHMRRTTL 484
BLAST of mRNA_C-australica_Contig_10067.1.1 vs. uniprot
Match: A0A5A7W2C2_9GAMM (Sigma-54-dependent Fis family transcriptional regulator n=1 Tax=Rhodanobacter sp. T12-5 TaxID=2024611 RepID=A0A5A7W2C2_9GAMM) HSP 1 Score: 315 bits (806), Expect = 2.050e-102 Identity = 167/278 (60.07%), Postives = 201/278 (72.30%), Query Frame = 1 Query: 1 RPFVAVNCAAIPSELLESELFGHEKGAFSGAISRREGRFEMAEGGTLFLDEIGDMSLPMQVKVLRVLQERSYERVGGNEPRSCDVRLIAATHRDLEAMIKQGSFREDLYYRLDVFPIELPPLRDRLADLSILINEINRCHRANGRASVTLTPAALAALGTGAWPGNIRELSNLLERLAVLYPDEHVDEDRLPPRYQRR---------------------TEPGTPPKAPAT--LPPEGIDLKAHMASVEVSLIQAALDKTNGVIAHAADLLHLRRTTL 765 +PFVA+NC AIP+ELLESELFGHEKGAF+GAIS R+GRFEMAEGGTLFLDEIGDMSLPMQVK+LRVLQER++ERVGGN+ + CDVR+IAATHR+LE I FREDL+YRL VFP+ELP LR+RL DLS L+NE N+ G V + A+ AL AWPGN+RELSNL+ER+A+L+P V LP +Y+ + TE G P A A LP EG+DLK H+A +EV LI+ ALD T GV+AHAA LLH++RTTL Sbjct: 182 KPFVAINCGAIPAELLESELFGHEKGAFTGAISARKGRFEMAEGGTLFLDEIGDMSLPMQVKLLRVLQERAFERVGGNKTQRCDVRIIAATHRNLEQSIANDQFREDLFYRLSVFPLELPSLRERLDDLSTLVNEFNQRLARRGLGVVRFSAGAMQALRAHAWPGNVRELSNLVERMAILFPHGEVRSSDLPEKYRGQHAVDEVHGSALLALMEDQPLPTEAGVQPVADALRMLPVEGLDLKDHLADIEVGLIRQALDATGGVVAHAARLLHMQRTTL 459
BLAST of mRNA_C-australica_Contig_10067.1.1 vs. uniprot
Match: A0A1V3NMB1_9GAMM (Sigma-54-dependent Fis family transcriptional regulator n=2 Tax=Thioalkalivibrio denitrificans TaxID=108003 RepID=A0A1V3NMB1_9GAMM) HSP 1 Score: 314 bits (805), Expect = 2.510e-102 Identity = 162/266 (60.90%), Postives = 200/266 (75.19%), Query Frame = 1 Query: 1 RPFVAVNCAAIPSELLESELFGHEKGAFSGAISRREGRFEMAEGGTLFLDEIGDMSLPMQVKVLRVLQERSYERVGGNEPRSCDVRLIAATHRDLEAMIKQGSFREDLYYRLDVFPIELPPLRDRLADLSILINEINRCHRANGRASVTLTPAALAALGTGAWPGNIRELSNLLERLAVLYPDEHVDEDRLPPRYQRRTEPGTP-----------PKAPATLPPEGIDLKAHMASVEVSLIQAALDKTNGVIAHAADLLHLRRTTL 765 RPFVAVNC AIP++LLESELFGHEKGAF+GA+S R+GRFE+A+GGTLFLDEIGDM LPMQVK+LRVLQER++ERVG N CDVR+IAATHRDLE I +G FREDLYYRL+VFPIE+PPLR R DL +LI+E+ GR SV L +AL AL T WPGN+REL+NL+ERLA+++P E V+ D LP +++R + P A LP EGIDLK ++ +E+ LI+ ALD+ +GV+AHAA LL +RRTTL Sbjct: 186 RPFVAVNCGAIPADLLESELFGHEKGAFTGALSARQGRFELAQGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNRSIQCDVRIIAATHRDLETAIDEGRFREDLYYRLNVFPIEVPPLRHRRGDLPLLISELTNRMEGEGRGSVRLAHSALRALATYDWPGNVRELANLIERLAIMFPGETVEVDGLPAKFRREGDEELAELADQVLGEGVPGLDAQLPREGIDLKEYLNDLEMGLIRRALDEASGVVAHAAKLLGMRRTTL 451
BLAST of mRNA_C-australica_Contig_10067.1.1 vs. uniprot
Match: A0A1G4A8X6_9GAMM (Fis family transcriptional regulator (Fragment) n=1 Tax=Xanthomonadales bacterium RIFOXYA1_FULL_69_10 TaxID=1802656 RepID=A0A1G4A8X6_9GAMM) HSP 1 Score: 311 bits (796), Expect = 3.490e-102 Identity = 169/277 (61.01%), Postives = 203/277 (73.29%), Query Frame = 1 Query: 1 RPFVAVNCAAIPSELLESELFGHEKGAFSGAISRREGRFEMAEGGTLFLDEIGDMSLPMQVKVLRVLQERSYERVGGNEPRSCDVRLIAATHRDLEAMIKQGSFREDLYYRLDVFPIELPPLRDRLADLSILINEINRCHRANGRASVTLTPAALAALGTGAWPGNIRELSNLLERLAVLYPDEHVDEDRLPPRYQRRTEPGTP----PKAPA------------------TLPPEGIDLKAHMASVEVSLIQAALDKTNGVIAHAADLLHLRRTTL 765 +PFVA+NC AIP++LLESELFGHEKGAF+GA+++R+GRFEMAEGGTL LDEIGDM + MQVK+LRVLQER++ERVGG + CDVR+IAATHR+LE I +G FREDL+YRL+VFPIE+P LR+R DL LI I R +GR SV L P A+ AL AWPGN+RELSNLLERL+VL+P V D LP RY R P TP P++P TLPPEGIDL+ HMA +EV LI+AAL + +GV+AHAA LL LRRTTL Sbjct: 89 KPFVAINCGAIPADLLESELFGHEKGAFTGALTQRKGRFEMAEGGTLLLDEIGDMPMAMQVKLLRVLQERTFERVGGTQTMQCDVRVIAATHRNLETHIAEGKFREDLFYRLNVFPIEMPALRERADDLPDLIAAIARQLTDSGRGSVKLAPDAVQALRHYAWPGNVRELSNLLERLSVLHPSGQVTADDLPARY-RAGLPDTPVAAMPESPVAAAAAAAAPDPATLSPNTTLPPEGIDLRGHMAEIEVELIRAALQQADGVVAHAAPLLGLRRTTL 364 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10067.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10067.1.1 >prot_C-australica_Contig_10067.1.1 ID=prot_C-australica_Contig_10067.1.1|Name=mRNA_C-australica_Contig_10067.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=257bp RPFVAVNCAAIPSELLESELFGHEKGAFSGAISRREGRFEMAEGGTLFLDback to top mRNA from alignment at C-australica_Contig_10067:70..840- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10067.1.1 ID=mRNA_C-australica_Contig_10067.1.1|Name=mRNA_C-australica_Contig_10067.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=771bp|location=Sequence derived from alignment at C-australica_Contig_10067:70..840- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10067:70..840- >mRNA_C-australica_Contig_10067.1.1 ID=mRNA_C-australica_Contig_10067.1.1|Name=mRNA_C-australica_Contig_10067.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=771bp|location=Sequence derived from alignment at C-australica_Contig_10067:70..840- (Chrysoparadoxa australica CS_1217)back to top |