mRNA_C-australica_Contig_1006.4.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1006.4.1
Unique NamemRNA_C-australica_Contig_1006.4.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1006.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1006contigC-australica_Contig_1006:5712..5989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size213
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size108
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586739.712137-UTR-C-australica_Contig_1006:5711..57191682586739.712137-UTR-C-australica_Contig_1006:5711..5719Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1006 5712..5719 -
1682586739.7412837-UTR-C-australica_Contig_1006:5892..59891682586739.7412837-UTR-C-australica_Contig_1006:5892..5989Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1006 5893..5989 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586739.723179-CDS-C-australica_Contig_1006:5719..57681682586739.723179-CDS-C-australica_Contig_1006:5719..5768Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1006 5720..5768 -
1682586739.732429-CDS-C-australica_Contig_1006:5833..58921682586739.732429-CDS-C-australica_Contig_1006:5833..5892Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1006 5834..5892 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1006.4.1prot_C-australica_Contig_1006.4.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1006 5720..5892 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1006.4.1

>prot_C-australica_Contig_1006.4.1 ID=prot_C-australica_Contig_1006.4.1|Name=mRNA_C-australica_Contig_1006.4.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=36bp
MKGIVPEKERERKRGIEEQRFVKCGGDHVVLASTE*
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mRNA from alignment at C-australica_Contig_1006:5712..5989-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1006.4.1 ID=mRNA_C-australica_Contig_1006.4.1|Name=mRNA_C-australica_Contig_1006.4.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=278bp|location=Sequence derived from alignment at C-australica_Contig_1006:5712..5989- (Chrysoparadoxa australica CS_1217)
TATAGATGCAGGTCATCAGGGTGCCTGAGATGCAGATGTACAAAGAAGTA
TAAAGAGGAAGGAGAGAGAGAAAGCGGCATCAGATGATCTTTGTTCAATG
AAGGGTATTGTGCCAGAGAAGGAGAGAGAGAGAAAGAGAGGAATTGAGGA
GCAAAGGTACACCACTGTCCTCGCTAACATCTTCAAGTTCATGGCTCAGA
TTTCTTTGTATGCGTCACCAGGTTTGTTAAGTGTGGTGGTGATCATGTGG
TATTAGCAAGCACAGAGTAGATAGCTGG
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Coding sequence (CDS) from alignment at C-australica_Contig_1006:5712..5989-

>mRNA_C-australica_Contig_1006.4.1 ID=mRNA_C-australica_Contig_1006.4.1|Name=mRNA_C-australica_Contig_1006.4.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=108bp|location=Sequence derived from alignment at C-australica_Contig_1006:5712..5989- (Chrysoparadoxa australica CS_1217)
ATGAAGGGTATTGTGCCAGAGAAGGAGAGAGAGAGAAAGAGAGGAATTGA
GGAGCAAAGGTTTGTTAAGTGTGGTGGTGATCATGTGGTATTAGCAAGCA
CAGAGTAG
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